NGDC Cloud

Data

Input data text:

Upload a file

Example file

Input data text:

Upload a file

Example file

Parameters

Databases

Sequence types

Profiler tool

rRNA correction

Format check

Functional analysis

Taxonomic distance type

Rarefaction depth

nboot

Compute rarefaction

Paired

Cluster number

Edge threshold

References

Instructions

The Parallel-Meta Suite Pipeline automates microbial sequence analysis, taxonomic classification, and functional profiling.

PM-pipeline is a command for fully automated microbial community analysis, including taxonomic profiling, functional prediction, and statistical processing of sequencing data. It supports multiple input types, such as sequencing files, taxonomic results, and OTU tables, and allows users to customize profiling and statistical parameters. Optimized with parallel computing, it efficiently handles large datasets for end-to-end microbial community analysis.

Contributor(s)

Yuzhu Chen, Jian Li, Yufeng Zhang, Mingqian Zhang, Zheng Sun, Gongchao Jing, Shi Huang, Xiaoquan Su

suxq@qdu.edu.cn

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