NGDC BIT

Tool Configuration

Prediction of translation initiation efficiency and changes by SNP/Indel variation.

Data

Input data text

Upload a file

Parameters

References

https://github.com/zhpn1024/TIVar

Instructions

Prediction of translation initiation efficiency and changes by SNP/Indel variation.

Predict RNA translation initiation TI efficiency for potential start codons, based on the context sequence near the start codon. Given SNP/Indel variation, this tools can predict changes of TI efficiencies between ref and alt alleles.

Contributor(s)

Peng Zhang

zhangp@ibp.ac.cn

Data

Input data text

Upload a file

Parameters

References

https://github.com/zhpn1024/TIVar

Instructions

Prediction of translation initiation efficiency and changes by SNP/Indel variation.

Predict RNA translation initiation TI efficiency for potential start codons, based on the context sequence near the start codon. Given SNP/Indel variation, this tools can predict changes of TI efficiencies between ref and alt alleles.

Contributor(s)

Peng Zhang

zhangp@ibp.ac.cn

Data

Input data text

Upload a file

Parameters

References

https://github.com/zhpn1024/TIVar

Instructions

Prediction of translation initiation efficiency and changes by SNP/Indel variation.

Predict RNA translation initiation TI efficiency for potential start codons, based on the context sequence near the start codon. Given SNP/Indel variation, this tools can predict changes of TI efficiencies between ref and alt alleles.

Contributor(s)

Peng Zhang

zhangp@ibp.ac.cn

Result Preview

Example output and submitted task results are displayed here.

#Runs 118

Open result Download result

SeqID Pos StartSeq EffScore s1 36 GACGTGTTA-ATG-GGGC 0.16086 s1 51 CCCAGACCT-ATG-GATT 0.2331 s1 113 AGAGCCAAG-ATC-TGCC 0.05275 s1 125 TGCCCAGGA-CTG-GAAT 0.05669 s1 130 AGGACTGGA-ATG-CTTT 0.05996 s1 194 GTACAATTC-ATG-TGCT 0.06007 s1 212 TGGGTTTGG-ATG-GCAC 0.13032 s1 259 GGCACCAAC-ATT-AACC 0.08637 s1 266 ACATTAACC-CTG-ACAG 0.09722 s1 295 TTCCAGGAA-CTG-GAAG 0.07995 s1 331 GAGGTCATC-ATG-ATCA 0.32589 s1 386 CTGAGAGCT-ATG-AGGC 0.21162