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Input data text:

Upload a file

Example file

Input data text:

Upload a file

Example file

Input omics

Input data storage format, the suffix of the data file

Number of spot neighbors in constructing spatial adjacency graph

Number of highly variable genes set when preprocessing RNA data

Dimension of feature reduction set during preprocessing of RNA data

Dimension of feature reduction set during preprocessing of ATAC data

output dimension

learning rate

training epochs

dropout rate

weight decay

random seed

Encoder hyperparameters corresponding to omics 1

Encoder hyperparameters corresponding to omics 2

Weighting factors for cosine similarity loss

Resolution of leiden clustering

Size of spatial spot

References

Instructions

SpaMI is a tool used for spatial multi-omics data integration.

Contributor(s)

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