| 2024 | TCOD: an integrated resource for tropical crops.Kang H, Huang T, Duan G, Meng Y, Chen X, He S, Xia Z, Zhou X, Chao J, Tang B, Wang Z, Zhu J, Du Z, Sun Y, Zhang S, Xiao J, Tian W, Wang W, Zhao W. Nucleic acids research, Volume 52, Issue D1, 2024 |
| 2024 | BioKA: a curated and integrated biomarker knowledgebase for animals.Wang Y, Lin Y, Wu S, Sun J, Meng Y, Jin E, Kong D, Duan G, Bei S, Fan Z, Wu G, Hao L, Song S, Tang B, Zhao W. Nucleic acids research, Volume 52, Issue D1, 2024 |
| 2024 | OPIA: an open archive of plant images and related phenotypic traits.Cao Y, Tian D, Tang Z, Liu X, Hu W, Zhang Z, Song S. Nucleic acids research, Volume 52, Issue D1, 2024 |
| 2024 | The P10K database: a data portal for the protist 10 000 genomes project.Gao X, Chen K, Xiong J, Zou D, Yang F, Ma Y, Jiang C, Gao X, Wang G, Gu S, Zhang P, Luo S, Huang K, Bao Y, Zhang Z, Ma L, Miao W. Nucleic acids research, Volume 52, Issue D1, 2024 |
| 2024 | PPGR: a comprehensive perennial plant genomes and regulation database.Yang S, Zong W, Shi L, Li R, Ma Z, Ma S, Si J, Wu Z, Zhai J, Ma Y, Fan Z, Chen S, Huang H, Zhang D, Bao Y, Li R, Xie J. Nucleic acids research, Volume 52, Issue D1, 2024 |
| 2024 | CROST: a comprehensive repository of spatial transcriptomics.Wang G, Wu S, Xiong Z, Qu H, Fang X, Bao Y. Nucleic acids research, Volume 52, Issue D1, 2024 |
| 2024 | TargetGene: a comprehensive database of cell-type-specific target genes for genetic variants.Lin S, Wu S, Zhao W, Fang Z, Kang H, Liu X, Pan S, Yu F, Bao Y, Jia P. Nucleic acids research, Volume 52, Issue D1, 2024 |
| 2024 | HALL: a comprehensive database for human aging and longevity studies.Li H, Wu S, Li J, Xiong Z, Yang K, Ye W, Ren J, Wang Q, Xiong M, Zheng Z, Zhang S, Han Z, Yang P, Jiang B, Ping J, Zuo Y, Lu X, Zhai Q, Yan H, Wang S, Ma S, Zhang B, Ye J, Qu J, Yang YG, Zhang F, Liu GH, Bao Y, Zhang W. Nucleic acids research, Volume 52, Issue D1, 2024 |
| 2024 | Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2024.CNCB-NGDC Members and Partners . Nucleic acids research, Volume 52, Issue D1, 2024 |
| 2024 | HervD Atlas: a curated knowledgebase of associations between human endogenous retroviruses and diseases.Li C, Qian Q, Yan C, Lu M, Li L, Li P, Fan Z, Lei W, Shang K, Wang P, Wang J, Lu T, Huang Y, Yang H, Wei H, Han J, Xiao J, Chen F. Nucleic acids research, Volume 52, Issue D1, 2024 |
| 2023 | Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2023.CNCB-NGDC Members and Partners. Nucleic acids research, Volume 51, Issue D1, 2023 |
| 2023 | ASCancer Atlas: a comprehensive knowledgebase of alternative splicing in human cancers.Wu S, Huang Y, Zhang M, Gong Z, Wang G, Zheng X, Zong W, Zhao W, Xing P, Li R, Liu Z, Bao Y. Nucleic acids research, Volume 51, Issue D1, 2023 |
| 2023 | Brain Catalog: a comprehensive resource for the genetic landscape of brain-related traits.Pan S, Kang H, Liu X, Lin S, Yuan N, Zhang Z, Bao Y, Jia P. Nucleic acids research, Volume 51, Issue D1, 2023 |
| 2023 | Cell Taxonomy: a curated repository of cell types with multifaceted characterization.Jiang S, Qian Q, Zhu T, Zong W, Shang Y, Jin T, Zhang Y, Chen M, Wu Z, Chu Y, Zhang R, Luo S, Jing W, Zou D, Bao Y, Xiao J, Zhang Z. Nucleic acids research, Volume 51, Issue D1, 2023 |
| 2023 | GWAS Atlas: an updated knowledgebase integrating more curated associations in plants and animals.Liu X, Tian D, Li C, Tang B, Wang Z, Zhang R, Pan Y, Wang Y, Zou D, Zhang Z, Song S. Nucleic acids research, Volume 51, Issue D1, 2023 |
| 2023 | HGD: an integrated homologous gene database across multiple species.Duan G, Wu G, Chen X, Tian D, Li Z, Sun Y, Du Z, Hao L, Song S, Gao Y, Xiao J, Zhang Z, Bao Y, Tang B, Zhao W. Nucleic acids research, Volume 51, Issue D1, 2023 |
| 2023 | LncBook 2.0: integrating human long non-coding RNAs with multi-omics annotations.Li Z, Liu L, Feng C, Qin Y, Xiao J, Zhang Z, Ma L. Nucleic acids research, Volume 51, Issue D1, 2023 |
| 2023 | MethBank 4.0: an updated database of DNA methylation across a variety of species.Zhang M, Zong W, Zou D, Wang G, Zhao W, Yang F, Wu S, Zhang X, Guo X, Ma Y, Xiong Z, Zhang Z, Bao Y, Li R. Nucleic acids research, Volume 51, Issue D1, 2023 |
| 2023 | ProPan: a comprehensive database for profiling prokaryotic pan-genome dynamics.Zhang Y, Zhang H, Zhang Z, Qian Q, Zhang Z, Xiao J. Nucleic acids research, Volume 51, Issue D1, 2023 |
| 2023 | TWAS Atlas: a curated knowledgebase of transcriptome-wide association studies.Lu M, Zhang Y, Yang F, Mai J, Gao Q, Xu X, Kang H, Hou L, Shang Y, Qain Q, Liu J, Jiang M, Zhang H, Bu C, Wang J, Zhang Z, Zhang Z, Zeng J, Li J, Xiao J. Nucleic acids research, Volume 51, Issue D1, 2023 |
| 2023 | Accurate identification of taxon-specific molecular markers in plants based on DNA signature sequence.Hua Z, Jiang C, Song S, Tian D, Chen Z, Jin Y, Zhao Y, Zhou J, Zhang Z, Huang L, Yuan Y. Molecular ecology resources, Volume 23, Issue 1, 2023 |
| 2023 | Host-mediated RNA editing in viruses.Zhu T, Niu G, Zhang Y, Chen M, Li CY, Hao L, Zhang Z. Biology direct, Volume 18, Issue 1, 2023 |
| 2023 | McAN: a novel computational algorithm and platform for constructing and visualizing haplotype networks.Li L, Xu B, Tian D, Wang A, Zhu J, Li C, Li N, Zhao W, Shi L, Xue Y, Zhang Z, Bao Y, Zhao W, Song S. Briefings in bioinformatics, Volume 24, Issue 3, 2023 |
| 2023 | A Comprehensive Benchmark of Transcriptomic Biomarkers for Immune Checkpoint Blockades.Kang H, Zhu X, Cui Y, Xiong Z, Zong W, Bao Y, Jia P. Cancers, Volume 15, Issue 16, 2023 |
| 2023 | Transcriptome-wide association studies: recent advances in methods, applications and available databases.Mai J, Lu M, Gao Q, Zeng J, Xiao J. Communications biology, Volume 6, Issue 1, 2023 |
| 2023 | CCLHunter: An efficient toolkit for cancer cell line authentication.Bu C, Zheng X, Mai J, Nie Z, Zeng J, Qian Q, Xu T, Sun Y, Bao Y, Xiao J. Computational and structural biotechnology journal, Volume 21, Issue , 2023 |
| 2023 | OBIA: An Open Biomedical Imaging Archive.Jin E, Zhao D, Wu G, Zhu J, Wang Z, Wei Z, Zhang S, Wang A, Tang B, Chen X, Sun Y, Zhang Z, Zhao W, Meng Y. Genomics, proteomics & bioinformatics, Volume 21, Issue 5, 2023 |
| 2023 | RCoV19: A One-stop Hub for SARS-CoV-2 Genome Data Integration, Variant Monitoring, and Risk Pre-warning.Li C, Ma L, Zou D, Zhang R, Bai X, Li L, Wu G, Huang T, Zhao W, Jin E, Bao Y, Song S. Genomics, proteomics & bioinformatics, Volume 21, Issue 5, 2023 |
| 2023 | T2T-YAO, T2T-SHUN, and more.Xiao J, Yu J. Genomics, proteomics & bioinformatics, Volume , Issue , 2023 |
| 2023 | Database Commons: A Catalog of Worldwide Biological Databases.Ma L, Zou D, Liu L, Shireen H, Abbasi AA, Bateman A, Xiao J, Zhao W, Bao Y, Zhang Z. Genomics, proteomics & bioinformatics, Volume 21, Issue 5, 2023 |
| 2023 | From BIG Data Center to China National Center for Bioinformation.Bao Y, Xue Y. Genomics, proteomics & bioinformatics, Volume 21, Issue 5, 2023 |
| 2023 | The Snapdragon Genomes Reveal the Evolutionary Dynamics of the S-Locus Supergene.Zhu S, Zhang Y, Copsy L, Han Q, Zheng D, Coen E, Xue Y. Molecular biology and evolution, Volume 40, Issue 4, 2023 |
| 2023 | MACdb: A Curated Knowledgebase for Metabolic Associations across Human Cancers.Sun Y, Zheng X, Wang G, Wang Y, Chen X, Sun J, Xiong Z, Zhang S, Wang T, Fan Z, Bu C, Bao Y, Zhao W. Molecular cancer research : MCR, Volume 21, Issue 7, 2023 |
| 2023 | SoyOmics: A deeply integrated database on soybean multi-omics.Liu Y, Zhang Y, Liu X, Shen Y, Tian D, Yang X, Liu S, Ni L, Zhang Z, Song S, Tian Z. Molecular plant, Volume 16, Issue 5, 2023 |
| 2023 | The contribution of databases towards understanding the universe of long non-coding RNAs.Ma L, Zhang Z. Nature reviews. Molecular cell biology, Volume 24, Issue 9, 2023 |
| 2023 | Four principles to establish a universal virus taxonomy.Simmonds P, Adriaenssens EM, Zerbini FM, Abrescia NGA, Aiewsakun P, Alfenas-Zerbini P, Bao Y, Barylski J, Drosten C, Duffy S, Duprex WP, Dutilh BE, Elena SF, García ML, Junglen S, Katzourakis A, Koonin EV, Krupovic M, Kuhn JH, Lambert AJ, Lefkowitz EJ, Łobocka M, Lood C, Mahony J, Meier-Kolthoff JP, Mushegian AR, Oksanen HM, Poranen MM, Reyes-Muñoz A, Robertson DL, Roux S, Rubino L, Sabanadzovic S, Siddell S, Skern T, Smith DB, Sullivan MB, Suzuki N, Turner D, Van Doorslaer K, Vandamme AM, Varsani A, Vasilakis N. PLoS biology, Volume 21, Issue 2, 2023 |
| 2022 | scMethBank: a database for single-cell whole genome DNA methylation maps.Zong W, Kang H, Xiong Z, Ma Y, Jin T, Gong Z, Yi L, Zhang M, Wu S, Wang G, Bao Y, Li R. Nucleic acids research, Volume 50, Issue D1, 2022 |
| 2022 | EWAS Open Platform: integrated data, knowledge and toolkit for epigenome-wide association study.Xiong Z, Yang F, Li M, Ma Y, Zhao W, Wang G, Li Z, Zheng X, Zou D, Zong W, Kang H, Jia Y, Li R, Zhang Z, Bao Y. Nucleic acids research, Volume 50, Issue D1, 2022 |
| 2022 | Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2022.CNCB-NGDC Members and Partners. Nucleic acids research, Volume 50, Issue D1, 2022 |
| 2022 | CancerSCEM: a database of single-cell expression map across various human cancers.Zeng J, Zhang Y, Shang Y, Mai J, Shi S, Lu M, Bu C, Zhang Z, Zhang Z, Li Y, Du Z, Xiao J. Nucleic acids research, Volume 50, Issue D1, 2022 |
| 2022 | Gene Expression Nebulas (GEN): a comprehensive data portal integrating transcriptomic profiles across multiple species at both bulk and single-cell levels.Zhang Y, Zou D, Zhu T, Xu T, Chen M, Niu G, Zong W, Pan R, Jing W, Sang J, Liu C, Xiong Y, Sun Y, Zhai S, Chen H, Zhao W, Xiao J, Bao Y, Hao L, Zhang Z. Nucleic acids research, Volume 50, Issue D1, 2022 |
| 2022 | BrainBase: a curated knowledgebase for brain diseases.Liu L, Zhang Y, Niu G, Li Q, Li Z, Zhu T, Feng C, Liu X, Zhang Y, Xu T, Chen R, Teng X, Zhang R, Zou D, Ma L, Zhang Z. Nucleic acids research, Volume 50, Issue D1, 2022 |
| 2022 | CompoDynamics: a comprehensive database for characterizing sequence composition dynamics.Jiang S, Du Q, Feng C, Ma L, Zhang Z. Nucleic acids research, Volume 50, Issue D1, 2022 |
| 2022 | LncRNAWiki 2.0: a knowledgebase of human long non-coding RNAs with enhanced curation model and database system.Liu L, Li Z, Liu C, Zou D, Li Q, Feng C, Jing W, Luo S, Zhang Z, Ma L. Nucleic acids research, Volume 50, Issue D1, 2022 |
| 2022 | Regeneration Roadmap: database resources for regenerative biology.Kang W, Jin T, Zhang T, Ma S, Yan H, Liu Z, Ji Z, Cai Y, Wang S, Song M, Ren J, Hu B, Zhou Q, Zhang W, Qu J, Bao Y, Liu GH. Nucleic acids research, Volume 50, Issue D1, 2022 |
| 2022 | CeDR Atlas: a knowledgebase of cellular drug response.Wang YY, Kang H, Xu T, Hao L, Bao Y, Jia P. Nucleic acids research, Volume 50, Issue D1, 2022 |
| 2022 | Coronavirus GenBrowser for monitoring the transmission and evolution of SARS-CoV-2.Yu D, Yang X, Tang B, Pan YH, Yang J, Duan G, Zhu J, Hao ZQ, Mu H, Dai L, Hu W, Zhang M, Cui Y, Jin T, Li CP, Ma L, Language translation team, Su X, Zhang G, Zhao W, Li H. Briefings in bioinformatics, Volume 23, Issue 2, 2022 |
| 2022 | TSomVar: a tumor-only somatic and germline variant identification method with random forest.Shi S, Wang Q, Shang Y, Bu C, Lu M, Jiang M, Zhang H, Yu S, Zeng J, Zhang Z, Du Z, Xiao J. Briefings in bioinformatics, Volume 23, Issue 5, 2022 |
| 2022 | CCAS: One-stop and comprehensive annotation system for individual cancer genome at multi-omics level.Zheng X, Zong W, Li Z, Ma Y, Sun Y, Xiong Z, Wu S, Yang F, Zhao W, Bu C, Du Z, Xiao J, Bao Y. Frontiers in genetics, Volume 13, Issue , 2022 |
| 2022 | Diagnosis and Prediction of Endometrial Carcinoma Using Machine Learning and Artificial Neural Networks Based on Public Databases.Zhao D, Zhang Z, Wang Z, Du Z, Wu M, Zhang T, Zhou J, Zhao W, Meng Y. Genes, Volume 13, Issue 6, 2022 |
| 2022 | Identification of COVID-19-Associated DNA Methylation Variations by Integrating Methylation Array and scRNA-Seq Data at Cell-Type Resolution.Wang G, Xiong Z, Yang F, Zheng X, Zong W, Li R, Bao Y. Genes, Volume 13, Issue 7, 2022 |
| 2022 | Genomic Perspectives on the Emerging SARS-CoV-2 Omicron Variant.Ma W, Yang J, Fu H, Su C, Yu C, Wang Q, de Vasconcelos ATR, Bazykin GA, Bao Y, Li M. Genomics, proteomics & bioinformatics, Volume 20, Issue 1, 2022 |
| 2022 | KaKs_Calculator 3.0: Calculating Selective Pressure on Coding and Non-coding Sequences.Zhang Z. Genomics, proteomics & bioinformatics, Volume 20, Issue 3, 2022 |
| 2022 | Ongoing Positive Selection Drives the Evolution of SARS-CoV-2 Genomes.Hou Y, Zhao S, Liu Q, Zhang X, Sha T, Su Y, Zhao W, Bao Y, Xue Y, Chen H. Genomics, proteomics & bioinformatics, Volume 20, Issue 6, 2022 |
| 2022 | Towards comprehensive integration and curation of chloroplast genomes.Hua Z, Tian D, Jiang C, Song S, Chen Z, Zhao Y, Jin Y, Huang L, Zhang Z, Yuan Y. Plant biotechnology journal, Volume 20, Issue 12, 2022 |
| 2022 | MPoxVR: A comprehensive genomic resource for monkeypox virus variant surveillance.Ma Y, Chen M, Bao Y, Song S, MPoxVR Team. Innovation (Cambridge (Mass.)), Volume 3, Issue 5, 2022 |
| 2022 | The C-Terminal Repeat Units of SpaA Mediate Adhesion of Erysipelothrix rhusiopathiae to Host Cells and Regulate Its Virulence.Wu C, Zhang Z, Kang C, Zhang Q, Zhu W, Zhang Y, Zhang H, Xiao J, Jin M. Biology, Volume 11, Issue 7, 2022 |
| 2021 | Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2021.CNCB-NGDC Members and Partners. Nucleic Acids Res, Volume 49, Issue D1, 2021 |
| 2021 | Genome Variation Map: a worldwide collection of genome variations across multiple species.Li C, Tian D, Tang B, Liu X, Teng X, Zhao W, Zhang Z, Song S. Nucleic Acids Res, Volume 49, Issue D1, 2021 |
| 2021 | LncExpDB: an expression database of human long non-coding RNAs.Li Z, Liu L, Jiang S, Li Q, Feng C, Du Q, Zou D, Xiao J, Zhang Z, Ma L. Nucleic Acids Res, Volume 49, Issue D1, 2021 |
| 2021 | Aging Atlas: a multi-omics database for aging biology.Aging Atlas Consortium. Nucleic Acids Res, Volume 49, Issue D1, 2021 |
| 2021 | SorGSD: updating and expanding the sorghum genome science database with new contents and tools.Liu Y, Wang Z, Wu X, Zhu J, Luo H, Tian D, Li C, Luo J, Zhao W, Hao H, Jing HC. Biotechnology for biofuels, Volume 14, Issue 1, 2021 |
| 2021 | Molecular evolutionary analysis of human primary microcephaly genes.Pervaiz N, Kang H, Bao Y, Abbasi AA. BMC ecology and evolution, Volume 21, Issue 1, 2021 |
| 2021 | RefRGim: an intelligent reference panel reconstruction method for genotype imputation with convolutional neural networks.Shi S, Qian Q, Yu S, Wang Q, Wang J, Zeng J, Du Z, Xiao J. Briefings in bioinformatics, Volume 22, Issue 6, 2021 |
| 2021 | iSheep: an Integrated Resource for Sheep Genome, Variant and Phenotype.Wang ZH, Zhu QH, Li X, Zhu JW, Tian DM, Zhang SS, Kang HL, Li CP, Dong LL, Zhao WM, Li MH. Frontiers in genetics, Volume 12, Issue , 2021 |
| 2021 | Comprehensive Analysis of Expression Regulation for RNA m6A Regulators With Clinical Significance in Human Cancers.Liu X, Wang P, Teng X, Zhang Z, Song S. Frontiers in oncology, Volume 11, Issue , 2021 |
| 2021 | Genome Warehouse: A Public Repository Housing Genome-scale Data.Chen M, Ma Y, Wu S, Zheng X, Kang H, Sang J, Xu X, Hao L, Li Z, Gong Z, Xiao J, Zhang Z, Zhao W, Bao Y. Genomics, proteomics & bioinformatics, Volume , Issue , 2021 |
| 2021 | The Genome Sequence Archive Family: Toward Explosive Data Growth and Diverse Data Types.Chen T, Chen X, Zhang S, Zhu J, Tang B, Wang A, Dong L, Zhang Z, Yu C, Sun Y, Chi L, Chen H, Zhai S, Sun Y, Lan L, Zhang X, Xiao J, Bao Y, Wang Y, Zhang Z, Zhao W. Genomics, proteomics & bioinformatics, Volume , Issue , 2021 |
| 2021 | Genomic Epidemiology of SARS-CoV-2 in Pakistan.Song S, Li C, Kang L, Tian D, Badar N, Ma W, Zhao S, Jiang X, Wang C, Sun Y, Li W, Lei M, Li S, Qi Q, Ikram A, Salman M, Umair M, Shireen H, Batool F, Zhang B, Chen H, Yang Y, Ali Abbasi A, Li M, Xue Y, Bao Y. Genomics, proteomics & bioinformatics, Volume , Issue , 2021 |
| 2021 | GSA-Human: Genome Sequence Archive for Human.Zhang SS, Chen X, Chen TT, Zhu JW, Tang BX, Wang AK, Dong LL, Zhang ZW, Sun YL, Yu CX, Zhai S, Sun YB, Chen HX, Du ZL, Xiao JF, Zhang Z, Bao YM, Wang YQ, Zhao WM. Yi chuan = Hereditas, Volume 43, Issue 10, 2021 |
| 2021 | GMQN: A Reference-Based Method for Correcting Batch Effects and Probe Bias in HumanMethylation BeadChip.Xiong Z, Li M, Ma Y, Li R, Bao Y. Frontiers in genetics, Volume 12, Issue , 2021 |
| 2020 | GWAS Atlas: a curated resource of genome-wide variant-trait associations in plants and animals.Tian D, Wang P, Tang B, Teng X, Li C, Liu X, Zou D, Song S, Zhang Z. Nucleic Acids Res, Volume 48, Issue D1, 2020 |
| 2020 | EWAS Data Hub: a resource of DNA methylation array data and metadata.Xiong Z, Li M, Yang F, Ma Y, Sang J, Li R, Li Z, Zhang Z, Bao Y. Nucleic Acids Res, Volume 48, Issue D1, 2020 |
| 2020 | LSD 3.0: a comprehensive resource for the leaf senescence research community.Li Z, Zhang Y, Zou D, Zhao Y, Wang HL, Zhang Y, Xia X, Luo J, Guo H, Zhang Z. Nucleic Acids Res, Volume 48, Issue D1, 2020 |
| 2020 | PADS Arsenal: a database of prokaryotic defense systems related genes.Zhang Y, Zhang Z, Zhang H, Zhao Y, Zhang Z, Xiao J. Nucleic Acids Res, Volume 48, Issue D1, 2020 |
| 2020 | Database Resources of the National Genomics Data Center in 2020.National Genomics Data Center Members and Partners. Nucleic Acids Res, Volume 48, Issue D1, 2020 |
| 2020 | An online coronavirus analysis platform from the National Genomics Data Center.Gong Z, Zhu JW, Li CP, Jiang S, Ma LN, Tang BX, Zou D, Chen ML, Sun YB, Song SH, Zhang Z, Xiao JF, Xue YB, Bao YM, Du ZL, Zhao WM. Zool Res, Volume 41, Issue 6, 2020 |
| 2020 | Multi-omics annotation of human long non-coding RNAs.Li Q, Li Z, Feng C, Jiang S, Zhang Z, Ma L. Biochem Soc Trans, Volume 48, Issue 4, 2020 |
| 2020 | SR4R: An Integrative SNP Resource for Genomic Breeding and Population Research in Rice.Yan J, Zou D, Li C, Zhang Z, Song S, Wang X. Genomics Proteomics Bioinformatics, Volume 18, Issue 2, 2020 |
| 2020 | IC4R-2.0: Rice Genome Reannotation Using Massive RNA-seq Data.Sang J, Zou D, Wang Z, Wang F, Zhang Y, Xia L, Li Z, Ma L, Li M, Xu B, Liu X, Wu S, Liu L, Niu G, Li M, Luo Y, Hu S, Hao L, Zhang Z. Genomics Proteomics Bioinformatics, Volume 18, Issue 2, 2020 |
| 2020 | Computational identification and characterization of glioma candidate biomarkers through multi-omics integrative profiling.Liu L, Wang G, Wang L, Yu C, Li M, Song S, Hao L, Ma L, Zhang Z. Biol Direct, Volume 15, Issue 1, 2020 |
| 2020 | The Elements of Data Sharing.Zhang Z, Song S, Yu J, Zhao W, Xiao J, Bao Y. Genomics Proteomics Bioinformatics, Volume 18, Issue 1, 2020 |
| 2020 | The 2019 novel coronavirus resource.Zhao WM, Song SH, Chen ML, Zou D, Ma LN, Ma YK, Li RJ, Hao LL, Li CP, Tian DM, Tang BX, Wang YQ, Zhu JW, Chen HX, Zhang Z, Xue YB, Bao YM. Yi Chuan, Volume 42, Issue 2, 2020 |
| 2020 | Molecular evolutionary and structural analysis of human UCHL1 gene demonstrates the relevant role of intragenic epistasis in Parkinson's disease and other neurological disorders.Nawaz MS, Asghar R, Pervaiz N, Ali S, Hussain I, Xing P, Bao Y, Abbasi AA. BMC Evol Biol, Volume 20, Issue 1, 2020 |
| 2020 | Mapping regulatory variants controlling gene expression in drought response and tolerance in maize.Liu S, Li C, Wang H, Wang S, Yang S, Liu X, Yan J, Li B, Beatty M, Zastrow-Hayes G, Song S, Qin F. Genome Biol, Volume 21, Issue 1, 2020 |
| 2020 | Metagenomic analysis of relative abundance and diversity of bacterial microbiota in Bemisia tabaci infesting cotton crop in Pakistan.Shah SHJ, Malik AH, Zhang B, Bao Y, Qazi J. Infect Genet Evol, Volume 84, Issue NULL, 2020 |
| 2019 | Computational determination of gene age and characterization of evolutionary dynamics in human.Yin H, Li M, Xia L, He C, Zhang Z. Brief Bioinform, Volume 20, Issue 6, 2019 |
| 2019 | LncBook: a curated knowledgebase of human long non-coding RNAs.Ma L, Cao J, Liu L, Du Q, Li Z, Zou D, Bajic VB, Zhang Z. Nucleic Acids Res, Volume 47, Issue D1, 2019 |
| 2019 | NucMap: a database of genome-wide nucleosome positioning map across species.Zhao Y, Wang J, Liang F, Liu Y, Wang Q, Zhang H, Jiang M, Zhang Z, Zhao W, Bao Y, Zhang Z, Wu J, Asmann YW, Li R, Xiao J. Nucleic Acids Res, Volume 47, Issue D1, 2019 |
| 2019 | Editome Disease Knowledgebase (EDK): a curated knowledgebase of editome-disease associations in human.Niu G, Zou D, Li M, Zhang Y, Sang J, Xia L, Li M, Liu L, Cao J, Zhang Y, Wang P, Hu S, Hao L, Zhang Z. Nucleic Acids Res, Volume 47, Issue D1, 2019 |
| 2019 | Database Resources of the BIG Data Center in 2019.BIG Data Center Members. Nucleic Acids Res, Volume 47, Issue D1, 2019 |
| 2019 | EWAS Atlas: a curated knowledgebase of epigenome-wide association studies.Li M, Zou D, Li Z, Gao R, Sang J, Zhang Y, Li R, Xia L, Zhang T, Niu G, Bao Y, Zhang Z. Nucleic Acids Res, Volume 47, Issue D1, 2019 |
| 2019 | Plant editosome database: a curated database of RNA editosome in plants.Li M, Xia L, Zhang Y, Niu G, Li M, Wang P, Zhang Y, Sang J, Zou D, Hu S, Hao L, Zhang Z. Nucleic Acids Res, Volume 47, Issue D1, 2019 |
| 2019 | iDog: an integrated resource for domestic dogs and wild canids.Tang B, Zhou Q, Dong L, Li W, Zhang X, Lan L, Zhai S, Xiao J, Zhang Z, Bao Y, Zhang YP, Wang GD, Zhao W. Nucleic Acids Res, Volume 47, Issue D1, 2019 |
| 2019 | RNAcentral: a hub of information for non-coding RNA sequences.The RNAcentral Consortium. Nucleic Acids Res, Volume 47, Issue D1, 2019 |
| 2019 | Characterization of Proteome Variation During Modern Maize Breeding.Jiang LG, Li B, Liu SX, Wang HW, Li CP, Song SH, Beatty M, Zastrow-Hayes G, Yang XH, Qin F, He Y. Mol Cell Proteomics, Volume 18, Issue 2, 2019 |
| 2019 | Characterization and identification of long non-coding RNAs based on feature relationship.Wang G, Yin H, Li B, Yu C, Wang F, Xu X, Cao J, Bao Y, Wang L, Abbasi AA, Bajic VB, Ma L, Zhang Z. Bioinformatics, Volume 35, Issue 17, 2019 |
| 2019 | Database Resources in BIG Data Center: Submission, Archiving, and Integration of Big Data in Plant Science.Song S, Zhang Z. Mol Plant, Volume 12, Issue 3, 2019 |
| 2019 | Molecular evolutionary and structural analysis of familial exudative vitreoretinopathy associated FZD4 gene.Seemab S, Pervaiz N, Zehra R, Anwar S, Bao Y, Abbasi AA. BMC Evol Biol, Volume 19, Issue 1, 2019 |
| 2019 | Taxonomy of the order Mononegavirales: update 2019.Amarasinghe GK, Ayllón MA, Bào Y, Basler CF, Bavari S, Blasdell KR, Briese T, Brown PA, Bukreyev A, Balkema-Buschmann A, Buchholz UJ, Chabi-Jesus C, Chandran K, Chiapponi C, Crozier I, de Swart RL, Dietzgen RG, Dolnik O, Drexler JF, Dürrwald R, Dundon WG, Duprex WP, Dye JM, Easton AJ, Fooks AR, Formenty PBH, Fouchier RAM, Freitas-Astúa J, Griffiths A, Hewson R, Horie M, Hyndman TH, Jiāng D, Kitajima EW, Kobinger GP, Kondō H, Kurath G, Kuzmin IV, Lamb RA, Lavazza A, Lee B, Lelli D, Leroy EM, Lǐ J, Maes P, Marzano SL, Moreno A, Mühlberger E, Netesov SV, Nowotny N, Nylund A, Økland AL, Palacios G, Pályi B, Pawęska JT, Payne SL, Prosperi A, Ramos-González PL, Rima BK, Rota P, Rubbenstroth D, Shī M, Simmonds P, Smither SJ, Sozzi E, Spann K, Stenglein MD, Stone DM, Takada A, Tesh RB, Tomonaga K, Tordo N, Towner JS, van den Hoogen B, Vasilakis N, Wahl V, Walker PJ, Wang LF, Whitfield AE, Williams JV, Zerbini FM, Zhāng T, Zhang YZ, Kuhn JH. Arch Virol, Volume 164, Issue 7, 2019 |
| 2019 | Community Curation and Expert Curation of Human Long Noncoding RNAs with LncRNAWiki and LncBook.Ma L, Cao J, Liu L, Li Z, Shireen H, Pervaiz N, Batool F, Raza RZ, Zou D, Bao Y, Abbasi AA, Zhang Z. Curr Protoc Bioinformatics, Volume 67, Issue 1, 2019 |
| 2019 | Evolutionary history of the human multigene families reveals widespread gene duplications throughout the history of animals.Pervaiz N, Shakeel N, Qasim A, Zehra R, Anwar S, Rana N, Xue Y, Zhang Z, Bao Y, Abbasi AA. BMC Evol Biol, Volume 19, Issue 1, 2019 |
| 2018 | ICG: a wiki-driven knowledgebase of internal control genes for RT-qPCR normalization.Sang J, Wang Z, Li M, Cao J, Niu G, Xia L, Zou D, Wang F, Xu X, Han X, Fan J, Yang Y, Zuo W, Zhang Y, Zhao W, Bao Y, Xiao J, Hu S, Hao L, Zhang Z. Nucleic Acids Res, Volume 46, Issue D1, 2018 |
| 2018 | Genome Variation Map: a data repository of genome variations in BIG Data Center.Song S, Tian D, Li C, Tang B, Dong L, Xiao J, Bao Y, Zhao W, He H, Zhang Z. Nucleic Acids Res, Volume 46, Issue D1, 2018 |
| 2018 | MarR-Family Transcription Factor HpaR Controls Expression of the vgrR-vgrS Operon of Xanthomonas campestris pv. campestris.Pan Y, Liang F, Li RJ, Qian W. Mol Plant Microbe Interact, Volume 31, Issue 3, 2018 |
| 2018 | Database Resources of the BIG Data Center in 2018.BIG Data Center Members. Nucleic Acids Res, Volume 46, Issue D1, 2018 |
| 2018 | MethBank 3.0: a database of DNA methylomes across a variety of species.Li R, Liang F, Li M, Zou D, Sun S, Zhao Y, Zhao W, Bao Y, Xiao J, Zhang Z. Nucleic Acids Res, Volume 46, Issue D1, 2018 |
| 2018 | PGAP-X: extension on pan-genome analysis pipeline.Zhao Y, Sun C, Zhao D, Zhang Y, You Y, Jia X, Yang J, Wang L, Wang J, Fu H, Kang Y, Chen F, Yu J, Wu J, Xiao J. BMC Genomics, Volume 19, Issue Suppl 1, 2018 |
| 2018 | Biocuration: Distilling data into knowledge.International Society for Biocuration. PLoS Biol, Volume 16, Issue 4, 2018 |
| 2018 | RNA m6A methylation participates in regulation of postnatal development of the mouse cerebellum.Ma C, Chang M, Lv H, Zhang ZW, Zhang W, He X, Wu G, Zhao S, Zhang Y, Wang D, Teng X, Liu C, Li Q, Klungland A, Niu Y, Song S, Tong WM. Genome Biol, Volume 19, Issue 1, 2018 |
| 2018 | Bioinformatics Commons: The Cornerstone of Life and Health Sciences.Zhang Z, Xue Y, Zhao F. Genomics Proteomics Bioinformatics, Volume 16, Issue 4, 2018 |
| 2018 | PGAweb: A Web Server for Bacterial Pan-Genome Analysis.Chen X, Zhang Y, Zhang Z, Zhao Y, Sun C, Yang M, Wang J, Liu Q, Zhang B, Chen M, Yu J, Wu J, Jin Z, Xiao J. Front Microbiol, Volume 9, Issue NULL, 2018 |
| 2018 | [Database resources of the reference genome and genetic variation maps for the Chinese population].Song S, Teng XF, Xiao JF. Yi Chuan, Volume 40, Issue 11, 2018 |
| 2018 | [GSA: Genome Sequence Archive].Zhang SS, Chen TT, Zhu JW, Zhou Q, Chen X, Wang YQ, Zhao WM. Yi Chuan, Volume 40, Issue 11, 2018 |
| 2018 | [Prospects for national biological big data centers].Ma YK, Bao YM. Yi Chuan, Volume 40, Issue 11, 2018 |
| 2018 | [The BIG Data Center's database resources].Zhang YS, Xia L, Sang J, Li M, Liu L, Li MW, Niu GY, Cao JB, Teng XF, Zhou Q, Zhang Z. Yi Chuan, Volume 40, Issue 11, 2018 |
| 2018 | Rice Genomics: over the Past Two Decades and into the Future.Song S, Tian D, Zhang Z, Hu S, Yu J. Genomics Proteomics Bioinformatics, Volume 16, Issue 6, 2018 |
| 2017 | MTD: a mammalian transcriptomic database to explore gene expression and regulation.Sheng X, Wu J, Sun Q, Li X, Xian F, Sun M, Fang W, Chen M, Yu J, Xiao J. Brief Bioinform, Volume 18, Issue 1, 2017 |
| 2017 | The BIG Data Center: from deposition to integration to translation.BIG Data Center Members. Nucleic Acids Res, Volume 45, Issue D1, 2017 |
| 2017 | GAAP: Genome-organization-framework-Assisted Assembly Pipeline for prokaryotic genomes.Yuan L, Yu Y, Zhu Y, Li Y, Li C, Li R, Ma Q, Siu GK, Yu J, Jiang T, Xiao J, Kang Y. BMC Genomics, Volume 18, Issue Suppl 1, 2017 |
| 2017 | Transcriptome analysis reveals dynamic changes in coxsackievirus A16 infected HEK 293T cells.Jin J, Li R, Jiang C, Zhang R, Ge X, Liang F, Sheng X, Dai W, Chen M, Wu J, Xiao J, Su W. BMC Genomics, Volume 18, Issue Suppl 1, 2017 |
| 2017 | CloudPhylo: a fast and scalable tool for phylogeny reconstruction.Xu X, Ji Z, Zhang Z. Bioinformatics, Volume 33, Issue 3, 2017 |
| 2017 | GSA: Genome Sequence Archive.Wang Y, Song F, Zhu J, Zhang S, Yang Y, Chen T, Tang B, Dong L, Ding N, Zhang Q, Bai Z, Dong X, Chen H, Sun M, Zhai S, Sun Y, Yu L, Lan L, Xiao J, Fang X, Lei H, Zhang Z, Zhao W. Genomics Proteomics Bioinformatics, Volume 15, Issue 1, 2017 |
| 2017 | Rice Expression Database (RED): An integrated RNA-Seq-derived gene expression database for rice.Xia L, Zou D, Sang J, Xu X, Yin H, Li M, Wu S, Hu S, Hao L, Zhang Z. J Genet Genomics, Volume 44, Issue 5, 2017 |
| 2017 | Synonymous codon usage analysis of hand, foot and mouth disease viruses: A comparative study on coxsackievirus A6, A10, A16, and enterovirus 71 from 2008 to 2015.Su W, Li X, Chen M, Dai W, Sun S, Wang S, Sheng X, Sun S, Gao C, Hou A, Zhou Y, Sun B, Gao F, Xiao J, Zhang Z, Jiang C. Infect Genet Evol, Volume 53, Issue NULL, 2017 |
| 2017 | DES-ncRNA: A knowledgebase for exploring information about human micro and long noncoding RNAs based on literature-mining.Salhi A, Essack M, Alam T, Bajic VP, Ma L, Radovanovic A, Marchand B, Schmeier S, Zhang Z, Bajic VB. RNA Biol, Volume 14, Issue 7, 2017 |
| 2017 | An Essential Regulatory System Originating from Polygenic Transcriptional Rewiring of PhoP-PhoQ of Xanthomonas campestris.Peng BY, Pan Y, Li RJ, Wei JW, Liang F, Wang L, Wang FF, Qian W. Genetics, Volume 206, Issue 4, 2017 |
| 2017 | Region-specific RNA m6A methylation represents a new layer of control in the gene regulatory network in the mouse brain.Chang M, Lv H, Zhang W, Ma C, He X, Zhao S, Zhang ZW, Zeng YX, Song S, Niu Y, Tong WM. Open Biol, Volume 7, Issue 9, 2017 |
| 2017 | Evolutionarily Conserved nodE, nodO, T1SS, and Hydrogenase System in Rhizobia of Astragalus membranaceus and Caragana intermedia.Yan H, Xie JB, Ji ZJ, Yuan N, Tian CF, Ji SK, Wu ZY, Zhong L, Chen WX, Du ZL, Wang ET, Chen WF. Front Microbiol, Volume 8, Issue NULL, 2017 |
| 2016 | Information Commons for Rice (IC4R).IC4R Project Consortium, Hao L, Zhang H, Zhang Z, Hu S, Xue Y. Nucleic Acids Res, Volume 44, Issue D1, 2016 |
| 2016 | Precision methylome characterization of Mycobacterium tuberculosis complex (MTBC) using PacBio single-molecule real-time (SMRT) technology.Zhu L, Zhong J, Jia X, Liu G, Kang Y, Dong M, Zhang X, Li Q, Yue L, Li C, Fu J, Xiao J, Yan J, Zhang B, Lei M, Chen S, Lv L, Zhu B, Huang H, Chen F. Nucleic Acids Res, Volume 44, Issue 2, 2016 |
| 2016 | SorGSD: a sorghum genome SNP database.Luo H, Zhao W, Wang Y, Xia Y, Wu X, Zhang L, Tang B, Zhu J, Fang L, Du Z, Bekele WA, Tai S, Jordan DR, Godwin ID, Snowdon RJ, Mace ES, Jing HC, Luo J. Biotechnol Biofuels, Volume 9, Issue NULL, 2016 |
| 2016 | Complete genome sequence and comparative genome analysis of a new special Yersinia enterocolitica.Shi G, Su M, Liang J, Duan R, Gu W, Xiao Y, Zhang Z, Qiu H, Zhang Z, Li Y, Zhang X, Ling Y, Song L, Chen M, Zhao Y, Wu J, Jing H, Xiao J, Wang X. Arch Microbiol, Volume 198, Issue 7, 2016 |
| 2016 | Randomness in Sequence Evolution Increases over Time.Wang G, Sun S, Zhang Z. PLoS One, Volume 11, Issue 5, 2016 |
| 2016 | Old genes experience stronger translational selection than young genes.Yin H, Ma L, Wang G, Li M, Zhang Z. Gene, Volume 590, Issue 1, 2016 |
| 2016 | Comparative Genomics Analysis of Streptomyces Species Reveals Their Adaptation to the Marine Environment and Their Diversity at the Genomic Level.Tian X, Zhang Z, Yang T, Chen M, Li J, Chen F, Yang J, Li W, Zhang B, Zhang Z, Wu J, Zhang C, Long L, Xiao J. Front Microbiol, Volume 7, Issue NULL, 2016 |
| 2016 | Genomic analysis of snub-nosed monkeys (Rhinopithecus) identifies genes and processes related to high-altitude adaptation.Yu L, Wang GD, Ruan J, Chen YB, Yang CP, Cao X, Wu H, Liu YH, Du ZL, Wang XP, Yang J, Cheng SC, Zhong L, Wang L, Wang X, Hu JY, Fang L, Bai B, Wang KL, Yuan N, Wu SF, Li BG, Zhang JG, Yang YQ, Zhang CL, Long YC, Li HS, Yang JY, Irwin DM, Ryder OA, Li Y, Wu CI, Zhang YP. Nat Genet, Volume 48, Issue 8, 2016 |
| 2016 | Pangenome Evidence for Higher Codon Usage Bias and Stronger Translational Selection in Core Genes of Escherichia coli.Sun S, Xiao J, Zhang H, Zhang Z. Front Microbiol, Volume 7, Issue NULL, 2016 |
| 2016 | Integrated analysis of phenome, genome, and transcriptome of hybrid rice uncovered multiple heterosis-related loci for yield increase.Li D, Huang Z, Song S, Xin Y, Mao D, Lv Q, Zhou M, Tian D, Tang M, Wu Q, Liu X, Chen T, Song X, Fu X, Zhao B, Liang C, Li A, Liu G, Li S, Hu S, Cao X, Yu J, Yuan L, Chen C, Zhu L. Proc Natl Acad Sci U S A, Volume 113, Issue 41, 2016 |
| 2016 | Characterization of Spectinomycin Resistance in Streptococcus suis Leads to Two Novel Insights into Drug Resistance Formation and Dissemination Mechanism.Huang K, Zhang Q, Song Y, Zhang Z, Zhang A, Xiao J, Jin M. Antimicrob Agents Chemother, Volume 60, Issue 10, 2016 |
| 2016 | Precision Medicine: What Challenges Are We Facing?Xue Y, Lameijer EW, Ye K, Zhang K, Chang S, Wang X, Wu J, Gao G, Zhao F, Li J, Han C, Xu S, Xiao J, Yang X, Ying X, Zhang X, Chen WH, Liu Y, Zhang Z, Huang K, Yu J. Genomics Proteomics Bioinformatics, Volume 14, Issue 5, 2016 |
| 2016 | What Signatures Dominantly Associate with Gene Age?Yin H, Wang G, Ma L, Yi SV, Zhang Z. Genome Biol Evol, Volume 8, Issue 10, 2016 |