Home
Category
Visualization
BarBoxComutationDotForestHeatmapHistogramLollipopMafsummaryMaftitvManhattanOncoprintPM-AdiversityPM-comp-corPM-comp-funcPM-comp-taxaPM-DistributionPM-HclusterPM-HeatmapPM-Marker-CorrPM-Marker-RFscorePM-Marker-TestPM-NetworkPM-PcaPM-PcoaPM-plot-taxaPM-rare-curvQ-QSurvivalUpsetVenn
Sequence alignment
BLASTDotmatcherDotpathDottupNeedlePM-BdiversityPM-extract-rnaPM-parallel-metaPM-pipelinePM-profilerPolydotWater
RNA Expression
Bulk RNA-seq Data AnalysisCancer Alternative Splicing AnalysisCCLHunterCIRI-deepCIRI3Cross-disease analysisDisease predictionEditing site annotationEditing site identificationEFDetectorFunGenGene-disease network constructionHELIXNCSelPredRNA-seq AnalysisSingle-cell RNA-seq Data AnalysisSPIRALTIVar diffTIVar predictVisualization of scRNA-seq Data Analysis Results
Variome analysis
BarcodeBLASTBarcodeFindereasyGWASExpPatternGeneFinderHaplotype analysisHapMapHapSnapLeadSNPFinderRice Varieties IdentificationRice Yield EstimationSeqFetchVersionMapWheat Head Estimation
Epigenome analysis
Age PredictorBS-RNAComparative analysis in nucleosomesDMR AnnotationDMR ToolkitEnrichment & AnnotationEnrichment analysis in nucleosome occupancyEWAS Network VisualizationGMQNIDMPLollipop PlotterMRAS
Long non-coding RNA
ClassificationFunctional PredictionID conversionLGClncbook-BLASTLncBot
Virus
COVID-19 genome variation annotationCOVID-19 haplotype analysisDenovo AssemblyEvolutionary treeFastq-to-VariantsGenealogy and Evolutionary AnalysisGenome AnnotationGenome TracingMcANMonkeypox virus genome variation annotationMonkeypox virus genome variation identificationPangolin COVID-19 Lineage AssignerSeqQCVENASVISTA
Single-cell omics
Cell Type ComparatorCell Type PredictorFGOTGOTRegChatSCSESSpaDCSpaMITACOS
Image Processing
Image CroppingImage DenoisingImage FlippingImage PartitioningImage Resizing
Others
Composition analysisCross-model analysisCross-species analysisCross-stages analysisHomolog FinderLUTLSRSMEFEMIAMicrobiome Search EngineMT-trackerncRNA-eQTLPM-parse-mipPM-predict-funcPM-predict-func-contributePM-predict-func-nstiPM-rand-rarePM-select-funcPM-select-taxaPM-split-seqTaxaCal
User Manual
Sequence alignment
BLASTDotmatcherDotpathDottupNeedlePM-BdiversityPM-extract-rnaPM-parallel-metaPM-pipelinePM-profilerPolydotWater
Home Sequence alignment
PM-profiler
File Type
PM-profiler
PM-profiler

Data

Input
Example file

Parameters

0
HWL
HWL + LCA
15
11
12
13
14
15
16
17
18
19
F
TRUE
FALSE
References
 
Instructions

Annotating microbial taxonomy from amplicon sequence data.

PM-profiler is a sequence annotation tool for amplicon metagenomic short reads. It implements an extremely rapid taxonomy annotation algorithm, swiftly searching the database for all the most similar sequences, and annotating the results with the Highest Weight Leaf (HWL) and the Lowest Common Ancestor (LCA). PM-profiler is optimized through parallel computing, enabling it to rapidly process large datasets. We recommend that you read the following before using it.

Contributor(s)
Yuzhu Chen, Jian Li, Yufeng Zhang, Mingqian Zhang, Zheng Sun, Gongchao Jing, Shi Huang, Xiaoquan Su
suxq@qdu.edu.cn
#Runs
0
Open Result
Adipose_Subcutaneous|ENST00000544218.5 0.016763015 Adipose_Subcutaneous|ENST00000223324.3 0.9580719 Adipose_Subcutaneous|ENST00000640579.1 0.32960644 Adipose_Subcutaneous|ENST00000416611.5 0.40903094 Adipose_Subcutaneous|ENST00000536079.5 0.0011006733 Adipose_Subcutaneous|ENST00000453397.5 0.026989384 Adipose_Subcutaneous|ENST00000640697.1 0.08402606 Adipose_Subcutaneous|ENST00000432845.1 0.03113113 Adipose_Subcutaneous|ENST00000697859.1 0.046036582 Adipose_Subcutaneous|ENST00000682920.1 0.06855635 Adipose_Subcutaneous|ENST00000515299.5 0.025964651 Adipose_Subcutaneous|ENST00000635919.1 0.16510151 Adipose_Subcutaneous|ENST00000486524.1 0.06267304 Adipose_Subcutaneous|ENST00000352460.7 0.23311122 Adipose_Subcutaneous|ENST00000431062.5 0.9146842 Adipose_Subcutaneous|ENST00000282957.9 0.95959604 Adipose_Subcutaneous|ENST00000544429.5 0.018525515 Adipose_Subcutaneous|ENST00000356404.8 0.8736707 Adipose_Subcutaneous|ENST00000354291.8 0.008843881 Adipose_Subcutaneous|ENST00000415764.5 0.17589213 Adipose_Subcutaneous|ENST00000398129.5 0.71656567 Adipose_Subcutaneous|ENST00000527527.1 0.00049302826 Adipose_Subcutaneous|ENST00000456296.5 0.043706473 Adipose_Subcutaneous|ENST00000574740.1 0.95732915 Adipose_Subcutaneous|ENST00000449424.5 0.14079884 Adipose_Subcutaneous|ENST00000571023.1 0.07947388 Adipose_Subcutaneous|ENST00000468341.1 0.0048677637 Adipose_Subcutaneous|ENST00000552022.5 0.21221922 Adipose_Subcutaneous|ENST00000639082.1 0.15680069 Adipose_Subcutaneous|ENST00000575784.2 0.023691155 Adipose_Subcutaneous|ENST00000503780.6 0.6352008 Adipose_Subcutaneous|ENST00000456153.5 0.06621771 Adipose_Subcutaneous|ENST00000465718.1 0.0010715557 Adipose_Subcutaneous|ENST00000438490.2 0.9208995 Adipose_Subcutaneous|ENST00000486554.1 0.3316109 Adipose_Subcutaneous|ENST00000639873.1 0.115190856 Adipose_Subcutaneous|ENST00000536718.3 0.76103646 Adipose_Subcutaneous|ENST00000495949.1 0.0768956 Adipose_Subcutaneous|ENST00000549971.5 0.022703744 Adipose_Subcutaneous|ENST00000686058.1 0.409031 Adipose_Subcutaneous|ENST00000372390.8 0.2088625 Adipose_Subcutaneous|ENST00000544738.5 0.00568502 Adipose_Subcutaneous|ENST00000372596.5 0.5071127 Adipose_Subcutaneous|ENST00000569398.5 0.0020403108 Adipose_Subcutaneous|ENST00000547818.5 0.14179587 Adipose_Subcutaneous|ENST00000412732.5 0.27413774 Adipose_Subcutaneous|ENST00000510746.1 0.010018289 Adipose_Subcutaneous|ENST00000398822.7 0.3531744 Adipose_Subcutaneous|ENST00000432134.8 0.07546276 Adipose_Subcutaneous|ENST00000545042.1 0.0068843286 Adipose_Subcutaneous|ENST00000548536.1 0.029213605 Adipose_Subcutaneous|ENST00000543728.1 0.007785795 Adipose_Subcutaneous|ENST00000396791.7 0.5195981 Adipose_Subcutaneous|ENST00000567626.1 0.0017494886 Adipose_Subcutaneous|ENST00000301050.7 0.82458663 Adipose_Subcutaneous|ENST00000698202.1 0.15493695 Adipose_Subcutaneous|ENST00000538744.5 0.009492956 Adipose_Subcutaneous|ENST00000215832.11 0.96410674 Adipose_Subcutaneous|ENST00000238146.9 0.29180774 Adipose_Subcutaneous|ENST00000527103.1 0.00652627 Adipose_Subcutaneous|ENST00000436757.6 0.58521235 Adipose_Subcutaneous|ENST00000416293.7 0.044595253 Adipose_Subcutaneous|ENST00000497691.5 0.54554313 Adipose_Subcutaneous|ENST00000540763.5 0.019000083 Adipose_Subcutaneous|ENST00000294008.4 0.9367466 Adipose_Subcutaneous|ENST00000355665.7 0.1714724 Adipose_Subcutaneous|ENST00000372597.5 0.22155361 Adipose_Subcutaneous|ENST00000488592.1 0.06916462 Adipose_Subcutaneous|ENST00000503053.5 0.00020937959 Adipose_Subcutaneous|ENST00000457600.3 0.9798195 Adipose_Subcutaneous|ENST00000337495.9 0.39396757 Adipose_Subcutaneous|ENST00000430300.5 0.0284318 Adipose_Subcutaneous|ENST00000344157.9 0.68306273 Adipose_Subcutaneous|ENST00000621561.5 0.029445661 Adipose_Subcutaneous|ENST00000614449.4 0.9819926 Adipose_Subcutaneous|ENST00000475938.1 0.056606624 Adipose_Subcutaneous|ENST00000398123.6 0.07401321 Adipose_Subcutaneous|ENST00000698203.1 0.24867997 Adipose_Subcutaneous|ENST00000503886.5 0.018091194 Adipose_Subcutaneous|ENST00000311014.11 0.6776383 Adipose_Subcutaneous|ENST00000380302.8 0.75377303 Adipose_Subcutaneous|ENST00000395616.7 0.13536756 Adipose_Subcutaneous|ENST00000488505.2 0.084116094 Adipose_Subcutaneous|ENST00000514712.5 0.004142593 Adipose_Subcutaneous|ENST00000418517.5 0.324565 Adipose_Subcutaneous|ENST00000573805.1 0.0070463815 Adipose_Subcutaneous|ENST00000579055.5 0.18918617 Adipose_Subcutaneous|ENST00000582036.5 0.4250683 Adipose_Subcutaneous|ENST00000567554.5 0.00756342 Adipose_Subcutaneous|ENST00000542286.5 0.020252155 Adipose_Subcutaneous|ENST00000399298.8 0.82189333 Adipose_Subcutaneous|ENST00000575142.5 0.6568159 Adipose_Subcutaneous|ENST00000547392.5 0.104487255 Adipose_Subcutaneous|ENST00000457424.6 0.21540073 Adipose_Subcutaneous|ENST00000261733.7 0.5717705 Adipose_Subcutaneous|ENST00000610831.4 0.36952078 Adipose_Subcutaneous|ENST00000568968.1 0.008652162 Adipose_Subcutaneous|ENST00000490273.5 0.82171804 Adipose_Subcutaneous|ENST00000206020.8 0.98677444