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Visualization
BarBoxComutationDotForestHeatmapHistogramLollipopMafsummaryMaftitvManhattanOncoprintPM-AdiversityPM-comp-corPM-comp-funcPM-comp-taxaPM-DistributionPM-HclusterPM-HeatmapPM-Marker-CorrPM-Marker-RFscorePM-Marker-TestPM-NetworkPM-PcaPM-PcoaPM-plot-taxaPM-rare-curvQ-QSurvivalUpsetVenn
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PM-rare-curv
File Type
PM-rand-curv
PM-rand-curv

Data

Input(OTU.Count)
Example file

Parameters

F
TRUE
FALSE
References
 
Instructions

Generates rarefaction curves to show how alpha diversity changes with the number of sequences.

Rarefaction curves illustrate the relationship between alpha diversity and sequencing depth. This analysis can be enabled within the main PM-pipeline by using the -R T parameter, or it can be executed manually as a separate step using this tool.

Contributor(s)
Yuzhu Chen, Jian Li, Yufeng Zhang, Mingqian Zhang, Zheng Sun, Gongchao Jing, Shi Huang, Xiaoquan Su
suxq@qdu.edu.cn
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