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RNA Expression
Bulk RNA-seq Data AnalysisCancer Alternative Splicing AnalysisCCLHunterCIRI-deepCIRI3Cross-disease analysisDisease predictionEditing site annotationEditing site identificationEFDetectorFunGenGene-disease network constructionHELIXNCSelPredRNA-seq AnalysisSingle-cell RNA-seq Data AnalysisSPIRALTIVar diffTIVar predictVisualization of scRNA-seq Data Analysis Results
Home RNA Expression
HELIX
File Type
HELIX
HELIX

Data

Input(TSV)
Example file

Parameters

hg38
hg38
References
https://github.com/gyjames/HELIX
Instructions

HELIX is a deep learning model that integrates pre-mRNA sequence and RNA-binding protein (RBP) expression profiles to predict tissue- and condition-specific splicing patterns and transcript isoform usage.

Output of transcript model has 2 columns: transcript index, isoform usage

Contributor(s)
Zihan Zhou
zhouzihan2018m@big.ac.cn
#Runs
111
Open Result
Adipose_Subcutaneous|ENST00000544218.5 0.016763015 Adipose_Subcutaneous|ENST00000223324.3 0.9580719 Adipose_Subcutaneous|ENST00000640579.1 0.32960644 Adipose_Subcutaneous|ENST00000416611.5 0.40903094 Adipose_Subcutaneous|ENST00000536079.5 0.0011006733 Adipose_Subcutaneous|ENST00000453397.5 0.026989384 Adipose_Subcutaneous|ENST00000640697.1 0.08402606 Adipose_Subcutaneous|ENST00000432845.1 0.03113113 Adipose_Subcutaneous|ENST00000697859.1 0.046036582 Adipose_Subcutaneous|ENST00000682920.1 0.06855635 Adipose_Subcutaneous|ENST00000515299.5 0.025964651 Adipose_Subcutaneous|ENST00000635919.1 0.16510151 Adipose_Subcutaneous|ENST00000486524.1 0.06267304 Adipose_Subcutaneous|ENST00000352460.7 0.23311122 Adipose_Subcutaneous|ENST00000431062.5 0.9146842 Adipose_Subcutaneous|ENST00000282957.9 0.95959604 Adipose_Subcutaneous|ENST00000544429.5 0.018525515 Adipose_Subcutaneous|ENST00000356404.8 0.8736707 Adipose_Subcutaneous|ENST00000354291.8 0.008843881 Adipose_Subcutaneous|ENST00000415764.5 0.17589213 Adipose_Subcutaneous|ENST00000398129.5 0.71656567 Adipose_Subcutaneous|ENST00000527527.1 0.00049302826 Adipose_Subcutaneous|ENST00000456296.5 0.043706473 Adipose_Subcutaneous|ENST00000574740.1 0.95732915 Adipose_Subcutaneous|ENST00000449424.5 0.14079884 Adipose_Subcutaneous|ENST00000571023.1 0.07947388 Adipose_Subcutaneous|ENST00000468341.1 0.0048677637 Adipose_Subcutaneous|ENST00000552022.5 0.21221922 Adipose_Subcutaneous|ENST00000639082.1 0.15680069 Adipose_Subcutaneous|ENST00000575784.2 0.023691155 Adipose_Subcutaneous|ENST00000503780.6 0.6352008 Adipose_Subcutaneous|ENST00000456153.5 0.06621771 Adipose_Subcutaneous|ENST00000465718.1 0.0010715557 Adipose_Subcutaneous|ENST00000438490.2 0.9208995 Adipose_Subcutaneous|ENST00000486554.1 0.3316109 Adipose_Subcutaneous|ENST00000639873.1 0.115190856 Adipose_Subcutaneous|ENST00000536718.3 0.76103646 Adipose_Subcutaneous|ENST00000495949.1 0.0768956 Adipose_Subcutaneous|ENST00000549971.5 0.022703744 Adipose_Subcutaneous|ENST00000686058.1 0.409031 Adipose_Subcutaneous|ENST00000372390.8 0.2088625 Adipose_Subcutaneous|ENST00000544738.5 0.00568502 Adipose_Subcutaneous|ENST00000372596.5 0.5071127 Adipose_Subcutaneous|ENST00000569398.5 0.0020403108 Adipose_Subcutaneous|ENST00000547818.5 0.14179587 Adipose_Subcutaneous|ENST00000412732.5 0.27413774 Adipose_Subcutaneous|ENST00000510746.1 0.010018289 Adipose_Subcutaneous|ENST00000398822.7 0.3531744 Adipose_Subcutaneous|ENST00000432134.8 0.07546276 Adipose_Subcutaneous|ENST00000545042.1 0.0068843286 Adipose_Subcutaneous|ENST00000548536.1 0.029213605 Adipose_Subcutaneous|ENST00000543728.1 0.007785795 Adipose_Subcutaneous|ENST00000396791.7 0.5195981 Adipose_Subcutaneous|ENST00000567626.1 0.0017494886 Adipose_Subcutaneous|ENST00000301050.7 0.82458663 Adipose_Subcutaneous|ENST00000698202.1 0.15493695 Adipose_Subcutaneous|ENST00000538744.5 0.009492956 Adipose_Subcutaneous|ENST00000215832.11 0.96410674 Adipose_Subcutaneous|ENST00000238146.9 0.29180774 Adipose_Subcutaneous|ENST00000527103.1 0.00652627 Adipose_Subcutaneous|ENST00000436757.6 0.58521235 Adipose_Subcutaneous|ENST00000416293.7 0.044595253 Adipose_Subcutaneous|ENST00000497691.5 0.54554313 Adipose_Subcutaneous|ENST00000540763.5 0.019000083 Adipose_Subcutaneous|ENST00000294008.4 0.9367466 Adipose_Subcutaneous|ENST00000355665.7 0.1714724 Adipose_Subcutaneous|ENST00000372597.5 0.22155361 Adipose_Subcutaneous|ENST00000488592.1 0.06916462 Adipose_Subcutaneous|ENST00000503053.5 0.00020937959 Adipose_Subcutaneous|ENST00000457600.3 0.9798195 Adipose_Subcutaneous|ENST00000337495.9 0.39396757 Adipose_Subcutaneous|ENST00000430300.5 0.0284318 Adipose_Subcutaneous|ENST00000344157.9 0.68306273 Adipose_Subcutaneous|ENST00000621561.5 0.029445661 Adipose_Subcutaneous|ENST00000614449.4 0.9819926 Adipose_Subcutaneous|ENST00000475938.1 0.056606624 Adipose_Subcutaneous|ENST00000398123.6 0.07401321 Adipose_Subcutaneous|ENST00000698203.1 0.24867997 Adipose_Subcutaneous|ENST00000503886.5 0.018091194 Adipose_Subcutaneous|ENST00000311014.11 0.6776383 Adipose_Subcutaneous|ENST00000380302.8 0.75377303 Adipose_Subcutaneous|ENST00000395616.7 0.13536756 Adipose_Subcutaneous|ENST00000488505.2 0.084116094 Adipose_Subcutaneous|ENST00000514712.5 0.004142593 Adipose_Subcutaneous|ENST00000418517.5 0.324565 Adipose_Subcutaneous|ENST00000573805.1 0.0070463815 Adipose_Subcutaneous|ENST00000579055.5 0.18918617 Adipose_Subcutaneous|ENST00000582036.5 0.4250683 Adipose_Subcutaneous|ENST00000567554.5 0.00756342 Adipose_Subcutaneous|ENST00000542286.5 0.020252155 Adipose_Subcutaneous|ENST00000399298.8 0.82189333 Adipose_Subcutaneous|ENST00000575142.5 0.6568159 Adipose_Subcutaneous|ENST00000547392.5 0.104487255 Adipose_Subcutaneous|ENST00000457424.6 0.21540073 Adipose_Subcutaneous|ENST00000261733.7 0.5717705 Adipose_Subcutaneous|ENST00000610831.4 0.36952078 Adipose_Subcutaneous|ENST00000568968.1 0.008652162 Adipose_Subcutaneous|ENST00000490273.5 0.82171804 Adipose_Subcutaneous|ENST00000206020.8 0.98677444