Difference between revisions of "Test"

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To be curated<br>
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{|class="wikitable" \style="width:90%;text-align:center
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'''Every Gene Has A Story ！'''
 
−
{|class="wikitable" style="width:90%;text-align:center" 
 
 
|-
 
|-
 +
!Number
 
!Gene name
 
!Gene name
 
!RAP ID
 
!RAP ID
−
!Annotated
+
!DOI
−
!Reference Title
+
!Reference TitleLDMAR
−
|-  
+
!Keywords
−
|''OsSUT2''
+
|-
−
|[[Os12g0641400]]
+
|1
−
|LOC_Os12g44380
+
|''GA2ox3''
−
|Wei Siao;Jia-Yi Chen;Hui-Hsin Hsiao;Ping Chung;Shu-Jen Wang Characterization of OsSUT2 Expression and Regulation in Germinating Embryos of Rice Seeds Rice, 2011, 4(2): 39-49
+
|[[Os01g0757200]]
 +
|10.1105/tpc.108.060913
 +
|
 +
*A Novel Class of Gibberellin 2-Oxidases Control Semidwarfism, Tillering, and Root Development in Rice W
 +
|-
 +
|2
 +
|''GA2ox9''
 +
|[[Os02g0630300]]
 +
|10.1105/tpc.108.060913
 +
|
 +
*A Novel Class of Gibberellin 2-Oxidases Control Semidwarfism, Tillering, and Root Development in Rice W
 +
|-
 +
|3
 +
|''GA2ox6''
 +
|[[Os04g0522500]]
 +
|10.1105/tpc.108.060913
 +
|
 +
*A Novel Class of Gibberellin 2-Oxidases Control Semidwarfism, Tillering, and Root Development in Rice W
 +
|-
 +
|4
 +
|''SG1''
 +
|[[Os09g0459200]]
 +
|10.1104/pp.111.187567
 +
|
 +
*Annotated
 +
|-
 +
|5
 +
|''ALS''
 +
|[[Os02g0510200]]
 +
|10.1007/s00299-010-0915-8
 +
|
 +
*Selecting genetic transformants of indica and indica-derived rice cultivars using bispyribac sodium and a mutated ALS gene
 +
|-
 +
|6
 +
|''EL5''
 +
|[[Os02g0559800]]
 +
|10.1111/j.1365-313X.2007.03120.x
 +
|
 +
*SHORT GRAIN1 Decreases Organ Elongation and Brassinosteroid Response in Rice1[W][OA]
 +
|-
 +
|7
 +
|''OASA2''
 +
|[[Os03g0264400]]
 +
|10.1104/pp.111.175778
 +
|
 +
*Application of Gene Targeting to Designed Mutation Breeding of High-Tryptophan Rice1[W][OA]
 +
|-
 +
|8
 +
|''OsGAD2''
 +
|[[Os04g0447800]]
 +
|10.1093/jxb/erm120
 +
|
 +
*C-terminal extension of rice glutamate decarboxylase(OsGAD2) functions as an autoinhibitory domain and overexpression of a truncated mutant results in the accumulation of extremely high levels of GABA in plant cells
 +
|-
 +
|9
 +
|''OsIAA3''
 +
|[[Os12g0601400]]
 +
|10.1111/j.1365-313X.2006.02693.x
 +
|
 +
*Production and characterization of auxin-insensitive rice by overexpression of a mutagenized rice IAA protein
 +
|-
 +
|10
 +
|''IDEF1''
 +
|[[Os08g0101000]]
 +
|10.1111/j.1365-313X.2011.04772.x
 +
|
 +
*Annotated
 +
|-
 +
|11
 +
|''OsPLDα1''
 +
|[[Os01g0172400]]
 +
|10.1111/j.1744-7909.2010.01021.x
 +
|
 +
*Annotated
 +
|-
 +
|12
 +
|''AFT''
 +
|[[Os01g0185300]]
 +
|10.1007/s00425-009-1077-1
 +
|
 +
*Down-regulation of four putative arabinoxylan feruloyl transferase genes from family PF02458 reduces ester-linked ferulate content in rice cell walls
 +
|-
 +
|13
 +
|''OsGAE1''
 +
|[[Os01g0201600]]
 +
|10.1007/s11103-006-9030-1
 +
|
 +
*The rice OsGAE1 is a novel gibberellin-regulated gene and involved in rice growth
 +
|-
 +
|14
 +
|''OsMADS3''
 +
|[[Os01g0201700]]
 +
|10.1023/A:1006051911291
 +
|
 +
*Annotated
 +
|-
 +
|15
 +
|''OsSAMS3''
 +
|[[Os01g0293000]]
 +
|10.1016/j.jplph.2011.05.020
 +
|
 +
*Knockdown of SAMS genes encoding S-adenosyl-l-methionine synthetases causes methylation alterations of DNAs and histones and leads to late flowering in rice
 +
|-
 +
|16
 +
|''OsSAMS2''
 +
|[[Os01g0323600]]
 +
|10.1016/j.jplph.2011.05.020
 +
|
 +
*Knockdown of SAMS genes encoding S-adenosyl-l-methionine synthetases causes methylation alterations of DNAs and histones and leads to late flowering in rice
 +
|-
 +
|17
 +
|''OsACO7''
 +
|[[Os01g0580500]]
 +
|10.1104/pp.110.162412
 +
|  
 +
*Cyanide, a Coproduct of Plant Hormone Ethylene Biosynthesis, Contributes to the Resistance of Rice to Blast Fungus
 +
|-
 +
|18
 +
|''OsrbohA''
 +
|[[Os01g0734466]]
 +
|10.5511/plantbiotechnology.22.127
 +
|
 +
*Function of the rice gp91phox homologs OsrbohA and OsrbohE genes in ROS-dependent plant immune responses
 +
|-
 +
|19
 +
|''Orysa;CycB1;1''
 +
|[[Os01g0805600]]
 +
|10.1007/s00425-009-1051-y
 +
|
 +
*Annotated
 +
|-
 +
|20
 +
|''OsNAC4''
 +
|[[Os01g0816100]]
 +
|10.1038/emboj.2009.39
 +
|
 +
*The transcription factor OsNAC4 is a key positive regulator of plant hypersensitive cell death
 +
|-
 +
|21
 +
|''OsHAP3A''
 +
|[[Os01g0834400]]
 +
|10.1046/j.1365-313X.2003.01897.x
 +
|
 +
*Annotated 
 +
|-
 +
|22
 +
|''HDT702''
 +
|[[Os01g0909100]]
 +
|10.1016/j.bbrc.2009.07.162
 +
|
 +
*Rice histone deacetylase genes display specific expression patterns and developmental functions
 +
|-
 +
|23
 +
|''OsDCL1''
 +
|[[Os01g0909200]]
 +
|10.1104/pp.105.063420
 +
|
 +
*Loss of Function of OsDCL1 Affects MicroRNA Accumulation and Causes Developmental Defects in Rice
 +
|-
 +
|24
 +
|''SDG714''
 +
|[[Os01g0927000]]
 +
|10.1105/tpc.106.048124
 +
|
 +
*SDG714, a Histone H3K9 Methyltransferase, Is Involved in Tos17 DNA Methylation and Transposition in Rice
 +
|-
 +
|25
 +
|''rtS''
 +
|[[Os01g0929600]]
 +
|10.1007/s11103-006-9031-0
 +
|
 +
*Annotated
 +
|-
 +
|26
 +
|''Osg1''
 +
|[[Os01g0947700]]
 +
|10.1007/s00425-010-1301-z
 +
|
 +
*A rice �-1,3-glucanase gene Osg1 is required for callose degradation in pollen development
 +
|-
 +
|27
 +
|''NOA1''
 +
|[[Os02g0104700]]
 +
|10.1371/journal.pone.0020015
 +
|
 +
*Annotated
 +
|-
 +
|28
 +
|''OsNOA1?RIF1''
 +
|[[Os02g0104700]]
 +
|10.1111/j.1469-8137.2010.03264.x
 +
|
 +
*Annotated 
 +
|-
 +
|29
 +
|''Os4CL3''
 +
|[[Os02g0177600]]
 +
|10.1104/pp.111.178301
 +
|
 +
*Functional Characterization of Evolutionarily Divergent 4-Coumarate:Coenzyme A Ligases in Rice
 +
|-
 +
|30
 +
|''HDA703''
 +
|[[Os02g0214900]]
 +
|10.1016/j.bbrc.2009.07.162
 +
|
 +
*Rice histone deacetylase genes display specific expression patterns and developmental functions
 +
|-
 +
|31
 +
|''HDA710''
 +
|[[Os02g0215200]]
 +
|10.1016/j.bbrc.2009.07.162
 +
|
 +
*Rice histone deacetylase genes display specific expression patterns and developmental functions
 +
|-
 +
|32
 +
|''RPBF''
 +
|[[Os02g0252400]]
 +
|10.1111/j.1365-313X.2009.03925.x
 +
|
 +
*Compensation and interaction between RISBZ1 and RPBF during grain filling in rice
 +
|-
 +
|33
 +
|''DCW11''
 +
|[[Os02g0255100]]
 +
|10.1093/pcp/pcn036
 +
|
 +
*DCW11, Down-Regulated Gene 11 in CW-Type Cytoplasmic Male Sterile Rice,Encoding Mitochondrial Protein Phosphatase 2C is Related to Cytoplasmic Male Sterility
 +
|-
 +
|34
 +
|''OsHARP''
 +
|[[Os02g0256200]]
 +
|10.1007/s00726-008-0043-8
 +
|
 +
*Characterization of a histidine- and alanine-rich protein showing interaction with calreticulin in rice
 +
|-
 +
|35
 +
|''OsGMST1''
 +
|[[Os02g0274900]]
 +
|10.1093/jxb/err178
 +
|
 +
*Annotated
 +
|-
 +
|36
 +
|''OsTudor-SN''
 +
|[[Os02g0523500]]
 +
|10.1111/j.1365-313X.2008.03516.x
 +
|
 +
*The cytoplasmic-localized, cytoskeletal-associated RNA binding protein OsTudor-SN: evidence for an essential role in storage protein RNA transport and localization
 +
|-
 +
|37
 +
|''RAR1''
 +
|[[Os02g0535400]]
 +
|10.1105/tpc.107.055517
 +
|
 +
*Annotated
 +
|-
 +
|38
 +
|''GF14e''
 +
|[[Os02g0580300]]
 +
|10.1111/j.1365-313X.2011.04728.x
 +
|
 +
*Annotated
 +
|-
 +
|39
 +
|''OsNAR2.1''
 +
|[[Os02g0595900]]
 +
|10.1111/j.1365-3040.2011.02335.x
 +
|
 +
*Rice OsNAR2.1 interacts with OsNRT2.1, OsNRT2.2 and OsNRT2.3a nitrate transporters to provide uptake over high and low concentration ranges
 +
|-
 +
|40
 +
|''OsCKI1''
 +
|[[Os02g0622100]]
 +
|10.1046/j.1365-313X.2003.01866.x
 +
|
 +
*Annotated
 +
|-
 +
|41
 +
|''Oscry2''
 +
|[[Os02g0625000]]
 +
|10.1093/pcp/pcj064
 +
|
 +
*Involvement of Rice Cryptochromes in De-etiolation Responses and Flowering
 +
|-
 +
|42
 +
|''OsYSL15''
 +
|[[Os02g0650300]]
 +
|10.1074/jbc.M806042200
 +
|
 +
*Annotated
 +
|-
 +
|43
 +
|''SGL1''
 +
|[[Os02g0762600]]
 +
|10.1104/pp.111.187567
 +
|
 +
*SHORT GRAIN1 Decreases Organ Elongation and Brassinosteroid Response in Rice
 +
|-
 +
|44
 +
|''CEBiP''
 +
|[[Os03g0133400]]
 +
|10.1111/j.1365-313X.2010.04328.x
 +
|
 +
*Perception of the chitin oligosaccharides contributes to disease resistance to blast fungus Magnaporthe oryzae in rice
 +
|-
 +
|45
 +
|''OsPAO''
 +
|[[Os03g0146400]]
 +
|10.1016/j.jplph.2011.05.026
 +
|
 +
*Knockdown of OsPAO and OsRCCR1 cause different plant death phenotypes in rice
 +
|-
 +
|46
 +
|''OsPT2''
 +
|[[Os03g0150800]]
 +
|10.1111/j.1365-313X.2008.03726.x
 +
|
 +
*Two rice phosphate transporters, OsPht1;2 and OsPht1;6, have different functions and kinetic properties in uptake and translocation
 +
|-
 +
|47
 +
|''OsSUT1''
 +
|[[Os03g0170900]]
 +
|10.1093/pcp/pce148
 +
|
 +
*Annotated
 +
|-
 +
|48
 +
|''OsBP-73''
 +
|[[Os03g0183100]]
 +
|10.1023/A:1024854101965
 +
|
 +
*OsBP-73, a rice gene, encodes a novel DNA-binding protein with a SAP-like domain and its genetic interference by double-stranded RNA inhibits rice growth
 +
|-
 +
|49
 +
|''OsMDP1''
 +
|[[Os03g0186600]]
 +
|10.1111/j.1365-313X.2006.02804.x
 +
|
 +
*A brassinolide-suppressed rice MADS-box transcription factor, OsMDP1, has a negative regulatory role in BR signaling
 +
|-
 +
|50
 +
|''RINO1''
 +
|[[Os03g0192700]]
 +
|10.1093/pcp/pcp071
 +
|
 +
*Differential Effects of a Transgene to Confer Low Phytic Acid in Caryopses Located at Different Positions in Rice Panicles
 +
|-
 +
|51
 +
|''OsMADS1''
 +
|[[Os03g0215400]]
 +
|10.1111/j.1365-313X.2009.04101.x
 +
|
 +
*Annotated
 +
|-
 +
|53
 +
|''OsApx1''
 +
|[[Os03g0285700]]
 +
|10.1016/j.phytochem.2010.01.003
 +
|
 +
*Annotated
 +
|-
 +
|54
 +
|''APx1''
 +
|[[Os03g0285700]]
 +
|10.1111/j.1365-3040.2011.02366.x
 +
|
 +
*Annotated
 +
|-
 +
|55
 +
|''OsFAD7''
 +
|[[Os03g0290300]]
 +
|10.1093/pcp/pcm107
 +
|
 +
*Disease Resistance against Magnaporthe grisea is Enhanced in Transgenic Rice with Suppression of u-3 Fatty Acid Desaturases
 +
|-
 +
|57
 +
|''RGB1''
 +
|[[Os03g0669100]]
 +
|10.1111/j.1365-313X.2011.04643.x
 +
|
 +
*Suppression of the rice heterotrimeric G protein b-subunit gene, RGB1, causes dwarfism and browning of internodes and lamina joint regions
 +
|-
 +
|58
 +
|''OsPIPK1''
 +
|[[Os03g0701800]]
 +
|10.1023/B:PLAN.0000028796.14336.24
 +
|
 +
*OsPIPK1, a rice phosphatidylinositol monophosphate kinase, regulates rice heading by modifying the expression of floral induction genes
 +
|-
 +
|59
 +
|''ero1''
 +
|[[Os03g0733800]]
 +
|10.1073/pnas.0904429106
 +
|
 +
*ER membrane-localized oxidoreductase Ero1 is required for disulfide bond formation in the rice endosperm
 +
|-
 +
|60
 +
|''OsSPO11-1''
 +
|[[Os03g0752200]]
 +
|10.1007/s00412-010-0284-7
 +
|
 +
*OsSPO11-1 is essential for both homologous chromosome pairing and crossover formation in rice
 +
|-
 +
|61
 +
|''CysR10''
 +
|[[Os03g0766000]]
 +
|10.1093/pcp/pcr053
 +
|
 +
*A Role for the Cysteine-Rich 10 kDa Prolamin in Protein Body I Formation in Rice
 +
|-
 +
|62
 +
|''OsGLO1''
 +
|[[Os03g0786100]]
 +
|10.1093/jxb/erp056
 +
|
 +
*Inducible antisense suppression of glycolate oxidase reveals its strong regulation over photosynthesis in rice
 +
|-
 +
|63
 +
|''OsMet1''
 +
|[[Os03g0798300]]
 +
|10.1111/j.1365-313X.2008.03624.x
 +
|
 +
*Annotation
 +
|-
 +
|64
 +
|''CYP99A3''
 +
|[[Os04g0178400]]
 +
|10.1111/j.1365-313X.2010.04408.x
 +
|
 +
*Annotation
 +
|-
 +
|65
 +
|''CYP99A2''
 +
|[[Os04g0180400]]
 +
|10.1111/j.1365-313X.2010.04408.x
 +
|
 +
*CYP99A3: functional identification of a diterpene oxidase from the momilactone biosynthetic gene cluster in rice
 +
|-
 +
|66
 +
|''Ostil1''
 +
|[[Os04g0460600]]
 +
|10.1111/j.1469-8137.2007.02177.x
 +
|
 +
*Overexpression of a NAC-domain protein promotes shoot Blackwell Publishing Ltd branching in rice
 +
|-
 +
|67
 +
|''OsPBP1''
 +
|[[Os04g0531100]]
 +
|10.1093/mp/ssn035
 +
|
 +
*A Novel C2-Domain Phospholipid-Binding Protein, OsPBP1, Is Required for Pollen Fertility in Rice
 +
|-
 +
|68
 +
|''YAB3''
 +
|[[Os04g0536300]]
 +
|10.1104/pp.107.095737
 +
|
 +
*Annotation
 +
|-
 +
|69
 +
|''OsACS2''
 +
|[[Os04g0578000]]
 +
|10.1104/pp.110.162412
 +
|
 +
*Cyanide, a Coproduct of Plant Hormone Ethylene Biosynthesis, Contributes to the Resistance of Rice to Blast Fungus
 +
|-
 +
|70
 +
|''rca''
 +
|[[Os04g0658300]]
 +
|10.1093/aob/mcl025
 +
|
 +
*Annotation
 +
|-
 +
|71
 +
|''OsRMC''
 +
|[[Os04g0659300]]
 +
|10.1111/j.1365-3040.2007.01663.x
 +
|
 +
*Annotation
 +
|-
 +
|72
 +
|''OsMT2b''
 +
|[[Os05g0111300]]
 +
|10.1104/pp.107.110304
 +
|
 +
*Annotation
 +
|-
 +
|73
 +
|''XB3''
 +
|[[Os05g0112000]]
 +
|10.1105/tpc.106.046730
 +
|
 +
*Annotation
 +
|-
 +
|74
 +
|''STAR2''
 +
|[[Os05g0119000]]
 +
|10.1105/tpc.108.064543
 +
|
 +
*Annotation
 +
|-
 +
|75
 +
|''OsSAMS1''
 +
|[[Os05g0135700]]
 +
|10.1016/j.jplph.2011.05.020
 +
|
 +
*Annotation
 +
|-
 +
|76
 +
|''OsACO5''
 +
|[[Os05g0149400]]
 +
|10.1104/pp.110.162412
 +
|
 +
*Cyanide, a Coproduct of Plant Hormone Ethylene Biosynthesis, Contributes to the Resistance of Rice to Blast Fungus
 +
|-
 +
|77
 +
|''OsBLE3''
 +
|[[Os05g0245300]]
 +
|10.1016/j.phytochem.2006.05.026
 +
|
 +
*OsBLE3, a brassinolide-enhanced gene, is involved in the growth of rice
 +
|-
 +
|78
 +
|''OsMADS4''
 +
|[[Os05g0423400]]
 +
|10.1023/A:1006051911291
 +
|
 +
*Identification of class B and class C floral organ identity genes from rice plants
 +
|-
 +
|79
 +
|''IDEF2''
 +
|[[Os05g0426200]]
 +
|10.1074/jbc.M708732200
 +
|
 +
*A Novel NAC Transcription Factor, IDEF2, That Recognizes the Iron Deficiency-responsive Element 2 Regulates the Genes Involved in Iron Homeostasis in Plants
 +
|-
 +
|81
 +
|''OsHAP3C''
 +
|[[Os05g0573500]]
 +
|10.1046/j.1365-313X.2003.01897.x
 +
|
 +
*Annotated
 +
|-
 +
|82
 +
|''OsRAD21-4''
 +
|[[Os05g0580500]]
 +
|10.1007/s11103-005-4922-z
 +
|
 +
*Annotated
 +
|-
 +
|83
 +
|''OsMAPK6''
 +
|[[Os06g0154500]]
 +
|10.1104/pp.104.057414
 +
|
 +
*A Sphingolipid Elicitor-Inducible Mitogen-Activated Protein Kinase Is Regulated by the Small GTPase OsRac1 and Heterotrimeric G-Protein in Rice
 +
|-
 +
|84
 +
|''RFT1''
 +
|[[Os06g0157500]]
 +
|10.1242/dev.040170
 +
|
 +
*Annotated
 +
|-
 +
|85
 +
|''OsMADS5''
 +
|[[Os06g0162800]]
 +
|10.1111/j.1365-313X.2009.04101.x
 +
|
 +
*Functional conservation and diversification of class E floral homeotic genes in rice (Oryza sativa)
 +
|-
 +
|86
 +
|''SSIIa''
 +
|[[Os06g0229800]]
 +
|10.1139/g11-010
 +
|
 +
*Annotated
 +
|-
 +
|87
 +
|''OsGSR1''
 +
|[[Os06g0266800]]
 +
|10.1111/j.1365-313X.2008.03707.x
 +
|
 +
*OsGSR1 is involved in crosstalk between gibberellins and brassinosteroids in rice
 +
|-
 +
|89
 +
|''HDA702''
 +
|[[Os06g0583400]]
 +
|10.1016/j.bbrc.2009.07.162
 +
|
 +
*Annotation
 +
|-
 +
|90
 +
|''OsPNH1''
 +
|[[Os06g0597400]]
 +
|10.1046/j.1365-313X.2002.01279.x
 +
|
 +
*OsPNH1 regulates leaf development and maintenance of the shoot apical meristem in rice
 +
|-
 +
|91
 +
|''OsPLDα4''
 +
|[[Os06g0604200]]
 +
|10.1104/pp.111.183749
 +
|
 +
*The Chloroplast-Localized Phospholipases D a4 and a5 Regulate Herbivore-Induced Direct and Indirect Defenses in Rice
 +
|-
 +
|92
 +
|''OsPLDα5''
 +
|[[Os06g0604300]]
 +
|10.1104/pp.111.183749
 +
|
 +
*The Chloroplast-Localized Phospholipases D a4 and a5 Regulate Herbivore-Induced Direct and Indirect Defenses in Rice
 +
|-
 +
|93
 +
|''OsLIC''
 +
|[[Os06g0704300]]
 +
|10.1371/journal.pone.0003521
 +
|
 +
*OsLIC, a Novel CCCH-Type Zinc Finger Protein with Transcription Activation, Mediates Rice Architecture via Brassinosteroids Signaling
 +
|-
 +
|94
 +
|''OsEIN2''
 +
|[[Os07g0155600]]
 +
|10.1104/pp.109.152702
 +
|
 +
*Annotated
 +
|-
 +
|95
 +
|''HDA704''
 +
|[[Os07g0164100]]
 +
|10.1016/j.bbrc.2009.07.162
 +
|
 +
*Rice histone deacetylase genes display specific expression patterns and developmental functions
 +
|-
 +
|96
 +
|''RISBZ1''
 +
|[[Os07g0182000]]
 +
|10.1111/j.1365-313X.2009.03925.x
 +
|
 +
*Annotated
 +
|-
 +
|97
 +
|''NDP kinase''
 +
|[[Os07g0492000]]
 +
|10.1104/pp.122.2.447
 +
|
 +
*Annotated 
 +
|-
 +
|98
 +
|''OsDR8''
 +
|[[Os07g0529600]]
 +
|10.1007/s11103-005-4770-x
 +
|
 +
*Annotated
 +
|-
 +
|99
 +
|''OsFOR1''
 +
|[[Os07g0568700]]
 +
|10.1023/B:PLAN.0000006940.89955.f1
 +
|
 +
*Annotated
 +
|-
 +
|100
 +
|''OsBZR1''
 +
|[[Os07g0580500]]
 +
|10.1073/pnas.0706386104
 +
|
 +
*Functions of OsBZR1 and 14-3-3 proteins in brassinosteroid signaling in rice
 +
|-
 +
|101
 +
|''Osppc4''
 +
|[[Os01g0208700]]
 +
|10.1073/pnas.0913127107
 +
|
 +
*Phosphoenolpyruvate carboxylase intrinsically located in the chloroplast of rice plays a crucial role in ammonium assimilation
 +
|-
 +
|102
 +
|''OsPDK1''
 +
|[[Os07g0637300]]
 +
|10.1093/pcp/pci241
 +
|
 +
*Gibberellin Regulates Mitochondrial Pyruvate Dehydrogenase Activity in Rice
 +
|-
 +
|103
 +
|''OsBLE2''
 +
|[[Os07g0650600]]
 +
|10.1023/A:1025001304994
 +
|
 +
*A novel brassinolide-enhanced gene identified by cDNA microarray is involved in the growth of rice
 +
|-
 +
|104
 +
|''aldolase''
 +
|[[Os07g0650600]]
 +
|10.1007/s11103-004-5920-2
 +
|
 +
*Characterization of fructose-bisphosphate aldolase regulated by gibberellin in roots of rice seedling
 +
|-
 +
|105
 +
|''rtGA2.1''
 +
|[[Os07g0687700]]
 +
|10.1111/j.1365-313X.2005.02457.x
 +
|
 +
*Alteration of TGA factor activity in rice results in enhanced tolerance to Xanthomonas oryzae pv. oryzae
 +
|-
 +
|106
 +
|''OsFAD8''
 +
|[[Os07g0693800]]
 +
|10.1093/pcp/pcm107
 +
|
 +
*Annotated
 +
|-
 +
|107
 +
|''OsApx2''
 +
|[[Os07g0694700]]
 +
|10.1016/j.phytochem.2010.01.003
 +
|
 +
*Annotated
 +
|-
 +
|108
 +
|''APx2''
 +
|[[Os07g0694700]]
 +
|10.1111/j.1365-3040.2011.02366.x
 +
|
 +
*Annotated
 +
|-
 +
|109
 +
|''OsDEG10''
 +
|[[Os08g0139000]]
 +
|10.1016/j.bbrc.2009.01.131
 +
|
 +
*Annotated
 +
|-
 +
|110
 +
|''OsDR10''
 +
|[[Os08g0155900]]
 +
|10.1371/journal.pone.0004603
 +
|
 +
*A Rice Gene of De Novo Origin Negatively Regulates Pathogen-Induced Defense Response
 +
|-
 +
|111
 +
|''OsBAK1''
 +
|[[Os08g0174700]]
 +
|10.1111/j.1467-7652.2009.00444.x
 +
|
 +
*Annotated
 +
|-
 +
|112
 +
|''OsGLP8''
 +
|[[Os08g0189200]]
 +
|10.1104/pp.108.128348
 +
|
 +
*A Germin-Like Protein Gene Family Functions as a Complex Quantitative Trait Locus Conferring Broad-Spectrum Disease Resistance in Rice
 +
|-
 +
|113
 +
|''SSIIIa''
 +
|[[Os08g0191433]]
 +
|10.1139/g11-010
 +
|
 +
*Double repression of soluble starch synthase genes SSIIa and SSIIIa in rice (Oryza sativa L.) uncovers interactive effects on the physicochemical properties of starch
 +
|-
 +
|114
 +
|''OsRAD21-3''
 +
|[[Os08g0266700]]
 +
|10.1111/j.1365-313X.2007.03190.x
 +
|
 +
*OsRAD21-3, an orthologue of yeast RAD21, is required for pollen development in Oryza sativa
 +
|-
 +
|115
 +
|''OsCCC1''
 +
|[[Os08g0323700]]
 +
|10.1007/s11103-011-9744-6
 +
|
 +
*Annotated
 +
|-
 +
|116
 +
|''OsrbohE''
 +
|[[Os08g0453733]]
 +
|10.5511/plantbiotechnology.22.127
 +
|
 +
*Function of the rice gp91phox homologs OsrbohA and OsrbohE genes in ROS-dependent plant immune responses
 +
|-
 +
|117
 +
|''OsHI-LOX''
 +
|[[Os08g0508800]]
 +
|10.1111/j.1365-313X.2009.03988.x
 +
|
 +
*Silencing OsHI-LOX makes rice more susceptible to chewing herbivores, but enhances resistance to a phloem feeder
 +
|-
 +
|118
 +
|''OsAPx-R''
 +
|[[Os08g0522400]]
 +
|10.1111/j.1469-8137.2011.03659.x
 +
|
 +
*Ascorbate peroxidase-related (APx-R) is a new hemecontaining protein functionally associated with ascorbate peroxidase but evolutionarily divergent
 +
|-
 +
|119
 +
|''OsMADS7''
 +
|[[Os08g0531700]]
 +
|10.1111/j.1365-313X.2009.04101.x
 +
|
 +
*Annotated
 +
|-
 +
|120
 +
|''Os8N3''
 +
|[[Os08g0535200]]
 +
|10.1073/pnas.0604088103
 +
|
 +
*Annotated
 +
|-
 +
|121
 +
|''OsCERK1''
 +
|[[Os08g0538300]]
 +
|10.1111/j.1365-313X.2010.04324.x
 +
|
 +
*Two LysM receptor molecules, CEBiP and OsCERK1,cooperatively regulate chitin elicitor signaling in rice
 +
|-
 +
|122
 +
|''OsSPY''
 +
|[[Os08g0559300]]
 +
|10.1111/j.1365-313X.2006.02875.x
 +
|
 +
*Annotated
 +
|-
 +
|123
 +
|''OsPT6''
 +
|[[Os08g0564000]]
 +
|10.1111/j.1365-313X.2008.03726.x
 +
|
 +
*Two rice phosphate transporters, OsPht1;2 and OsPht1;6, have different functions and kinetic properties in uptake and translocation
 +
|-
 +
|124
 +
|''OsMADS8''
 +
|[[Os09g0507200]]
 +
|10.1111/j.1365-313X.2009.04101.x
 +
|
 +
*Functional conservation and diversification of class E floral homeotic genes in rice (Oryza sativa)
 +
|-
 +
|125
 +
|''OsSGT1''
 +
|[[Os09g0518200]]
 +
|10.1111/j.1365-313X.2008.03697.x
 +
|
 +
*Functional conservation and diversification of class E floral homeotic genes in rice (Oryza sativa)
 +
|-
 +
|126
 +
|''OsGEN-L''
 +
|[[Os09g0521900]]
 +
|10.1093/pcp/pci090
 +
|
 +
*RNAi-mediated Silencing of OsGEN-L (OsGEN-like), a New Member of the RAD2/XPG Nuclease Family, Causes Male Sterility by Defect of Microspore Development in Rice
 +
|-
 +
|128
 +
|''Ugp1''
 +
|[[Os09g0553200]]
 +
|10.1105/tpc.106.044123
 +
|
 +
*Rice UDP-Glucose Pyrophosphorylase1 Is Essential for Pollen Callose Deposition and Its Cosuppression Results in a New Type of Thermosensitive Genic Male Sterility
 +
|-
 +
|129
 +
|''OsRCCR1''
 +
|[[Os10g0389200]]
 +
|10.1016/j.jplph.2011.05.026
 +
|
 +
*Knockdown of OsPAO and OsRCCR1 cause different plant death phenotypes in rice
 +
|-
 +
|130
 +
|''EBL1''
 +
|[[Os10g0390800]]
 +
|10.1007/s10529-010-0405-7
 +
|
 +
*Phytochrome-regulated EBL1 contributes to ACO1 upregulation in rice
 +
|-
 +
|131
 +
|''OsDCL3b''
 +
|[[Os10g0485600]]
 +
|10.1111/j.1365-313X.2011.04805.x
 +
|
 +
*Roles of DCL4 and DCL3b in rice phased small RNA biogenesis
 
|-
 
|-
−
|''OsSOS1''
+
|132
−
|[[Os12g0641100]]
+
|''OsPLDbeta1''
−
|LOC_Os12g44360
+
|[[Os10g0524400]]
−
|Huan Wang;Meishan Zhang;Rui Guo;Decheng Shi;Bao Liu;Xiuyun Lin;Chunwu Yan Effects of salt stress on ion balance and nitrogen metabolism of old and young leaves in rice (Oryza sativa L.)BMC Plant Biology, 2012, 12: 194
+
|10.1104/pp.108.131979
 +
|  
 +
*Suppression of a Phospholipase D Gene, OsPLDb1,Activates Defense Responses and Increases Disease Resistance in Rice
 
|-
 
|-
−
|''OsCCD1''  
+
|134
−
|[[Os12g0640600]]
+
|''SPK''
−
|LOC_Os12g44310
+
|[[Os10g0539600]]
−
|Andrea Ilg;Qiuju Yu;Patrick Schaub;Peter Beyer;Salim Al-Babili Overexpression of the rice carotenoid cleavage dioxygenase 1 gene in Golden Rice endosperm suggests apocarotenoids as substrates in planta Planta, 2010, 232(3): 691-699
+
|10.1093/pcp/pch122
 +
|  
 +
*A Rice Antisense SPK Transformant that Lacks the Accumulation of Seed Storage Substances Shows no Correlation Between Sucrose Concentration in Phloem Sap and Demand for Carbon Sources in the Sink Organs
 
|-
 
|-
−
|''OsPTR2''  
+
|135
−
|[[Os12g0638200]]
+
|''OsMPK5''
−
|LOC_Os12g44100
+
|[[Os11g0684000]]
−
|Yuge Li;Jie Ouyang;Ya-Yun Wang;Rui Hu;Kuaifei Xia;Jun Duan;Yaqin Wang;Yi-Fang Tsay;Mingyong Zhang  Disruption of the rice nitrate transporter OsNPF2.2 hinders root-to-shoot nitrate transport and vascular development Scientific Reports, 2015, 5: 9635
+
|10.1104/pp.109.152702
 +
|  
 +
*Abscisic Acid-Induced Resistance against the Brown Spot Pathogen Cochliobolus miyabeanus in Rice Involves MAP Kinase-Mediated Repression of Ethylene Signaling
 
|-
 
|-
−
|''OsbZIP89''
+
|136
−
|[[Os12g0634500]]
+
|''OsDMC1''
−
|LOC_Os12g43790
+
|[[Os12g0143800]]
−
|Qian Ji;Liang-sheng Zhang;Yi-fei Wang;Jian Wang  Genome-wide analysis of basic leucine zipper transcription factor families in Arabidopsis thaliana, Oryza sativa and Populus trichocarpa  Journal of Shanghai University (English Edition), 2009, 13(2): 174-182
+
|10.1007/s11103-007-9195-2
 +
|
 +
*OsDMC1 is required for homologous pairing in Oryza sativa
 
|-
 
|-
−
|''Osgr-rbp4''
+
|137
−
|[[Os12g0632000]]
+
|''Ostrxm''
−
|LOC_Os12g43600
+
|[[Os12g0188700]]
−
|Chandan Sahi;Manu Agarwal;Amanjot Singha;Anil Grover  Molecular characterization of a novel isoform of rice (Oryza sativa L.) glycine rich-RNA binding protein and evidence for its involvement in high temperature stress response Plant Science, 2007, 173(2): 144-155
+
|10.1104/pp.108.123547
 +
|  
 +
*Abnormal Chloroplast Development and Growth Inhibition in Rice Thioredoxin m Knock-Down Plants
 
|-
 
|-
−
|''OsRab5a''
+
|139
−
|[[Os12g0631100]]
+
|''OsRBCS2''
−
|LOC_Os12g43550
+
|[[Os12g0274700]]
−
|Liuying Wen;Masako Fukuda;Mariko Sunada;Sonoko Ishino;Yoshizumi Ishino;Thomas W. Okita;Masahiro Ogawa;Takashi Ueda;Toshihiro Kumamaru Guanine nucleotide exchange factor 2 for Rab5 proteins coordinated with GLUP6/GEF regulates the intracellular transport of the proglutelin from the Golgi apparatus to the protein storage vacuole in rice endosperm  Journal of Experimental Botany, 2015, 66(20): 6137-6147
+
|10.1111/j.1365-3040.2011.02434.x
 +
|  
 +
*Effect of individual suppression of RBCS multigene family on Rubisco contents in rice leavespce_2434 546..553
 
|-
 
|-
−
|''TOND1''  
+
|143
−
|[[Os12g0630100]]
+
|''OsTDL1A''
−
|LOC_Os12g43440
+
|[[Os12g0472500]]
−
|Yangjun Zhang;Lubin Tan;Zuofeng Zhu;Lixing Yuan;Daoxin Xie;Chuanqing Sun TOND1 confers tolerance to nitrogen deficiency in rice  The Plant Journal, 2014,
+
|10.1111/j.1365-313X.2008.03426.x
 +
|  
 +
*Annotated
 
|-
 
|-
 +
|144
 
|''OsSpo11-4''
 
|''OsSpo11-4''
 
|[[Os12g0622500]]
 
|[[Os12g0622500]]
−
|LOC_Os12g42760
+
|10.1371/journal.pone.0020327
−
|Yoshinori Shingu;Takeshi Tokai;Yasuo Agawa;Kentaro Toyota;Selina Ahamed;Makiko Kawagishi-Kobayashi;Akira Komatsu;Tsutomu Mikawa;Masa-Toshi Yamamoto;Kyo Wakasa;Takehiko Shibata;Kohji Kusano The double-stranded break-forming activity of plant SPO11s and a novel rice SPO11 revealed by a Drosophila bioassay BMC Microbiology, 2012, 13: 1
+
|  
 +
*Annotated
 +
|-
 +
|145
 +
|''OsDOS''
 +
|[[Os01g0192000]]
 +
|10.1104/pp.106.082941
 +
|
 +
*Annotated
 +
|-
 +
|146
 +
|''OsNPR1''
 +
|[[Os01g0194300]]
 +
|10.1007/s11103-010-9695-3
 +
|
 +
*Annotated
 +
|-
 +
|147
 +
|''OsRac1''
 +
|[[Os01g0229400]]
 +
|10.1073/pnas.98.2.759
 +
|
 +
*Essential role of the small GTPase Rac in disease resistance of rice
 +
|-
 +
|148
 +
|''Rdd1''
 +
|[[Os01g0264000]]
 +
|10.1111/j.1365-3040.2009.01954.x
 +
|
 +
*Circadian clock- and phytochrome-regulated Dof-like gene,Rdd1, is associated with grain size in rice
 +
|-
 +
|149
 +
|''OsLOL2''
 +
|[[Os01g0612700]]
 +
|10.1007/s00438-007-0232-2
 +
|
 +
*The rice OsLOL2 gene encodes a zinc Wnger protein involved in rice growth and disease resistance
 +
|-
 +
|150
 +
|''OsYUCCA1''
 +
|[[Os01g0645400]]
 +
|10.1104/pp.106.091561
 +
|
 +
*Auxin Biosynthesis by the YUCCA Genes in Rice
 +
|-
 +
|151
 +
|''PME1''
 +
|[[Os01g0788400]]
 +
|10.1111/j.1365-313X.2011.04486.x
 +
|
 +
*Methanol is an endogenous elicitor molecule for the synthesis of tryptophan and tryptophan-derived secondary metabolites upon senescence of detached rice leaves
 +
|-
 +
|152
 +
|''OsABI5''
 +
|[[Os01g0859300]]
 +
|10.1007/s11103-008-9298-4
 +
|
 +
*Annotated
 +
|-
 +
|153
 +
|''OsNAC6''
 +
|[[Os01g0884300]]
 +
|10.1111/j.1365-313X.2009.03908.x
 +
|
 +
*Annotated
 +
|-
 +
|154
 +
|''OsIRO2''
 +
|[[Os01g0952800]]
 +
|10.1111/j.1365-313X.2007.03149.x
 +
|
 +
*Annotated
 +
|-
 +
|155
 +
|''BiP1''
 +
|[[Os02g0115900]]
 +
|10.1111/j.1365-313X.2010.04453.x
 +
|
 +
*Annotated
 +
|-
 +
|156
 +
|''OsYSL2''
 +
|[[Os02g0649900]]
 +
|10.1111/j.1365-313X.2010.04158.x
 +
|
 +
*Annotated
 +
|-
 +
|157
 +
|''ARAG1''
 +
|[[Os02g0657000]]
 +
|10.1093/aob/mcp303
 +
|
 +
*Annotated
 +
|-
 +
|158
 +
|''OsPIP1;1''
 +
|[[Os02g0666200]]
 +
|10.1038/cr.2007.34
 +
|
 +
*Annotated
 +
|-
 +
|159
 +
|''OsDHODH1''
 +
|[[Os02g0736400]]
 +
|10.1111/j.1744-7909.2009.00853.x
 +
|
 +
*Annotated
 +
|-
 +
|160
 +
|''OsPIN1''
 +
|[[Os02g0743400]]
 +
|10.1093/pcp/pci183
 +
|
 +
*Annotated
 +
|-
 +
|161
 +
|''OsMADS22''
 +
|[[Os02g0761000]]
 +
|10.1111/j.1365-313X.2008.03406.x
 +
|
 +
*Rice SVP-group MADS-box proteins, OsMADS22 and OsMADS55, are negative regulators of brassinosteroid responses
 +
|-
 +
|162
 +
|''AmyI-1''
 +
|[[Os02g0765600]]
 +
|10.1093/pcp/pci091
 +
|
 +
*Annotated
 +
|-
 +
|163
 +
|''OsPIP1;3''
 +
|[[Os02g0823100]]
 +
|10.1038/cr.2007.34
 +
|
 +
*Annotated
 +
|-
 +
|164
 +
|''OsACDR1''
 +
|[[Os03g0160100]]
 +
|10.1007/s10059-009-0161-5
 +
|
 +
*Annotated
 +
|-
 +
|165
 +
|''OsBRR1''
 +
|[[Os03g0228800]]
 +
|10.1007/s00425-009-0951-1
 +
|
 +
*A putative leucine-rich repeat receptor kinase, OsBRR1, is involved in rice blast resistance
 +
|-
 +
|166
 +
|''OsMAPK5''
 +
|[[Os03g0285800]]
 +
|10.1105/tpc.008714
 +
|
 +
*Annotation
 +
|-
 +
|167
 +
|''OsWRKY31''
 +
|[[Os03g0321700]]
 +
|10.1038/cr.2007.104
 +
|
 +
*Constitutive expression of pathogen-inducible OsWRKY31 enhances disease resistance and affects root growth and auxin response in transgenic rice plants
 +
|-
 +
|168
 +
|''OsDIS1''
 +
|[[Os03g0356414]]
 +
|10.1104/pp.111.180893
 +
|
 +
*The SINA E3 Ligase OsDIS1 Negatively Regulates Drought Response in Rice
 +
|-
 +
|169
 +
|''OsLOX1''
 +
|[[Os03g0700700]]
 +
|10.1007/s11103-007-9278-0
 +
|
 +
*A novel lipoxygenase gene from developing rice seeds confers dual position specificity and responds to wounding and insect attack
 +
|-
 +
|170
 +
|''OsSrt1''
 +
|[[Os04g0271000]]
 +
|10.1104/pp.107.099473
 +
|
 +
*Down-Regulation of a SILENT INFORMATION REGULATOR2-Related Histone Deacetylase Gene, OsSRT1, Induces DNA Fragmentation and Cell Death in Rice
 +
|-
 +
|171
 +
|''RERJ1''
 +
|[[Os04g0301500]]
 +
|10.1016/j.bbrc.2004.10.126
 +
|
 +
*Annotated
 +
|-
 +
|172
 +
|''OsGA2ox6''
 +
|[[Os04g0522500]]
 +
|10.1016/S1673-8527(09)60022-9
 +
|
 +
*Annotated
 +
|-
 +
|173
 +
|''RFL''
 +
|[[Os04g0598300]]
 +
|10.1073/pnas.0709059105
 +
|
 +
*Annotated
 +
|-
 +
|174
 +
|''OsrcaA2''
 +
|[[Os04g0658300]]
 +
|10.1006/bbrc.2001.6269
 +
|
 +
*Annotated
 +
|-
 +
|175
 +
|''OsMTP1''
 +
|[[Os05g0128400]]
 +
|10.1007/s00299-011-1140-9
 +
|
 +
*Annotated
 +
|-
 +
|176
 +
|''OsWRKY45''
 +
|[[Os05g0322900]]
 +
|10.1093/jxb/err144
 +
|
 +
*Annotated
 +
|-
 +
|177
 +
|''OsEXP4''
 +
|[[Os05g0477600]]
 +
|10.1105/tpc.011965
 +
|
 +
*Regulation of Expansin Gene Expression Affects Growth and Development in Transgenic Rice Plants
 +
|-
 +
|178
 +
|''SDG728''
 +
|[[Os05g0490700]]
 +
|10.1093/mp/ssq030
 +
|
 +
*Rice SUVH Histone Methyltransferase Genes Display Specific Functions in Chromatin Modification and Retrotransposon Repression
 +
|-
 +
|179
 +
|''OsRan2''
 +
|[[Os05g0574500]]
 +
|10.1093/jxb/erp341
 +
|
 +
*Annotation
 +
|-
 +
|180
 +
|''OsMADS55''
 +
|[[Os06g0217300]]
 +
|10.1111/j.1365-313X.2008.03406.x
 +
|
 +
*Rice SVP-group MADS-box proteins, OsMADS22 and OsMADS55, are negative regulators of brassinosteroid responses
 +
|-
 +
|181
 +
|''OsCIPK23''
 +
|[[Os07g0150700]]
 +
|10.1016/S1673-8527(08)60073-9
 +
|
 +
*Annotated
 +
|-
 +
|182
 +
|''OsTRXh1''
 +
|[[Os07g0186000]]
 +
|10.1104/pp.111.182808
 +
|
 +
*Annotated
 +
|-
 +
|183
 +
|''TDC''
 +
|[[Os08g0140300]]
 +
|10.1104/pp.109.138552
 +
|
 +
*Annotated
 +
|-
 +
|184
 +
|''OsLSD1''
 +
|[[Os08g0159500]]
 +
|10.1094/MPMI-18-0375
 +
|
 +
*Overexpression of OsRAN2 in rice and Arabidopsis renders transgenic plants hypersensitive to salinity and osmotic stress
 +
|-
 +
|185
 +
|''OsDERF1''
 +
|[[Os08g0454000]]
 +
|10.1371/journal.pone.0025216
 +
|
 +
*Annotated
 +
|-
 +
|186
 +
|''OsGLP1''
 +
|[[Os08g0460000]]
 +
|10.1016/j.bbrc.2010.02.142
 +
|
 +
*Functional role of rice germin-like protein1 in regulation of plant height and disease resistance
 +
|-
 +
|187
 +
|''OsPRP3''
 +
|[[Os10g0148100]]
 +
|10.1007/s11103-009-9557-z
 +
|
 +
*OsPRP3, a flower specific proline-rich protein of rice, determines extracellular matrix structure of floral organs and its overexpression confers cold-tolerance
 +
|-
 +
|188
 +
|''OsPT8''
 +
|[[Os10g0444700]]
 +
|10.1104/pp.111.175240
 +
|
 +
*The Phosphate Transporter Gene OsPht1;8 Is Involved in Phosphate Homeostasis in Rice
 +
|-
 +
|189
 +
|''OsWRKY89''
 +
|[[Os11g0117400]]
 +
|10.1007/s11103-007-9244-x
 +
|
 +
*Annotated
 +
|-
 +
|190
 +
|''OsNAC5''
 +
|[[Os11g0184900]]
 +
|10.1007/s00425-011-1403-2
 +
|
 +
*Annotated
 +
|-
 +
|191
 +
|''OsPCBP''
 +
|[[Os11g0689300]]
 +
|10.1007/s12374-011-9184-5
 +
|
 +
*A Calmodulin-Binding Protein from Rice is Essential to Pollen Development
 +
|-
 +
|192
 +
|''OsrcaA1''
 +
|[[Os11g0707000]]
 +
|10.1006/bbrc.2001.6269
 +
|
 +
*Involvement of a Ca21-Dependent Protein Kinase Component Downstream to the Gibberellin-Binding Phosphoprotein, RuBisCO Activase, in Rice
 +
|-
 +
|193
 +
|''sui1''
 +
|[[Os01g0118300]]
 +
|10.1007/s11103-011-9825-6
 +
|
 +
*Identification and characterization of SHORTENED UPPERMOST INTERNODE 1, a gene negatively regulating uppermost internode elongation in rice
 +
|-
 +
|194
 +
|''Osjag''
 +
|[[Os01g0129200]]
 +
|10.1007/s11103-010-9703-7
 +
|
 +
*Molecular cloning and functional characterization of OsJAG gene based on a complete-deletion mutant in rice (Oryza sativa L.)
 +
|-
 +
|195
 +
|''sl1''
 +
|[[Os01g0129200]]
 +
|10.1111/j.1365-313X.2009.03913.x
 +
|
 +
*STAMENLESS 1, encoding a single C2H2 zinc finger protein, regulates floral organ identity in rice
 +
|-
 +
|197
 +
|''OsABCG31''
 +
|[[Os01g0177900]]
 +
|10.1073/pnas.1108444108
 +
|
 +
*Annotated
 +
|-
 +
|198
 +
|''OsGI''
 +
|[[Os01g0182600]]
 +
|10.1105/tpc.111.083238
 +
|
 +
*Annotated
 +
|-
 +
|199
 +
|''d2''
 +
|[[Os01g0197100]]
 +
|10.1105/tpc.014712
 +
|
 +
*Annotated
 +
|-
 +
|200
 +
|''mads3''
 +
|[[Os01g0201700]]
 +
|10.1105/tpc.110.074369
 +
|
 +
*Annotated
 +
|-
 +
|201
 +
|''OsGSK1''
 +
|[[Os01g0205700]]
 +
|10.1007/s11103-007-9213-4
 +
|
 +
*Annotated
 +
|-
 +
|202
 +
|''nyc1''
 +
|[[Os01g0227100]]
 +
|10.1105/tpc.106.042911
 +
|
 +
*Annotated
 +
|-
 +
|203
 +
|''OSH6''
 +
|[[Os01g0302500]]
 +
|10.1007/s00425-007-0576-1
 +
|
 +
*A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts,in rice
 +
|-
 +
|204
 +
|''phd1''
 +
|[[Os01g0367100]]
 +
|10.1371/journal.pgen.1002196
 +
|
 +
*Annotated
 +
|-
 +
|205
 +
|''dbs1''
 +
|[[Os01g0513900]]
 +
|10.1093/pcp/pci206
 +
|
 +
*The Rice Mutant dwarf bamboo shoot 1: A Leaky Mutant of the NACK-type Kinesin-like Gene Can Initiate Organ Primordia but not Organ Development
 +
|-
 +
|206
 +
|''shl2''
 +
|[[Os01g0527600]]
 +
|10.1073/pnas.0704339104
 +
|
 +
|Finishend
 +
*Annotated
 +
|-
 +
|207
 +
|''osubp6''
 +
|[[Os01g0550100]]
 +
|10.1007/s10059-009-0138-4
 +
|
 +
*Structure and Expression of OsUBP6, an Ubiquitin-Specific Protease 6 Homolog in Rice (Oryza sativa L.)
 +
|-
 +
|208
 +
|''log''
 +
|[[Os01g0588900]]
 +
|10.1038/nature05504
 +
|
 +
*Direct control of shoot meristem activity by a cytokinin-activating enzyme
 +
|-
 +
|209
 +
|''osagpl2''
 +
|[[Os01g0633100]]
 +
|10.1007/s11103-007-9153-z
 +
|
 +
*Annotated
 +
|-
 +
|210
 +
|''snl6''
 +
|[[Os01g0639200]]
 +
|10.1371/journal.pgen.1001123
 +
|
 +
*Annotated
 +
|-
 +
|211
 +
|''Ostpc1''
 +
|[[Os01g0678500]]
 +
|10.1093/pcp/pch082
 +
|
 +
*Annotated
 +
|-
 +
|212
 +
|''nadh-gogat1''
 +
|[[Os01g0682001]]
 +
|10.1007/s00726-010-0531-5
 +
|
 +
*Reverse genetics approach to characterize a function of NADH-glutamate synthase1 in rice plants
 +
|-
 +
|213
 +
|''dgl1''
 +
|[[Os01g0683100]]
 +
|10.1104/pp.105.062968
 +
|
 +
*Analysis of the Rice Mutant dwarf and gladius leaf 1. Aberrant Katanin-Mediated Microtubule Organization Causes Up-Regulation of Gibberellin Biosynthetic Genes Independently of Gibberellin Signaling
 +
|-
 +
|214
 +
|''spl28*''
 +
|[[Os01g0703600]]
 +
|10.1111/j.1469-8137.2009.03047.x
 +
|
 +
*Annotated
 +
|-
 +
|215
 +
|''OsLFL''
 +
|[[Os01g0713600]]
 +
|10.1016/j.jplph.2007.07.010
 +
|
 +
*Overexpression of transcription factor OsLFL1 delays flowering time in Oryza sativa
 +
|-
 +
|216
 +
|''d61''
 +
|[[Os01g0718300]]
 +
|10.1105/tpc.12.9.1591
 +
|
 +
*Annotated
 +
|-
 +
|217
 +
|''d10''
 +
|[[Os01g0746400]]
 +
|10.1111/j.1365-313X.2007.03210.x
 +
|
 +
*Annotated
 +
|-
 +
|218
 +
|''Bc7(t)''
 +
|[[Os01g0750300]]
 +
|10.1016/S1673-8527(07)60115-5
 +
|
 +
*Biochemical and molecular characterization of a rice glutelin allele for the GluA-1 gene
 +
|-
 +
|221
 +
|''gamyb''
 +
|[[Os01g0812000]]
 +
|10.1105/tpc.017327
 +
|
 +
*Annotated
 +
|-
 +
|222
 +
|''lax''
 +
|[[Os01g0831000]]
 +
|10.1073/pnas.1932414100
 +
|
 +
*Annotated
 +
|-
 +
|223
 +
|''oscfbp1''
 +
|[[Os01g0866400]]
 +
|10.1111/j.1365-3040.2008.01890.x
 +
|
 +
*Annotated
 +
|-
 +
|224
 +
|''Osabf1''
 +
|[[Os01g0867300]]
 +
|10.1007/s11103-009-9592-9
 +
|
 +
*Annotated
 +
|-
 +
|225
 +
|''Os-pollux''
 +
|[[Os01g0870100]]
 +
|10.1104/pp.108.131540
 +
|
 +
*Antiquity and Function of CASTOR and POLLUX, the Twin Ion Channel-Encoding Genes Key to the Evolution of Root Symbioses in Plants
 +
|-
 +
|226
 +
|''OsPdk1''
 +
|[[Os01g0872800]]
 +
|10.1093/pcp/pcq167
 +
|
 +
*Pdk1 Kinase Regulates Basal Disease Resistance Through the OsOxi1–OsPti1a Phosphorylation Cascade in Rice
 +
|-
 +
|227
 +
|''Osspr1''
 +
|[[Os01g0898300]]
 +
|10.1111/j.1469-8137.2010.03513.x
 +
|
 +
*Annotated
 +
|-
 +
|228
 +
|''eg1''
 +
|[[Os01g0900400]]
 +
|10.1111/j.1365-313X.2008.03710.x
 +
|
 +
*A putative lipase gene EXTRA GLUME1 regulates both empty-glume fate and spikelet development in rice
 +
|-
 +
|229
 +
|''pla2''
 +
|[[Os01g0907900]]
 +
|10.1105/tpc.105.037622
 +
|
 +
*Annotated
 +
|-
 +
|230
 +
|''lhd2''
 +
|[[Os01g0907900]]
 +
|10.1038/sj.cr.7310034
 +
|
 +
*Annotated
 +
|-
 +
|231
 +
|''C3H12''
 +
|[[Os01g0917400]]
 +
|10.1104/pp.111.191379
 +
|
 +
*A CCCH-Type Zinc Finger Nucleic Acid-Binding Protein Quantitatively Confers Resistance against Rice Bacterial Blight Disease
 +
|-
 +
|232
 +
|''msp1''
 +
|[[Os01g0917500]]
 +
|10.1105/tpc.012401
 +
|
 +
*The MSP1 Gene Is Necessary to Restrict the Number of Cells Entering into Male and Female Sporogenesis and to Initiate Anther Wall Formation in Rice
 +
|-
 +
|233
 +
|''OsFRDL4''
 +
|[[Os01g0919100]]
 +
|10.1111/j.1365-313X.2011.04757.x
 +
|
 +
*An Al-inducible MATE gene is involved in external detoxification of Al in rice
 +
|-
 +
|234
 +
|''OsSSI2''
 +
|[[Os01g0919900]]
 +
|10.1094/MPMI-22-7-0820
 +
|
 +
*Annotation
 +
|-
 +
|235
 +
|''OsMADS51''
 +
|[[Os01g0922800]]
 +
|10.1104/pp.107.103291
 +
|
 +
*Annotated
 +
|-
 +
|236
 +
|''se13''
 +
|[[Os01g0949400]]
 +
|10.1007/s00122-010-1426-2
 +
|
 +
*Complete loss of photoperiodic response in the rice mutant line X61 is caused by deWciency of phytochrome chromophore biosynthesis gene
 +
|-
 +
|237
 +
|''LCD''
 +
|[[Os01g0956700]]
 +
|10.1093/jxb/err300
 +
|
 +
*Low cadmium (LCD), a novel gene related to cadmium tolerance and accumulation in rice
 +
|-
 +
|238
 +
|''cde1(t)''
 +
|[[Os02g0121000]]
 +
|10.1007/s00425-007-0525-z
 +
|
 +
*Identification and fine mapping of a thermo-sensitive chlorophyll deficient mutant in rice (Oryza sativa L.)
 +
|-
 +
|239
 +
|''nrat1''
 +
|[[Os02g0131800]]
 +
|10.1073/pnas.1004949107
 +
|
 +
*Annotated
 +
|-
 +
|240
 +
|''lc2''
 +
|[[Os02g0152500]]
 +
|10.1038/cr.2010.109
 +
|
 +
*Annotated
 +
|-
 +
|241
 +
|''Oscand1''
 +
|[[Os02g0167700]]
 +
|10.1093/mp/ssq068
 +
|
 +
*OsCAND1 Is Required for Crown Root Emergence in Rice
 +
|-
 +
|242
 +
|''osgl1-2''
 +
|[[Os02g0178800]]
 +
|10.1007/s11103-009-9483-0
 +
|
 +
*Annotated
 +
|-
 +
|244
 +
|''b-OsLCY''
 +
|[[Os02g0190600]]
 +
|10.1111/j.1365-313X.2008.03411.x
 +
|
 +
*Mutations of genes in synthesis of the carotenoid precursors of ABA lead to pre-harvest sprouting and photo-oxidation in rice
 +
|-
 +
|245
 +
|''Docs1''
 +
|[[Os02g0236100]]
 +
|10.1111/j.1365-313X.2011.04824.x
 +
|
 +
*A leucine-rich repeat receptor-like kinase gene is involved in the specification of outer cell layers in rice roots
 +
|-
 +
|246
 +
|''ep3''
 +
|[[Os02g0260200]]
 +
|10.1007/s00122-009-1151-x
 +
|
 +
*Annotated
 +
|-
 +
|247
 +
|''lp''
 +
|[[Os02g0260200]]
 +
|10.1111/j.1467-7652.2011.00610.x
 +
|
 +
*Annotated
 +
|-
 +
|248
 +
|''oscps1''
 +
|[[Os02g0278700]]
 +
|10.1104/pp.103.033696
 +
|
 +
*An Overview of Gibberellin Metabolism Enzyme Genes and Their Related Mutants in Rice
 +
|-
 +
|249
 +
|''naat1''
 +
|[[Os02g0306401]]
 +
|10.1104/pp.107.107912
 +
|
 +
*Mutation in Nicotianamine Aminotransferase Stimulated the Fe(II) Acquisition System and Led to Iron Accumulation in Rice
 +
|-
 +
|250
 +
|''api5''
 +
|[[Os02g0313400]]
 +
|10.1105/tpc.110.082636
 +
|
 +
*Annotated
 +
|-
 +
|251
 +
|''cfl1''
 +
|[[Os02g0516400]]
 +
|10.1105/tpc.111.088625
 +
|
 +
*Annotated
 +
|-
 +
|252
 +
|''osgtgamma-1''
 +
|[[Os02g0542400]]
 +
|10.1007/s00438-009-0507-x
 +
|
 +
*Systematic analysis of GT factor family of rice reveals a novel subfamily involved in stress responses
 +
|-
 +
|253
 +
|''Oscyt-inv1''
 +
|[[Os02g0550600]]
 +
|10.1007/s00425-008-0718-0
 +
|
 +
*OsCYT-INV1 for alkaline/neutral invertase is involved in root cell development and reproductivity in rice (Oryza sativa L.)
 +
|-
 +
|254
 +
|''cpt1''
 +
|[[Os02g0568200]]
 +
|10.1105/tpc.104.028357
 +
|
 +
*The Rice COLEOPTILE PHOTOTROPISM1 Gene Encoding an Ortholog of Arabidopsis NPH3 Is Required for Phototropism of Coleoptiles and Lateral Translocation of Auxin 
 +
|-
 +
|255
 +
|''rss1''
 +
|[[Os02g0606700]]
 +
|10.1038/ncomms1279
 +
|
 +
*Annotated
 +
|-
 +
|256
 +
|''OsCOL4''
 +
|[[Os02g0610500]]
 +
|10.1111/j.1365-313X.2010.04226.x
 +
|
 +
*Annotated
 +
|-
 +
|257
 +
|''du3''
 +
|[[Os02g0612300]]
 +
|10.5511/plantbiotechnology.25.483
 +
|
 +
*Du3, a mRNA cap-binding protein gene, regulates amylose content in Japonica rice seeds
 +
|-
 +
|258
 +
|''bc14''
 +
|[[Os02g0614100]]
 +
|10.1073/pnas.1016144108
 +
|
 +
*Golgi nucleotide sugar transporter modulates cell wall biosynthesis and plant growth in rice
 +
|-
 +
|260
 +
|''oul1''
 +
|[[Os02g0674800]]
 +
|10.1104/pp.111.176016
 +
|
 +
*Annotated
 +
|
 +
|-
 +
|261
 +
|''Roc5''
 +
|[[Os02g0674800]]
 +
|10.1104/pp.111.176016
 +
|
 +
*Annotated
 +
|-
 +
|262
 +
|''mfo1''
 +
|[[Os02g0682200]]
 +
|10.1105/tpc.109.068742
 +
|
 +
*Annotated
 +
|-
 +
|263
 +
|''osmads6''
 +
|[[Os02g0682200]]
 +
|10.1111/j.1365-313X.2010.04354.x
 +
|
 +
*Annotated
 +
|-
 +
|265
 +
|''adl1''
 +
|[[Os02g0709400]]
 +
|10.1016/j.ydbio.2009.07.042
 +
|
 +
*Annotated
 +
|-
 +
|266
 +
|''OsGS1;1''
 +
|[[Os02g0735200]]
 +
|10.1111/j.1365-313X.2011.04506.x
 +
|
 +
*Metabolomics data reveal a crucial role of cytosolic glutamine synthetase 1;1 in coordinating metabolic balance in rice
 +
|-
 +
|268
 +
|''bc3''
 +
|[[Os02g0738900]]
 +
|10.1007/s00425-010-1145-6
 +
|
 +
*Annotated
 +
|-
 +
|269
 +
|''dsm1''
 +
|[[Os02g0743500]]
 +
|10.1104/pp.109.149856
 +
|
 +
*Annotated
 +
|-
 +
|270
 +
|''lsi1''
 +
|[[Os02g0745100]]
 +
|10.1038/nature04590
 +
|
 +
*A silicon transporter in rice
 +
|-
 +
|271
 +
|''OsbZIP23''
 +
|[[Os02g0766700]]
 +
|10.1104/pp.108.128199
 +
|
 +
*Annotated
 +
|-
 +
|272
 +
|''pps''
 +
|[[Os02g0771100]]
 +
|10.1105/tpc.111.083436
 +
|
 +
*The COP1 Ortholog PPS Regulates the Juvenile–Adult and Vegetative–Reproductive Phase Changes in Rice
 +
|-
 +
|273
 +
|''Ossgo1''
 +
|[[Os02g0799100]]
 +
|10.1111/j.1365-313X.2011.04615.x
 +
|
 +
*Annotated
 +
|-
 +
|274
 +
|''Ospho1;2''
 +
|[[Os02g0809800]]
 +
|10.1104/pp.109.149872
 +
|
 +
*Characterization of the Rice PHO1 Gene Family Reveals a Key Role for OsPHO1;2 in Phosphate Homeostasis and the Evolution of a Distinct Clade in Dicotyledons
 +
|-
 +
|275
 +
|''osmyoXIB''
 +
|[[Os02g0816900]]
 +
|10.1016/j.ydbio.2007.01.008
 +
|
 +
*ORYZA SATIVA MYOSIN XI B controls pollen development by photoperiod-sensitive protein localizations
 +
|-
 +
|276
 +
|''rtbp1''
 +
|[[Os02g0817800]]
 +
|10.1105/tpc.107.051953
 +
|
 +
*Suppression of RICE TELOMERE BINDING PROTEIN1 Results in Severe and Gradual Developmental Defects Accompanied by Genome Instability in Rice
 +
|-
 +
|277
 +
|''lpa1''
 +
|[[Os02g0819400]]
 +
|10.1007/s00122-008-0818-z
 +
|
 +
*The rice OsLpa1 gene encodes a novel protein involved in phytic acid metabolism
 +
|-
 +
|278
 +
|''dh1''
 +
|[[Os02g0820500]]
 +
|10.1007/s11103-007-9283-3
 +
|
 +
*DH1, a LOB domain-like protein required for glume formation in rice
 +
|-
 +
|279
 +
|''Osa8''
 +
|[[Os03g0100800]]
 +
|10.1093/jxb/ern298
 +
|
 +
*Annotated
 +
|-
 +
|280
 +
|''pair1''
 +
|[[Os03g0106300]]
 +
|10.1105/tpc.020701
 +
|
 +
*The Novel Gene HOMOLOGOUS PAIRING ABERRATION IN RICE MEIOSIS1 of Rice Encodes a Putative Coiled-Coil Protein Required for Homologous Chromosome Pairing in Meiosis
 +
|-
 +
|281
 +
|''lsi2''
 +
|[[Os03g0107300]]
 +
|10.1038/nature05964
 +
|
 +
*An efflux transporter of silicon in rice
 +
|-
 +
|282
 +
|''rim1''
 +
|[[Os03g0119966]]
 +
|10.1111/j.1365-313X.2008.03712.x
 +
|
 +
*Disruption of a novel gene for a NAC-domain protein in rice confers resistance to Rice dwarf virus
 +
|-
 +
|283
 +
|''osmads50''
 +
|[[Os03g0122600]]
 +
|10.1111/j.1365-313X.2004.02082.x
 +
|
 +
*Annotated
 +
|-
 +
|284
 +
|''dsm2''
 +
|[[Os03g0125100]]
 +
|10.1104/pp.110.163741
 +
|
 +
*Annotated
 +
|-
 +
|285
 +
|''OsCYP96B4''
 +
|[[Os03g0140400]]
 +
|10.1371/journal.pone.0028069
 +
|
 +
*Annotated
 +
|
 +
|-
 +
|286
 +
|''XS-lpa2-1''
 +
|[[Os03g0142800]]
 +
|10.1007/s00122-009-1018-1
 +
|
 +
*Annotated
 +
|-
 +
|287
 +
|''arl1''
 +
|[[Os03g0149100]]
 +
|10.1111/j.1365-313X.2005.02434.x
 +
|
 +
*Annotated
 +
|-
 +
|288
 +
|''crl1''
 +
|[[Os03g0149100]]
 +
|10.1105/tpc.105.030981
 +
|
 +
*Annotated
 +
|-
 +
|289
 +
|''OsEDR1''
 +
|[[Os03g0160100]]
 +
|10.1111/j.1365-3040.2010.02219.x
 +
|
 +
*OsEDR1 negatively regulates rice bacterial resistance via activation of ethylene biosynthesispce
 +
|-
 +
|290
 +
|''oscow1''
 +
|[[Os03g0162000]]
 +
|10.1007/s11103-007-9203-6
 +
|
 +
*NARROW LEAF 7 controls leaf shape mediated by auxin in rice
 +
|-
 +
|291
 +
|''nal7''
 +
|[[Os03g0162000]]
 +
|10.1007/s00438-008-0328-3
 +
|
 +
*NARROW LEAF 7 controls leaf shape mediated by auxin in rice
 +
|-
 +
|292
 +
|''dpw''
 +
|[[Os03g0167600]]
 +
|10.1105/tpc.111.087528
 +
|
 +
*Defective Pollen Wall Is Required for Anther and Microspore Development in Rice and Encodes a Fatty Acyl Carrier Protein Reductase
 +
|-
 +
|293
 +
|''cyp704B2''
 +
|[[Os03g0168600]]
 +
|10.1105/tpc.109.070326
 +
|Annotated
 +
|Development
 +
|-
 +
|294
 +
|''oni1''
 +
|[[Os03g0181500]]
 +
|10.1111/j.1365-313X.2011.04530.x
 +
|
 +
*Annotated
 +
|-
 +
|295
 +
|''OsPDS''
 +
|[[Os03g0184000]]
 +
|10.1111/j.1365-313X.2008.03411.x
 +
|
 +
*Mutations of genes in synthesis of the carotenoid precursors of ABA lead to pre-harvest sprouting and photo-oxidation in rice
 +
|-
 +
|296
 +
|''gid2''
 +
|[[Os03g0196500]]
 +
|10.1126/science.1081077
 +
|
 +
*Accumulation of Phosphorylated Repressor for Gibberellin Signaling in an F-box Mutant
 +
|-
 +
|297
 +
|''d88''
 +
|[[Os03g0203200]]
 +
|10.1007/s11103-009-9522-x
 +
|
 +
*Annotated
 +
|-
 +
|298
 +
|''htd2''
 +
|[[Os03g0203200]]
 +
|10.1007/s00425-009-0975-6
 +
|
 +
*Annotated
 +
|-
 +
|299
 +
|''d14''
 +
|[[Os03g0203200]]
 +
|10.1093/pcp/pcp091
 +
|
 +
*Annotated
 +
|-
 +
|300
 +
|''dl''
 +
|[[Os03g0215200]]
 +
|10.1105/tpc.018044
 +
|Annotated
 +
|-
 +
|301
 +
|''lhs1''
 +
|[[Os03g0215400]]
 +
|10.1105/tpc.12.6.871
 +
|
 +
* Annotated
 +
|-
 +
|302
 +
|''OsFRDL1''
 +
|[[Os03g0216700]]
 +
|10.1104/pp.108.128132
 +
|
 +
* OsFRDL1 Is a Citrate Transporter Required for Efficient Translocation of Iron in Rice
 +
|-
 +
|303
 +
|''dsm3''
 +
|[[Os03g0230500]]
 +
|10.1007/s11103-011-9830-9
 +
|
 +
* Annotated
 +
|-
 +
|304
 +
|''Osapc6''
 +
|[[Os03g0236966]]
 +
|10.1007/s10142-009-0155-6
 +
|
 +
* A candidate gene OsAPC6 of anaphase-promoting complex of rice identified through T-DNA insertion
 +
|-
 +
|305
 +
|''rcn1''
 +
|[[Os03g0281900]]
 +
|10.1111/j.1469-8137.2008.02724.x
 +
|
 +
* Annotated
 +
|-
 +
|306
 +
|''mit''
 +
|[[Os03g0296800]]
 +
|10.1038/ncomms1326
 +
|
 +
* The rice mitochondrial iron transporter is essential for plant growth
 +
|-
 +
|307
 +
|''ssd1''
 +
|[[Os03g0302900]]
 +
|10.2183/pjab.86.265
 +
|
 +
* SSD1, which encodes a plant-specific novel protein, controls plant elongation by regulating cell division in rice
 +
|-
 +
|308
 +
|''phyB''
 +
|[[Os03g0309200]]
 +
|10.1105/tpc.105.035899
 +
|
 +
* Annotated
 +
|-
 +
|309
 +
|''oscipk31''
 +
|[[Os03g0319400]]
 +
|10.1007/s10059-010-0084-1
 +
|Annotated
 +
|-
 +
|310
 +
|''v2''
 +
|[[Os03g0320900]]
 +
|10.1111/j.1365-313X.2007.03251.x
 +
|
 +
* The rice nuclear gene, VIRESCENT 2, is essential for chloroplast development and encodes a novel type of guanylate kinase targeted to plastids and mitochondria
 +
|-
 +
|311
 +
|''OschlH''
 +
|[[Os03g0323200]]
 +
|10.1093/pcp/pcg064
 +
|
 +
* Characterization of a Rice Chlorophyll-Deficient Mutant Using the T-DNA Gene-Trap System
 +
|-
 +
|312
 +
|''glu1''
 +
|[[Os03g0329500]]
 +
|10.1007/s11103-005-2972-x
 +
|
 +
* Annotated
 +
|-
 +
|313
 +
|''cwa1/bc1''
 +
|[[Os03g0416200]]
 +
|10.1007/s00425-010-1171-4
 +
|
 +
* Isolation of a novel cell wall architecture mutant of rice with defective Arabidopsis COBL4 ortholog BC1 required for regulated deposition of secondary cell wall components
 +
|-
 +
|314
 +
|''glup4''
 +
|[[Os03g0427300]]
 +
|10.1270/jsbbs.60.556
 +
|
 +
* Characterization of the rice glup4 mutant suggests a role for the small GTPase Rab5 in the biosynthesis of carbon and nitrogen storage reserves in developing endosperm
 +
|-
 +
|315
 +
|''OsAGO7''
 +
|[[Os03g0449200]]
 +
|10.1007/s00425-006-0472-0
 +
|
 +
* Annotated
 +
|-
 +
|316
 +
|''shl4/sho2''
 +
|[[Os03g0449200]]
 +
|10.1073/pnas.0704339104
 +
|
 +
* Annotated
 +
|-
 +
|317
 +
|''chl9''
 +
|[[Os03g0563300]]
 +
|10.1007/s11103-006-9024-z
 +
|
 +
* Rice Chlorina-1 and Chlorina-9 encode ChlD and ChlI subunits of Mg-chelatase, a key enzyme for chlorophyll synthesis and chloroplast development
 +
|-
 +
|318
 +
|''pez1''
 +
|[[Os03g0571900]]
 +
|10.1074/jbc.M111.221168
 +
|
 +
* A Rice phenolic efflux transporter is essential for solubilizing precipitated apoplasmic iron in the plant stele
 +
|-
 +
|321
 +
|''OsIAA11''
 +
|[[Os03g0633500]]
 +
|10.1093/mp/ssr074
 +
|
 +
* A Gain-of-Function Mutation in OsIAA11 Affects Lateral Root Development in Rice
 +
|-
 +
|322
 +
|''Osam1''
 +
|[[Os03g0650400]]
 +
|10.1038/cr.2011.7
 +
|
 +
* OsAM1 is required for leptotene-zygotene transition in rice
 +
|-
 +
|323
 +
|''nol1''
 +
|[[Os03g0654600]]
 +
|10.1111/j.1365-313X.2008.03670.x
 +
|
 +
* Two short-chain dehydrogenase/reductases, NON-YELLOW COLORING 1 and NYC1-LIKE, are required for chlorophyll b and light-harvesting complex II degradation during senescence in rice
 +
|-
 +
|324
 +
|''v1''
 +
|[[Os03g0656900]]
 +
|10.1111/j.1365-313X.2011.04755.x
 +
|
 +
* Annotated
 +
|-
 +
|325
 +
|''crl4''
 +
|[[Os03g0666100]]
 +
|10.3117/plantroot.2.19
 +
|
 +
* CRL4 regulates crown root formation through auxin transport in rice
 +
|-
 +
|327
 +
|''fc1/OsTB1''
 +
|[[Os03g0706500]]
 +
|10.1046/j.1365-313X.2003.01648.x
 +
|
 +
* Annotated
 +
|-
 +
|328
 +
|''slr1''
 +
|[[Os03g0707600]]
 +
|10.1105/tpc.13.5.999
 +
|
 +
* Annotated
 +
|-
 +
|329
 +
|''Slr1-d''
 +
|[[Os03g0707600]]
 +
|10.1007/s00438-008-0406-6
 +
|
 +
* Annotated
 +
|-
 +
|330
 +
|''phyA''
 +
|[[Os03g0719800]]
 +
|10.1105/tpc.105.035899
 +
|
 +
* Distinct and Cooperative Functions of Phytochromes A, B, and C in the Control of Deetiolation and Flowering in Rice
 +
|-
 +
|331
 +
|''OsMIK''
 +
|[[Os03g52760]]
 +
|10.1007/s00122-008-0863-7
 +
|
 +
* Isolation and characterization of a low phytic acid rice mutant reveals a mutation in the rice orthologue of maize MIK
 +
|-
 +
|332
 +
|''phyC''
 +
|[[Os03g0752100]]
 +
|10.1105/tpc.105.035899
 +
|
 +
* Distinct and Cooperative Functions of Phytochromes A, B, and C in the Control of Deetiolation and Flowering in Rice
 +
|-
 +
|333
 +
|''pap2''
 +
|[[Os03g0753100]]
 +
|10.1093/pcp/pcp166
 +
|
 +
* Annotated
 +
|-
 +
|334
 +
|''osmads34''
 +
|[[Os03g0753100]]
 +
|10.1104/pp.110.156711
 +
|
 +
* Annotated
 +
|-
 +
|335
 +
|''pho1''
 +
|[[Os03g0758100]]
 +
|10.1105/tpc.107.054007
 +
|
 +
* Mutation of the Plastidial a-Glucan Phosphorylase Gene in Rice Affects the Synthesis and Structure of Starch in the Endosperm
 +
|-
 +
|336
 +
|''bel''
 +
|[[Os03g0760200]]
 +
|10.1007/s11103-006-0058-z
 +
|
 +
* Annotated
 +
|-
 +
|337
 +
|''DST''
 +
|[[Os03g0786400]]
 +
|10.1101/gad.1812409
 +
|
 +
* Annotated
 +
|-
 +
|338
 +
|''pla3/gp''
 +
|[[Os03g0790600]]
 +
|10.1111/j.1365-313X.2009.03841.x
 +
|
 +
* PLASTOCHRON3/GOLIATH encodes a glutamate carboxypeptidase required for proper development in rice
 +
|-
 +
|339
 +
|''el1''
 +
|[[Os03g0793500]]
 +
|10.1038/emboj.2010.75
 +
|
 +
* Annotated
 +
|-
 +
|340
 +
|''chl1''
 +
|[[Os03g0811100]]
 +
|10.1007/s11103-006-9024-z
 +
|
 +
* Annotated
 +
|-
 +
|341
 +
|''OsIDS1''
 +
|[[Os03g0818800]]
 +
|10.1111/j.1365-313X.2011.04804.x
 +
|
 +
* Two AP2 family genes, SUPERNUMERARY BRACT (SNB) and OsINDETERMINATE SPIKELET 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice
 +
|-
 +
|342
 +
|''Xb15''
 +
|[[Os03g0821300]]
 +
|10.1371/journal.pbio.0060231
 +
|
 +
* Rice XB15, a Protein Phosphatase 2C, Negatively Regulates Cell Death and XA21-Mediated Innate Immunity Chang
 +
|-
 +
|343
 +
|''Os-castor''
 +
|[[Os03g0843600]]
 +
|10.1104/pp.108.131540
 +
|
 +
* Antiquity and Function of CASTOR and POLLUX, the Twin Ion Channel-Encoding Genes Key to the Evolution of Root Symbioses in Plants
 +
|-
 +
|345
 +
|''etr2''
 +
|[[Os04g0169100]]
 +
|10.1105/tpc.108.065391
 +
|
 +
* The Ethylene Receptor ETR2 Delays Floral Transition and Affects Starch Accumulation in Rice
 +
|-
 +
|346
 +
|''OsYSL6''
 +
|[[Os04g0390500]]
 +
|10.1104/pp.111.186031
 +
|* OsYSL6 Is Involved in the Detoxification of Excess Manganese in Rice1[W][OA]
 +
|-
 +
|347
 +
|''lax2''
 +
|[[Os04g0396500]]
 +
|10.1105/tpc.111.088765
 +
|
 +
* LAX PANICLE2 of rice encodes a novel nuclear protein and regulates the formation of axillary meristems
 +
|-
 +
|348
 +
|''ACL1''
 +
|[[Os04g0415000]]
 +
|10.1093/mp/ssq022
 +
|
 +
* Annotated
 +
|-
 +
|349
 +
|''zep1''
 +
|[[Os04g0452500]]
 +
|10.1105/tpc.109.070789
 +
|
 +
* Annotated
 +
|-
 +
|350
 +
|''tdd1''
 +
|[[Os04g0463500]]
 +
|10.1111/j.1365-313X.2009.03952.x
 +
|
 +
* A rice tryptophan deficient dwarf mutant, tdd1, contains a reduced level of indole acetic acid and develops abnormal flowers and organless embryos
 +
|-
 +
|351
 +
|''d11''
 +
|[[Os04g0469800]]
 +
|10.1105/tpc.104.024950
 +
|
 +
* Annotated
 +
|-
 +
|352
 +
|''OsGLU3''
 +
|[[Os04g0497200]]
 +
|10.1093/mp/ssr084
 +
|
 +
* OsGLU3, a putative membrane-bound endo-1,4-beta-glucanase, is required for root cell elongation and division in rice (Oryza sativa L.)
 +
|-
 +
|353
 +
|''OsDCL4''
 +
|[[Os04g0509300]]
 +
|10.1105/tpc.107.052209
 +
|
 +
* Oryza sativa Dicer-like4 Reveals a Key Role for Small Interfering RNA Silencing in Plant Development
 +
|-
 +
|355
 +
|''TOB1''
 +
|[[Os04g0536300]]
 +
|10.1105/tpc.111.094797
 +
|
 +
* The YABBY Gene TONGARI-BOUSHI1 Is Involved in Lateral Organ Development and Maintenance of Meristem Organization in the Rice Spikelet
 +
|-
 +
|356
 +
|''Osvpe1''
 +
|[[Os04g0537900]]
 +
|10.1111/j.1365-313X.2009.03801.x
 +
|
 +
* The vacuolar processing enzyme OsVPE1 is required for efficient glutelin processing in rice
 +
|-
 +
|357
 +
|''d17''
 +
|[[Os04g0550600]]
 +
|10.1038/nature07272
 +
|
 +
* Inhibition of shoot branching by new terpenoid plant hormones
 +
|-
 +
|359
 +
|''OsCPK12''
 +
|[[Os04g0560600]]
 +
|10.1111/j.1365-313X.2011.04766.x
 +
|
 +
* Annotated
 +
|-
 +
|360
 +
|''glr3.1''
 +
|[[Os04g0585200]]
 +
|10.1105/tpc.105.037713
 +
|
 +
* Annotated
 +
|-
 +
|361
 +
|''apo2''
 +
|[[Os04g0598300]]
 +
|10.1111/j.1365-313X.2011.04781.x
 +
|
 +
* ABERRANT PANICLE ORGANIZATION 2/RFL, the rice ortholog of Arabidopsis LEAFY, suppresses the transition from inflorescence meristem to floral meristem through interaction with APO1
 +
|-
 +
|362
 +
|''rlin1''
 +
|[[Os04g0610800]]
 +
|10.1016/j.jcg.2010.12.001
 +
|
 +
* RLIN1, encoding a putative coproporphyrinogen III oxidase, is involved in lesion initiation in rice
 +
|-
 +
|363
 +
|''osks1''
 +
|[[Os04g0611800]]
 +
|10.1104/pp.103.033696
 +
|
 +
* An Overview of Gibberellin Metabolism Enzyme Genes and Their Related Mutants in Rice
 +
|-
 +
|364
 +
|''fc1''
 +
|[[Os04g0612700]]
 +
|10.1007/s11103-008-9448-8
 +
|
 +
* FLEXIBLE CULM 1 encoding a cinnamyl-alcohol dehydrogenase controls culm mechanical strength in rice
 +
|-
 +
|366
 +
|''ili1''
 +
|[[Os04g0641700]]
 +
|10.1105/tpc.109.070441
 +
|
 +
* Antagonistic HLH/bHLH Transcription Factors Mediate Brassinosteroid Regulation of Cell Elongation and Plant Development in Rice and Arabidopsis
 +
|-
 +
|367
 +
|''flo2''
 +
|[[Os04g0645100]]
 +
|10.1105/tpc.109.070821
 +
|
 +
* Annotation
 +
|-
 +
|368
 +
|''OsCP1''
 +
|[[Os04g0670500]]
 +
|10.1023/B:PLAN.0000040904.15329.29
 +
|
 +
* Isolation and characterization of a rice cysteine protease gene, OsCP1, using T-DNA gene-trap system
 +
|-
 +
|369
 +
|''OsARF12''
 +
|[[Os04g0671900]]
 +
|10.1111/j.1469-8137.2011.03910.x
 +
|
 +
* Annotation
 +
|-
 +
|370
 +
|''OsMKP1''
 +
|[[Os05g0115800]]
 +
|10.1093/pcp/pcm007
 +
|
 +
* A Calmodulin-Binding Mitogen-Activated Protein Kinase Phosphatase is Induced by Wounding and Regulates the Activities of Stress-Related Mitogen-Activated Protein Kinases in Rice
 +
|-
 +
|371
 +
|''rsr1''
 +
|[[Os05g0121600]]
 +
|10.1104/pp.110.159517
 +
|
 +
* Coexpression Analysis Identifies Rice Starch Regulator1, a Rice AP2/EREBP Family Transcription Factor, as a Novel Rice Starch Biosynthesis Regulator1
 +
|-
 +
|372
 +
|''siz1''
 +
|[[Os05g0125000]]
 +
|10.1111/j.1469-8137.2010.03538.x
 +
|
 +
* Annotation
 +
|-
 +
|373
 +
|''srs3''
 +
|[[Os05g0154700]]
 +
|10.1093/pcp/pcq092
 +
|
 +
* Annotation
 +
|-
 +
|374
 +
|''bc10''
 +
|[[Os05g0170000]]
 +
|10.1111/j.1365-313X.2008.03703.x
 +
|
 +
* BC10, a DUF266-containing and Golgi-located type II membrane protein, is required for cell-wall biosynthesis in rice (Oryza sativa L.)
 +
|-
 +
|375
 +
|''mads58''
 +
|[[Os05g0203800]]
 +
|10.1105/tpc.111.087262
 +
|
 +
* ??Rice MADS6 Interacts with the Floral Homeotic Genes SUPERWOMAN1, MADS3, MADS58, MADS13, and DROOPING LEAF in Specifying Floral Organ Identities and Meristem Fate
 +
|-
 +
|376
 +
|''d1''
 +
|[[Os05g0333200]]
 +
|10.1073/pnas.96.18.10284
 +
|
 +
* Annotation
 +
|-
 +
|377
 +
|''ygl1''
 +
|[[Os05g0349700]]
 +
|10.1104/pp.107.100321
 +
|
 +
* Annotation
 +
|-
 +
|378
 +
|''OsImpβ1''
 +
|[[Os05g0353400]]
 +
|10.1007/s10059-011-2321-7
 +
|
 +
* Rice Importin β1 Gene Affects Pollen Tube Elongation
 +
|-
 +
|379
 +
|''osbc1l4''
 +
|[[Os05g0386800]]
 +
|10.1007/s11103-009-9537-3
 +
|
 +
* Molecular characterization, expression pattern, and function analysis of the OsBC1L family in rice
 +
|-
 +
|380
 +
|''flo4''
 +
|[[Os05g0405000]]
 +
|10.1111/j.1365-313X.2005.02423.x
 +
|
 +
* White-core endosperm floury endosperm-4 in rice is generated by knockout mutations in the C4-type pyruvate orthophosphate dikinase gene (OsPPDKB)
 +
|-
 +
|382
 +
|''gid1''
 +
|[[Os05g0407500]]
 +
|10.1038/nature04028
 +
|
 +
* Annotation
 +
|-
 +
|383
 +
|''DNG701''
 +
|[[Os05g0446000]]
 +
|10.1073/pnas.1112704108
 +
|
 +
* A 5-methylcytosine DNA glycosylase/lyase demethylates the retrotransposon Tos17 and promotes its transposition in rice
 +
|-
 +
|384
 +
|''bgl''
 +
|[[Os05g0454200]]
 +
|10.1007/s11103-011-9839-0
 +
|
 +
* The rice bright green leaf (bgl) locus encodes OsRopGEF10, which activates the development of small cuticular papillae on leaf surfaces
 +
|-
 +
|385
 +
|''oszip5''
 +
|[[Os05g0472700]]
 +
|10.1007/s11103-010-9637-0
 +
|
 +
* OsZIP5 is a plasma membrane zinc transporter in rice
 +
|-
 +
|386
 +
|''eui1''
 +
|[[Os05g0482400]]
 +
|10.1093/pcp/pci233
 +
|
 +
* Annotation
 +
|-
 +
|389
 +
|''spl7''
 +
|[[Os05g0530400]]
 +
|10.1073/pnas.112209199
 +
|
 +
* Annotation
 +
|-
 +
|390
 +
|''snrk1a''
 +
|[[Os05g0530500]]
 +
|10.1105/tpc.105.037887
 +
|
 +
* The SnRK1A Protein Kinase Plays a Key Role in Sugar Signaling during Germination and Seedling Growth of Rice
 +
|-
 +
|391
 +
|''ltn1''
 +
|[[Os05g0557700]]
 +
|10.1104/pp.110.170209
 +
|
 +
*Annotated
 +
|-
 +
|392
 +
|''nl1''
 +
|[[Os05g0578900]]
 +
|10.1038/cr.2009.36
 +
|
 +
* NECK LEAF 1, a GATA type transcription factor, modulates organogenesis by regulating the expression of multiple regulatory genes during reproductive development in rice
 +
|-
 +
|393
 +
|''Osrec8''
 +
|[[Os05g0580500]]
 +
|10.1104/pp.111.177428
 +
|
 +
* Annotated
 +
|-
 +
|394
 +
|''osjar1''
 +
|[[Os05g0586200]]
 +
|10.1111/j.1365-3040.2008.01790.x
 +
|
 +
* Annotated
 +
|-
 +
|395
 +
|''Osexpa17''
 +
|[[Os06g0108600]]
 +
|10.1111/j.1365-313X.2011.04533.x
 +
|
 +
* Root hair-specific expansins modulate root hair elongation in rice
 +
|-
 +
|398
 +
|''zn''
 +
|[[Os06g0116400]]
 +
|10.1111/j.1365-313X.2010.04183.x
 +
|
 +
* ZEBRA-NECROSIS, a thylakoid-bound protein, is critical for the photoprotection of developing chloroplasts during early leaf development
 +
|-
 +
|399
 +
|''osbbi1''
 +
|[[Os06g0125800]]
 +
|10.1038/cr.2011.4
 +
|
 +
* Annotated
 +
|-
 +
|400
 +
|''d62/dlt''
 +
|[[Os06g0127800]]
 +
|10.1007/s00425-010-1263-1
 +
|
 +
* Annotated
 +
|-
 +
|402
 +
|''sik1''
 +
|[[Os06g0130100]]
 +
|10.1111/j.1365-313X.2010.04146.x
 +
|
 +
* Annotated
 +
|-
 +
|403
 +
|''dp1''
 +
|[[Os06g0136900]]
 +
|10.1016/j.ydbio.2011.08.023
 +
|
 +
* An AT-hook gene is required for palea formation and floral organ number control in rice
 +
|-
 +
|404
 +
|''d3''
 +
|[[Os06g0154200]]
 +
|10.1093/pcp/pci022
 +
|
 +
* Suppression of Tiller Bud Activity in Tillering Dwarf Mutants of Rice
 +
|-
 +
|405
 +
|''OsSSI''
 +
|[[Os06g0160700]]
 +
|10.1104/pp.105.071845
 +
|
 +
* Annotated
 +
|-
 +
|406
 +
|''v3''
 +
|[[Os06g0168600]]
 +
|10.1104/pp.109.136648
 +
|
 +
* Rice Virescent3 and Stripe1 Encoding the Large and Small Subunits of Ribonucleotide Reductase Are Required for Chloroplast Biogenesis during Early Leaf Development
 +
|-
 +
|407
 +
|''aid1''
 +
|[[Os06g0181300]]
 +
|10.1104/pp.104.041459
 +
|
 +
* The ANTHER INDEHISCENCE1 Gene Encoding a Single MYB Domain Protein Is Involved in Anther Development in Rice
 +
|-
 +
|408
 +
|''abl1''
 +
|[[Os06g0211200]]
 +
|10.1104/pp.111.173427
 +
|
 +
* Annotated
 +
|-
 +
|409
 +
|''Osabf2''
 +
|[[Os06g0211200]]
 +
|10.1016/j.jplph.2010.05.008
 +
|
 +
* Annotated
 +
|-
 +
|410
 +
|''lsi6''
 +
|[[Os06g0228200]]
 +
|10.1105/tpc.108.059311
 +
|
 +
* A Transporter Regulating Silicon Distribution in Rice Shoots
 +
|-
 +
|411
 +
|''st1''
 +
|[[Os06g0257450]]
 +
|10.1104/pp.109.136648
 +
|
 +
* Rice Virescent3 and Stripe1 Encoding the Large and Small Subunits of Ribonucleotide Reductase Are Required for Chloroplast Biogenesis during Early Leaf Development
 +
|-
 +
|412
 +
|''nyc3''
 +
|[[Os06g0354700]]
 +
|10.1111/j.1365-313X.2009.03919.x
 +
|
 +
* Defect in non-yellow coloring 3, an a/b hydrolase-fold family protein, causes a stay-green phenotype during leaf senescence in rice
 +
|-
 +
|413
 +
|''d35''
 +
|[[Os06g0569500]]
 +
|10.1023/B:PLAN.0000038261.21060.47
 +
|
 +
* Annotated
 +
|-
 +
|414
 +
|''OsIAA23''
 +
|[[Os06g0597000]]
 +
|10.1111/j.1365-313X.2011.04698.x
 +
|
 +
* Annotated
 +
|-
 +
|415
 +
|''se5''
 +
|[[Os06g0603000]]
 +
|10.1046/j.1365-313X.2000.00753.x
 +
|
 +
* Annotated
 +
|-
 +
|416
 +
|''moc1''
 +
|[[Os06g0610350]]
 +
|10.1038/nature01518
 +
|
 +
* Annotated
 +
|-
 +
|417
 +
|''spp''
 +
|[[Os06g0625400]]
 +
|10.1093/pcp/pcq012
 +
|
 +
* A Rice Stromal Processing Peptidase Regulates Chloroplast and Root Development
 +
|-
 +
|418
 +
|''apo1''
 +
|[[Os06g0665400]]
 +
|10.1111/j.1365-313X.2007.03200.x
 +
|
 +
* Rice ABERRANT PANICLE ORGANIZATION 1, encoding an F-box protein, regulates meristem fate
 +
|-
 +
|419
 +
|''oshma9''
 +
|[[Os06g0665800]]
 +
|10.1104/pp.107.102236
 +
|
 +
* Annotated
 +
|-
 +
|420
 +
|''dep3''
 +
|[[Os06g0677000]]
 +
|10.1007/s00122-011-1543-6
 +
|
 +
* Fine mapping and candidate gene analysis of dense and erect panicle 3, DEP3, which confers high grain yield in rice (Oryza sativa L.)
 +
|-
 +
|421
 +
|''star1''
 +
|[[Os06g0695800]]
 +
|10.1105/tpc.108.064543
 +
|
 +
* Annotated
 +
|-
 +
|422
 +
|''OsHMA2''
 +
|[[Os06g0700700]]
 +
|10.1093/pcp/pcr166
 +
|
 +
* Annotated
 +
|-
 +
|423
 +
|''oshkt2;1''
 +
|[[Os06g0701700]]
 +
|10.1038/sj.emboj.7601732
 +
|
 +
* Annotated
 +
|-
 +
|424
 +
|''spw1''
 +
|[[Os06g0712700]]
 +
|10.1242/dev.00294
 +
|
 +
* Annotated
 +
|-
 +
|425
 +
|''fon1''
 +
|[[Os06g0717200]]
 +
|10.1242/dev.01441
 +
|
 +
* The gene FLORAL ORGAN NUMBER1 regulates floral meristem size in rice and encodes a leucine-rich repeat receptor kinase orthologous to Arabidopsis CLAVATA1
 +
|-
 +
|426
 +
|''ila1''
 +
|[[Os06g0724900]]
 +
|10.1105/tpc.111.093419
 +
|
 +
* Annotated
 +
|-
 +
|427
 +
|''GA2ox5''
 +
|[[Os07g0103500]]
 +
|10.1105/tpc.108.060913
 +
|
 +
* A Novel Class of Gibberellin 2-Oxidases Control Semidwarfism, Tillering, and Root Development in Rice
 +
|-
 +
|428
 +
|''crl5''
 +
|[[Os07g0124700]]
 +
|10.1111/j.1365-313X.2011.04610.x
 +
|
 +
|* Finished
 +
|-
 +
|429
 +
|''g1''
 +
|[[Os07g0139300]]
 +
|10.1073/pnas.0907896106
 +
|
 +
* The homeotic gene long sterile lemma (G1) specifies sterile lemma identity in the rice spikelet
 +
|-
 +
|430
 +
|''waf1''
 +
|[[Os07g0164000]]
 +
|10.1104/pp.110.160234
 +
|
 +
* Annotated
 +
|-
 +
|431
 +
|''osku70''
 +
|[[Os07g0184900]]
 +
|10.1104/pp.109.150391
 +
|
 +
* OsKu70 Is Associated with Developmental Growth and Genome Stability in Rice
 +
|-
 +
|432
 +
|''OsPHF1''
 +
|[[Os07g0187700]]
 +
|10.1104/pp.111.181669
 +
|
 +
* OsPHF1 Regulates the Plasma Membrane Localization of Low- and High-Affinity Inorganic Phosphate Transporters and Determines Inorganic Phosphate Uptake and Translocation in Rice
 +
|-
 +
|433
 +
|''STR2''
 +
|[[Os07g0191600]]
 +
|10.1111/j.1365-313X.2011.04842.x
 +
|
 +
* The half-size ABC transporters STR1 and STR2 are indispensable for mycorrhizal arbuscule formation in rice
 +
|-
 +
|434
 +
|''OsZDS''
 +
|[[Os07g0204900]]
 +
|10.1111/j.1365-313X.2008.03411.x
 +
|
 +
* Mutations of genes in synthesis of the carotenoid precursors of ABA lead to pre-harvest sprouting and photo-oxidation in rice
 +
|-
 +
|435
 +
|''sh-h''
 +
|[[Os07g0207700]]
 +
|10.1111/j.1365-313X.2009.04039.x
 +
|
 +
* Inactivation of the CTD phosphatase-like gene OsCPL1 enhances the development of the abscission layer and seed shattering in rice
 +
|-
 +
|436
 +
|''OsZIP8''
 +
|[[Os07g0232800]]
 +
|10.1007/s10059-010-0069-0
 +
|
 +
* Zinc Deficiency-Inducible OsZIP8 Encodes a Plasma Membrane-Localized Zinc Transporter in Rice
 +
|-
 +
|437
 +
|''snb''
 +
|[[Os07g0235800]]
 +
|10.1111/j.1365-313X.2006.02941.x
 +
|
 +
* The rice heterochronic gene SUPERNUMERARY BRACT regulates the transition from spikelet meristem to floral meristem
 +
|-
 +
|438
 +
|''oscbt''
 +
|[[Os07g0490200]]
 +
|10.1007/s10059-009-0081-4
 +
|
 +
* The Calmodulin-Binding Transcription Factor OsCBT Suppresses Defense Responses to Pathogens in Rice
 +
|-
 +
|439
 +
|''oswrky78''
 +
|[[Os07g0583700]]
 +
|10.1007/s00425-011-1423-y
 +
|
 +
* The WRKY transcription factor OsWRKY78 regulates stem elongation and seed development in rice
 +
|-
 +
|440
 +
|''bui1''
 +
|[[Os07g0596300]]
 +
|10.1105/tpc.110.081802
 +
|
 +
* Annotated
 +
|-
 +
|441
 +
|''dep2''
 +
|[[Os07g0616000]]
 +
|10.1038/cr.2010.69
 +
|
 +
* Annotated
 +
|-
 +
|442
 +
|''srs1''
 +
|[[Os07g0616000]]
 +
|10.1266/ggs.85.327
 +
|
 +
* Annotated
 +
|-
 +
|445
 +
|''rth1''
 +
|[[Os07g0682800]]
 +
|10.1270/jsbbs.59.13
 +
|
 +
* Annotated
 +
|-
 +
|446
 +
|''wox11''
 +
|[[Os07g0684900]]
 +
|10.1105/tpc.108.061655
 +
|
 +
* The WUSCHEL-Related Homeobox Gene WOX11 Is Required to Activate Shoot-Borne Crown Root Development in Rice
 +
|-
 +
|447
 +
|''OsNAS3''
 +
|[[Os07g0689600]]
 +
|10.1073/pnas.0910950106
 +
|
 +
* Iron fortification of rice seeds through activation of the nicotianamine synthase gene
 +
|-
 +
|448
 +
|''ehd3''
 +
|[[Os08g0105000]]
 +
|10.1111/j.1365-313X.2011.04517.x
 +
|
 +
* Annotated
 +
|-
 +
|449
 +
|''pss1''
 +
|[[Os08g0117000]]
 +
|10.1105/tpc.109.073692
 +
|
 +
* Annotated
 +
|-
 +
|450
 +
|''cyp703a3''
 +
|[[Os08g0131100]]
 +
|10.1105/tpc.108.062935
 +
|
 +
* Annotated
 +
|-
 +
|451
 +
|''crr6''
 +
|[[Os08g0167500]]
 +
|10.1111/j.1365-313X.2011.04747.x
 +
|
 +
* Annotated
 +
|-
 +
|453
 +
|''ss3a''
 +
|[[Os08g0191433]]
 +
|10.1093/jxb/err125
 +
|
 +
* Annotated
 +
|-
 +
|454
 +
|''osagps2''
 +
|[[Os08g0345800]]
 +
|10.1007/s11103-007-9153-z
 +
|
 +
* Annotated
 +
|-
 +
|455
 +
|''GF14c''
 +
|[[Os08g0430500]]
 +
|10.1093/pcp/pcp012
 +
|
 +
* The 14-3-3 Protein GF14c Acts as a Negative Regulator of Flowering in Rice by Interacting with the Florigen Hd3a
 +
|-
 +
|456
 +
|''coe1''
 +
|[[Os08g0442700]]
 +
|10.1111/j.1365-313X.2010.04250.x
 +
|
 +
* COE1, an LRR–RLK responsible for commissural vein pattern formation in rice
 +
|-
 +
|457
 +
|''bc12''
 +
|[[Os09g0114500]]
 +
|10.1111/j.1365-313X.2010.04238.x
 +
|
 +
* Annotated
 +
|-
 +
|458
 +
|''gdd1''
 +
|[[Os09g0114500]]
 +
|10.1105/tpc.110.081901
 +
|
 +
* Annotated
 +
|-
 +
|459
 +
|''sll1''
 +
|[[Os09g0395300]]
 +
|10.1105/tpc.108.061457
 +
|
 +
* Annotated
 +
|-
 +
|460
 +
|''rl9''
 +
|[[Os09g0395300]]
 +
|10.1007/s11103-008-9365-x
 +
|
 +
* Annotated
 +
|-
 +
|461
 +
|''STR1''
 +
|[[Os09g0401100]]
 +
|10.1111/j.1365-313X.2011.04842.x
 +
|
 +
* Annotated
 +
|-
 +
|462
 +
|''rep1''
 +
|[[Os09g0410500]]
 +
|10.1104/pp.108.128231
 +
|
 +
* RETARDED PALEA1 Controls Palea Development and Floral Zygomorphy in Rice
 +
|-
 +
|463
 +
|''bc6''
 +
|[[Os09g0422500]]
 +
|10.1093/jxb/erq395
 +
|
 +
* Annotated
 +
|-
 +
|464
 +
|''OsCesA9''
 +
|[[Os09g0422500]]
 +
|10.1104/pp.103.022442
 +
|
 +
* Annotated
 +
|-
 +
|465
 +
|''osgl1-1''
 +
|[[Os09g0426800]]
 +
|10.1093/mp/ssr028
 +
|
 +
* Annotated
 +
|-
 +
|466
 +
|''wsl2''
 +
|[[Os09g0426800]]
 +
|10.1007/s00425-011-1481-1
 +
|
 +
* Annotated
 +
|-
 +
|470
 +
|''PTC1''
 +
|[[Os09g0449000]]
 +
|10.1104/pp.111.175760
 +
|
 +
* Annotated
 +
|-
 +
|471
 +
|''aco1''
 +
|[[Os09g0451000]]
 +
|10.1111/j.1365-3040.2009.02106.x
 +
|
 +
* ACO1, a gene for aminocyclopropane-1-carboxylate oxidase: effects on internode elongation at the heading stage in rice
 +
|-
 +
|472
 +
|''isa3''
 +
|[[Os09g0469400]]
 +
|10.1093/pcp/pcr058
 +
|
 +
* Rice Debranching Enzyme Isoamylase3 Facilitates Starch Metabolism and Affects Plastid Morphogenesis
 +
|-
 +
|473
 +
|''gna1''
 +
|[[Os09g0488000]]
 +
|10.1104/pp.104.058248
 +
|
 +
* A Novel Short-Root Gene Encodes a Glucosamine-6-Phosphate Acetyltransferase Required for Maintaining Normal Root Cell Shape in Rice
 +
|-
 +
|474
 +
|''PAIR2''
 +
|[[Os09g0506800]]
 +
|10.1007/s00438-003-0934-z
 +
|
 +
* An insertional mutation in the rice PAIR2 gene, the ortholog of Arabidopsis ASY1, results in a defect in homologous chromosome pairing during meiosis
 +
|-
 +
|475
 +
|''sgr''
 +
|[[Os09g0532000]]
 +
|10.1105/tpc.106.044891
 +
|
 +
* The Senescence-Induced Staygreen Protein Regulates Chlorophyll Degradation
 +
|-
 +
|476
 +
|''OsAT1/Spl18''
 +
|[[Os10g0195600]]
 +
|10.1007/s11103-006-9130-y
 +
|
 +
* Isolation and molecular characterization of a Spotted leaf 18 mutant by modified activation-tagging in rice
 +
|-
 +
|477
 +
|''brd2''
 +
|[[Os10g0397400]]
 +
|10.1105/tpc.105.030973
 +
|
 +
* Annotated
 +
|-
 +
|478
 +
|''pla1''
 +
|[[Os10g0403000]]
 +
|10.1073/pnas.2636936100
 +
|
 +
* Annotated
 +
|-
 +
|479
 +
|''pair3''
 +
|[[Os10g0405500]]
 +
|10.1111/j.1365-313X.2009.03870.x
 +
|
 +
* Annotated
 +
|-
 +
|480
 +
|''ehd2''
 +
|[[Os10g0419200]]
 +
|10.1104/pp.108.125542
 +
|
 +
* Annotated
 +
|-
 +
|481
 +
|''rid1''
 +
|[[Os10g0419200]]
 +
|10.1073/pnas.0806019105
 +
|
 +
* Annotated
 +
|-
 +
|482
 +
|''OsCesA7''
 +
|[[Os10g0467800]]
 +
|10.1104/pp.103.022442
 +
|
 +
* Annotated
 +
|-
 +
|483
 +
|''wda1''
 +
|[[Os10g0471100]]
 +
|10.1105/tpc.106.042044
 +
|
 +
* Wax-deficient anther1 Is Involved in Cuticle and Wax Production in Rice Anther Walls and Is Required for Pollen Development
 +
|-
 +
|484
 +
|''OsMPK6''
 +
|[[Os10g0533600]]
 +
|10.1007/s00425-007-0541-z
 +
|
 +
* Annotated
 +
|-
 +
|485
 +
|''OsCAO1''
 +
|[[Os10g0567200]]
 +
|10.1007/s11103-005-2066-9
 +
|
 +
* Annotated
 +
|-
 +
|486
 +
|''cao''
 +
|[[Os10g0567400]]
 +
|10.1270/jsbbs.55.361
 +
|
 +
* Annotated
 +
|-
 +
|487
 +
|''jmj6''
 +
|[[Os10g0577600]]
 +
|10.1073/pnas.0805901105
 +
|
 +
* Annotated
 +
|-
 +
|488
 +
|''OsCSLD1''
 +
|[[Os10g0578200]]
 +
|10.1104/pp.106.091546
 +
|
 +
* OsCSLD1, a Cellulose Synthase-Like D1 Gene, Is Required for Root Hair Morphogenesis in Rice
 +
|-
 +
|489
 +
|''phot1a''
 +
|[[Os11g0102200]]
 +
|10.1007/s11103-008-9442-1
 +
|
 +
* Rice phot1a mutation reduces plant growth by affecting photosynthetic responses to light during early seedling growth
 +
|-
 +
|490
 +
|''OsPK1''
 +
|[[Os11g0148500]]
 +
|10.1007/s00425-011-1471-3
 +
|
 +
* Annotated
 +
|-
 +
|491
 +
|''PDIL1''
 +
|[[Os11g0199200]]
 +
|10.1093/jxb/err262
 +
|
 +
* The failure to express a protein disulphide isomerase-like protein results in a floury endosperm and an endoplasmic reticulum stress response in rice
 +
|-
 +
|492
 +
|''rad''
 +
|[[Os11g0210300]]
 +
|10.1270/jsbbs.56.69
 +
|
 +
* Annotated
 +
|-
 +
|493
 +
|''sp1''
 +
|[[Os11g0235200]]
 +
|10.1111/j.1365-313X.2009.03799.x
 +
|
 +
* Annotated
 +
|-
 +
|494
 +
|''Tid1''
 +
|[[Os11g0247300]]
 +
|10.1266/ggs.84.209
 +
|
 +
* Annotated
 +
|-
 +
|495
 +
|''nls1-1D''
 +
|[[Os11g0249000]]
 +
|10.1111/j.1365-313X.2011.04557.x
 +
|
 +
* Annotated
 +
|-
 +
|496
 +
|''lazy1''
 +
|[[Os11g0490600]]
 +
|10.1038/cr.2007.38
 +
|
 +
* Annotated
 +
|-
 +
|497
 +
|''osarf1''
 +
|[[Os11g0523800]]
 +
|10.1007/s11103-009-9474-1
 +
|
 +
* Annotated
 +
|-
 +
|498
 +
|''tld1-D''
 +
|[[Os11g0528700]]
 +
|10.1104/pp.109.146803
 +
|
 +
* Altered Architecture and Enhanced Drought Tolerance in Rice via the Down-Regulation of Indole-3-Acetic Acid by TLD1/OsGH3.13 Activation
 +
|-
 +
|501
 +
|''d27''
 +
|[[Os11g0587000]]
 +
|10.1105/tpc.109.065987
 +
|
 +
* Annotated
 +
|-
 +
|502
 +
|''fon2''
 +
|[[Os11g0595400]]
 +
|10.1093/pcp/pcl025
 +
|
 +
* Conservation and Diversification of Meristem Maintenance Mechanism in Oryza sativa: Function of the FLORAL ORGAN NUMBER2 Gene
 +
|-
 +
|503
 +
|''wdl1''
 +
|[[Os11g0708400]]
 +
|10.1007/s11103-010-9656-x
 +
|
 +
* Mutation in Wilted Dwarf and Lethal 1 (WDL1) causes abnormal cuticle formation and rapid water loss in rice
 +
|-
 +
|504
 +
|''rip1''
 +
|[[Os12g0132400]]
 +
|10.1093/pcp/pcl013
 +
|
 +
* Rice Immature Pollen 1 (RIP1) is a Regulator of Late Pollen Development
 +
|-
 +
|505
 +
|''art1''
 +
|[[Os12g0170400]]
 +
|10.1105/tpc.109.070771
 +
|
 +
* A Zinc Finger Transcription Factor ART1 Regulates Multiple Genes Implicated in Aluminum Tolerance in Rice
 +
|-
 +
|506
 +
|''OsMADS13''
 +
|[[Os12g0207000]]
 +
|10.1111/j.1365-313X.2007.03272.x
 +
|
 +
* The D-lineage MADS-box gene OsMADS13 controls ovule identity in rice
 +
|-
 +
|507
 +
|''ogr1''
 +
|[[Os12g0270200]]
 +
|10.1111/j.1365-313X.2009.03909.x
 +
|
 +
* Rice OGR1 encodes a pentatricopeptide repeat–DYW protein and is essential for RNA editing in mitochondria
 +
|-
 +
|508
 +
|''osatg10b''
 +
|[[Os12g0506800]]
 +
|10.1007/s10059-009-0006-2
 +
|
 +
* Annotated
 +
|-
 +
|509
 +
|''kch1''
 +
|[[Os12g0547500]]
 +
|10.1093/jxb/erq164
 +
|
 +
* A kinesin with calponin-homology domain is involved in premitotic nuclear migration
 +
|-
 +
|513
 +
|''spl11''
 +
|[[Os12g0570000]]
 +
|10.1105/tpc.108.058610
 +
|
 +
* SPIN1, a K Homology Domain Protein Negatively Regulated and Ubiquitinated by the E3 Ubiquitin Ligase SPL11, Is Involved in Flowering Time Control in Rice
 +
|-
 +
|514
 +
|''mel2''
 +
|[[Os12g0572800]]
 +
|10.1371/journal.pgen.1001265
 +
|
 +
* A Novel RNA-Recognition-Motif Protein Is Required for Premeiotic G1/S-Phase Transition in Rice (Oryza sativa L.)
 +
|-
 +
|515
 +
|''gpa1''
 +
|[[Os12g0631100]]
 +
|10.1111/j.1365-313X.2010.04370.x
 +
|
 +
* OsRab5a regulates endomembrane organization and storage protein trafficking in rice endosperm cells
 +
|-
 +
|516
 +
|''ossut2''
 +
|[[Os12g0641400]]
 +
|10.1104/pp.111.176982
 +
|
 +
* Annotated
 +
|-
 +
|517
 +
|''d18''
 +
|[[Os01g0177400]]
 +
|10.1073/pnas.141239398
 +
|
 +
* Annotated
 +
|-
 +
|518
 +
|''Gn1a''
 +
|[[Os01g0197700]]
 +
|10.1126/science.1113373
 +
|
 +
* Cytokinin Oxidase Regulates Rice Grain Production
 +
|-
 +
|520
 +
|''SKC1''
 +
|[[Os01g0307500]]
 +
|10.1038/ng1643
 +
|
 +
* Annotated
 +
|-
 +
|521
 +
|''PSR''
 +
|[[Os01g0357100]]
 +
|10.1073/pnas.0504220102
 +
|
 +
* Isolation of a rice regeneration quantitative trait loci gene and its application to transformation systems
 +
|-
 +
|522
 +
|''SaF''
 +
|[[Os01g0578500]]
 +
|10.1073/pnas.0810108105
 +
|
 +
* Annotated
 +
|-
 +
|523
 +
|''SaM''
 +
|[[Os01g0578700]]
 +
|10.1073/pnas.0810108105
 +
|
 +
* Hybrid male sterility in rice controlled by interaction between divergent alleles of two adjacent genes
 +
|-
 +
|524
 +
|''Rd''
 +
|[[Os01g0633500]]
 +
|10.1111/j.1365-313X.2006.02958.x
 +
|
 +
* The Rc and Rd genes are involved in proanthocyanidin synthesis in rice pericarp
 +
|-
 +
|525
 +
|''Pi37''
 +
|[[Os01g0781700]]
 +
|10.1534/genetics.107.080648
 +
|
 +
* The Blast Resistance Gene Pi37 Encodes a Nucleotide Binding Site–Leucine-Rich Repeat Protein and Is a Member of a Resistance Gene Cluster on Rice Chromosome 1
 +
|-
 +
|526
 +
|''qSH1''
 +
|[[Os01g0848400]]
 +
|10.1126/science.1126410
 +
|
 +
* Annotated
 +
|-
 +
|527
 +
|''qNPQ1-2''
 +
|[[Os01g0869800]]
 +
|10.1073/pnas.1104809108
 +
|
 +
|Finished
 +
|-
 +
|528
 +
|''sd1''
 +
|[[Os01g0883800]]
 +
|10.1038/416701a
 +
|
 +
* Annotated
 +
|-
 +
|529
 +
|''GW2''
 +
|[[Os02g0244100]]
 +
|10.1038/ng2014
 +
|
 +
* Annotated
 +
|-
 +
|530
 +
|''Rf2''
 +
|[[Os02g0274000]]
 +
|10.1111/j.1365-313X.2010.04427.x
 +
|
 +
* The fertility restorer gene, Rf2, for Lead Rice-type cytoplasmic male sterility of rice encodes a mitochondrial glycine-rich protein
 +
|-
 +
|531
 +
|''hbd2''
 +
|[[Os02g0622100]]
 +
|10.1007/s00438-010-0514-y
 +
|
 +
* Annotated
 +
|-
 +
|532
 +
|''Pib''
 +
|[[Os02g0818450]]
 +
|10.1046/j.1365-313X.1999.00498.x
 +
|
 +
* The Pib gene for rice blast resistance belongs to the nucleotide binding and leucine-rich repeat class of plant disease resistance genes
 +
|-
 +
|533
 +
|''qLTG3?1''
 +
|[[Os03g0103300]]
 +
|10.1073/pnas.0805303105
 +
|
 +
* Annotated
 +
|-
 +
|534
 +
|''dth3''
 +
|[[Os03g0122600]]
 +
|10.1007/s00299-011-1129-4
 +
|
 +
* Annotated
 +
|-
 +
|535
 +
|''GS3''
 +
|[[Os03g0407400]]
 +
|10.1007/s00122-006-0218-1
 +
|
 +
* Annotated
 +
|-
 +
|536
 +
|''GRP162''
 +
|[[Os03g0641300]]
 +
|10.1105/tpc.111.093211
 +
|
 +
* The Rice Pentatricopeptide Repeat Protein RF5 Restores Fertility in Hong-Lian Cytoplasmic Male-Sterile Lines via a Complex with the Glycine-Rich Protein GRP162
 +
|-
 +
|537
 +
|''LOX-3''
 +
|[[Os03g0700400]]
 +
| 10.1007/s12374-013-0085-7
 +
|
 +
* Molecular genetic characterization of rice seed lipoxygenase 3 and assessment of its effects on seed longevity
 +
|-
 +
|538
 +
|''Hd6''
 +
|[[Os03g0762000]]
 +
|10.1073/pnas.111136798
 +
|
 +
* Annotated
 +
|-
 +
|539
 +
|''Bph14''
 +
|[[Os03g0848700]]
 +
|10.1073/pnas.0912139106
 +
|
 +
* Annotated
 +
|-
 +
|541
 +
|''Pi21''
 +
|[[Os04g0401000]]
 +
|10.1126/science.1175550
 +
|
 +
* Annotated
 +
|-
 +
|542
 +
|''GIF1''
 +
|[[Os04g0413500]]
 +
|10.1038/ng.220
 +
|
 +
* Annotated
 +
|-
 +
|543
 +
|''Rf17''
 +
|[[Os04g0475900]]
 +
|10.1073/pnas.0901860106
 +
|
 +
* Suppressed expression of RETROGRADE-REGULATED MALE STERILITY restores pollen fertility in cytoplasmic male sterile rice plants
 +
|-
 +
|544
 +
|''BET1''
 +
|[[Os04g0477300]]
 +
|10.1104/pp.110.171470
 +
|
 +
* Suppression of a NAC-Like Transcription Factor Gene Improves Boron-Toxicity Tolerance in Rice
 +
|-
 +
|545
 +
|''OSB2''
 +
|[[Os04g0557500]]
 +
|10.1093/pcp/pce128
 +
|
 +
* The Purple leaf (Pl) Locus of Rice: the Plw Allele has a Complex Organization and Includes Two Genes Encoding Basic Helix-Loop-Helix Proteins Involved in Anthocyanin Biosynthesis
 +
|-
 +
|546
 +
|''OSB1''
 +
|[[Os04g0557800]]
 +
|10.1093/pcp/pce128
 +
|
 +
* The Purple leaf (Pl) Locus of Rice: the Plw Allele has a Complex Organization and Includes Two Genes Encoding Basic Helix-Loop-Helix Proteins Involved in Anthocyanin Biosynthesis
 +
|-
 +
|547
 +
|''Xa1''
 +
|[[Os04g0622600]]
 +
|10.1073/pnas.95.4.1663
 +
|
 +
* Annotated
 +
|-
 +
|548
 +
|''sh4''
 +
|[[Os04g0670900]]
 +
|10.1126/science.1123604
 +
|
 +
* Rice Domestication by Reducing Shattering
 +
|-
 +
|549
 +
|''Xa5''
 +
|[[Os05g0107700]]
 +
|10.1094/MPMI.2004.17.12.1348
 +
|
 +
* Annotated
 +
|-
 +
|550
 +
|''GS5''
 +
|[[Os05g0158500]]
 +
|10.1038/ng.977
 +
|
 +
* Annotated
 +
|-
 +
|551
 +
|''GW5''
 +
|[[DQ991205]]
 +
|10.1038/cr.2008.307
 +
|
 +
* Isolation and initial characterization of GW5, a major QTL associated with rice grain width and weight
 +
|-
 +
|552
 +
|''qSW5''
 +
|[[AB433345_DQ991205]]
 +
|10.1038/ng.169
 +
|
 +
* Deletion in a gene associated with grain size increased yields during rice domestication
 +
|-
 +
|553
 +
|''wx''
 +
|[[Os06g0133000]]
 +
|10.1046/j.1365-313X.1995.7040613.x
 +
|
 +
* Annotated
 +
|-
 +
|554
 +
|''Hd3a''
 +
|[[Os06g0157700]]
 +
|10.1093/pcp/pcf156
 +
|
 +
* Annotated
 +
|-
 +
|555
 +
|''DPL2''
 +
|[[Os06g0184100]]
 +
|10.1073/pnas.1003124107
 +
|
 +
* Rice pollen hybrid incompatibility caused by reciprocal gene loss of duplicated genes
 +
|-
 +
|556
 +
|''S5''
 +
|[[Os06g0213100]]
 +
|10.1073/pnas.0804761105
 +
|
 +
* A triallelic system of S5 is a major regulator of the reproductive barrier and compatibility of indica–japonica hybrids in rice
 +
|-
 +
|557
 +
|''ALK''
 +
|[[Os06g0229800]]
 +
|10.1111/j.1744-7909.2011.01065.x
 +
|
 +
* Annotated
 +
|-
 +
|558
 +
|''Hd1''
 +
|[[Os06g0275000]]
 +
|10.1105/tpc.12.12.2473
 +
|
 +
* Annotated
 +
|-
 +
|559
 +
|''Pi2''
 +
|[[Os06g0286700]]
 +
|10.1094/MPMI-19-1216
 +
|
 +
* Annotated
 +
|-
 +
|560
 +
|''Pi9''
 +
|[[Os06g0286700]]
 +
|10.1534/genetics.105.044891
 +
|
 +
* Annotated
 +
|-
 +
|561
 +
|''Pi25''
 +
|[[Os06g0330100]]
 +
|10.1016/j.jgg.2011.03.010
 +
|
 +
* Annotated
 +
|-
 +
|562
 +
|''Pid3''
 +
|[[Os06g0330100]]
 +
|10.1534/genetics.109.102871
 +
|
 +
* Annotated
 +
|-
 +
|563
 +
|''Pi-d2''
 +
|[[Os06g0494100]]
 +
|10.1111/j.1365-313X.2006.02739.x
 +
|
 +
* Annotated
 +
|-
 +
|564
 +
|''Xa27''
 +
|[[Os06g0598900]]
 +
|10.1038/nature03630
 +
|
 +
* R gene expression induced by a type-III effector triggers disease resistance in rice
 +
|-
 +
|566
 +
|''PROG1''
 +
|[[Os07g0153600]]
 +
|10.1038/ng.197
 +
|
 +
* Control of a key transition from prostrate to erect growth in rice domestication
 +
|-
 +
|567
 +
|''Rc''
 +
|[[Os07g0211500]]
 +
|10.1105/tpc.105.038430
 +
|
 +
* Caught Red-Handed: Rc Encodes a Basic Helix-Loop-Helix Protein Conditioning Red Pericarp in Rice
 +
|-
 +
|569
 +
|''OsHMA3''
 +
|[[Os07g0232900]]
 +
|10.1073/pnas.1005396107
 +
|
 +
* Annotated
 +
|-
 +
|571
 +
|''Ghd7''
 +
|[[Os07g0261200]]
 +
|10.1038/ng.143
 +
|
 +
* Annotated
 +
|-
 +
|572
 +
|''Sdr4''
 +
|[[Os07g0585700]]
 +
|10.1073/pnas.0911965107
 +
|
 +
* Annotated
 +
|-
 +
|573
 +
|''Pi36''
 +
|[[Os08g0150100]]
 +
|10.1534/genetics.107.075465
 +
|
 +
* The in Silico Map-Based Cloning of Pi36, a Rice Coiled-Coil–Nucleotide-Binding Site–Leucine-Rich Repeat Gene That Confers Race-Specific Resistance to the Blast Fungus
 +
|-
 +
|574
 +
|''DTH8''
 +
|[[Os08g0174500]]
 +
|10.1104/pp.110.156943
 +
|
 +
* Annotated
 +
|-
 +
|578
 +
|''Badh2''
 +
|[[Os08g0424500]]
 +
|10.1105/tpc.108.058917
 +
|
 +
* Annotated
 +
|-
 +
|579
 +
|''WFP''
 +
|[[Os08g0509600]]
 +
|10.1038/ng.592
 +
|
 +
* Annotated
 +
|-
 +
|580
 +
|''IPA1''
 +
|[[Os08g0509600]]
 +
|10.1038/ng.591
 +
|
 +
* Annotated
 +
|-
 +
|581
 +
|''xa13''
 +
|[[Os08g0535200]]
 +
|10.1101/gad.1416306
 +
|
 +
* Annotated
 +
|-
 +
|582
 +
|''Sub1A''
 +
|[[AAZ06207]]
 +
|10.1038/nature04920
 +
|
 +
* Sub1A is an ethylene-response-factor-like gene that confers submergence tolerance to rice
 +
|-
 +
|584
 +
|''DEP1''
 +
|[[Os09g0441900]]
 +
|10.1038/ng.352
 +
|
 +
* Annotated
 +
|-
 +
|585
 +
|''TAC1''
 +
|[[Os09g0529300]]
 +
|10.1111/j.1365-313X.2007.03284.x
 +
|
 +
* Annotated
 +
|-
 +
|586
 +
|''CPDphotolyase''
 +
|[[Os10g0167600]]
 +
|10.1093/pcp/pch215
 +
|
 +
* Annotated
 +
|-
 +
|588
 +
|''Ehd1''
 +
|[[Os10g0463400]]
 +
|10.1101/gad.1189604
 +
|
 +
* Ehd1, a B-type response regulator in rice, confers short-day promotion of flowering and controls FT-like gene expression independently of Hd1
 +
|-
 +
|589
 +
|''RF1A''
 +
|[[Os10g0497300]]
 +
|10.1105/tpc.105.038240
 +
|
 +
* Annotated
 +
|-
 +
|591
 +
|''Rf-1''
 +
|[[Os10g0497432]]
 +
|10.1046/j.1365-313X.2003.01961.x
 +
|
 +
* Map-based cloning of a fertility restorer gene, Rf-1, in rice (Oryza sativa L.)
 +
|-
 +
|592
 +
|''RF1B''
 +
|[[Os10g0499500]]
 +
|10.1105/tpc.105.038240
 +
|
 +
* Cytoplasmic Male Sterility of Rice with Boro II Cytoplasm Is Caused by a Cytotoxic Peptide and Is Restored by Two Related PPR Motif Genes via Distinct Modes of mRNA Silencing
 +
|-
 +
|593
 +
|''Pia''
 +
|[[Os11g0225100]]
 +
|10.1111/j.1365-313X.2011.04502.x
 +
|
 +
* Annotated
 +
|-
 +
|594
 +
|''Xa21''
 +
|[[Os11g0559200]]
 +
|10.1126/science.270.5243.1804
 +
|
 +
* Annotated
 +
|-
 +
|595
 +
|''Pb1''
 +
|[[Os11g0598500]]
 +
|10.1111/j.1365-313X.2010.04348.x
 +
|
 +
* Durable panicle blast-resistance gene Pb1 encodes an atypical CC-NBS-LRR protein and was generated by acquiring a promoter through local genome duplication
 +
|-
 +
|596
 +
|''Pik1''
 +
|[[Os11g0687800]]
 +
|10.1111/j.1469-8137.2010.03462.x
 +
|
 +
* The isolation and characterization of Pik, a rice blast resistance gene which emerged after rice domestication
 +
|-
 +
|597
 +
|''Pik2''
 +
|[[Os11g0687900]]
 +
|10.1111/j.1469-8137.2010.03462.x
 +
|
 +
* The isolation and characterization of Pik, a rice blast resistance gene which emerged after rice domestication
 +
|-
 +
|599
 +
|''Pik-p''
 +
|[[Os11g0689100]]
 +
|10.1007/s00122-010-1506-3
 +
|
 +
* The Pik-p resistance to Magnaporthe oryzae in rice is mediated by a pair of closely linked CC-NBS-LRR genes
 +
|-
 +
|600
 +
|''Xa3''
 +
|[[Os11g0692300]]
 +
|10.1007/s00122-006-0388-x
 +
|
 +
* Annotated
 +
|-
 +
|601
 +
|''Xa26''
 +
|[[Os11g0692300]]
 +
|10.1046/j.1365-313X.2003.01976.x
 +
| Xa26, a gene conferring resistance to Xanthomonas oryzae pv. oryzae in rice, encodes an LRR receptor kinase-like protein
 +
|
 +
|-
 +
|602
 +
|''Pi-ta''
 +
|[[Os12g0281300]]
 +
|10.1105/tpc.12.11.2033
 +
| A Single Amino Acid Difference Distinguishes Resistant and Susceptible Alleles of the Rice Blast Resistance Gene Pi-ta
 +
|
 +
|-
 +
|606
 +
|''OsCOIN''
 +
|[[Os01g0104100]]
 +
|10.1007/s00425-007-0548-5
 +
|
 +
|Finished
 +
|-
 +
|607
 +
|''OsIRL''
 +
|[[Os01g0106400]]
 +
|10.1111/j.1399-3054.2009.01290.x
 +
|
 +
|Finished
 +
|-
 +
|609
 +
|''OsDREB2A''
 +
|[[Os01g0165000]]
 +
|10.1007/s10529-011-0620-x
 +
|
 +
|Finished
 +
|-
 +
|610
 +
|''OsIAA1''
 +
|[[Os01g0178500]]
 +
|10.1007/s11103-009-9474-1
 +
|
 +
|Annotated
 +
|-
 +
|611
 +
|''OsCDR1''
 +
|[[Os01g0178600]]
 +
|10.1094/MPMI-22-12-1635
 +
|
 +
|Finished
 +
|-
 +
|613
 +
|''NH1''
 +
|[[Os01g0194300]]
 +
|10.1094/MPMI-18-0511
 +
|
 +
|Annotated
 +
|-
 +
|614
 +
|''OsRAA1''
 +
|[[Os01g0257300]]
 +
|10.1104/pp.104.041996
 +
|
 +
|Annotated
 +
|-
 +
|615
 +
|''CYP734A6''
 +
|[[Os01g0388000]]
 +
|10.1111/j.1365-313X.2011.04567.x
 +
|
 +
|Finished
 +
|-
 +
|616
 +
|''OsWRKY11''
 +
|[[Os01g0626400]]
 +
|10.1007/s00299-008-0614-x
 +
|
 +
|Annotated
 +
|-
 +
|617-1
 +
|''SLRL1''
 +
|[[Os01g0646300]]
 +
|10.1111/j.1365-313X.2005.02562.x
 +
|
 +
|Finished
 +
|-
 +
|617-2
 +
|''SLRL2''
 +
|[[Os05g0574900]]
 +
|10.1111/j.1365-313X.2005.02562.x
 +
|
 +
|Finished
 +
|-
 +
|618
 +
|''RACK1A''
 +
|[[Os01g0686800]]
 +
|10.1105/tpc.107.054395
 +
|
 +
|Annotated
 +
|-
 +
|619
 +
|''OsWRKY13''
 +
|[[Os01g0750100]]
 +
|10.1094/MPMI-20-5-0492
 +
|
 +
|Finished
 +
|-
 +
|620
 +
|''OsKAT1''
 +
|[[Os01g0756700]]
 +
|10.1104/pp.107.101154
 +
|
 +
|Annotated
 +
|-
 +
|621
 +
|''OsCIPK12''
 +
|[[Os01g0759400]]
 +
|10.1104/pp.107.101295
 +
|
 +
|Annotated
 +
|-
 +
|623
 +
|''GH3-2''
 +
|[[Os01g0764800]]
 +
|10.1104/pp.110.163774
 +
|
 +
|Annotated
 +
|-
 +
|624
 +
|''OsGH3.1''
 +
|[[Os01g0785400]]
 +
|10.1094/MPMI-22-2-0201
 +
|
 +
|Finished
 +
|-
 +
|626
 +
|''AP37''
 +
|[[Os01g0797600]]
 +
|10.1104/pp.109.137554
 +
|
 +
|Finished
 +
|-
 +
|627
 +
|''ZFP179''
 +
|[[Os01g0839100]]
 +
|10.1093/jxb/erq120
 +
|
 +
|Annotated
 +
|-
 +
|628
 +
|''OsMYB3R-2''
 +
|[[Os01g0841500]]
 +
|10.1104/pp.108.133454
 +
|
 +
|Finished
 +
|-
 +
|630
 +
|''SAPK4''
 +
|[[Os01g0869900]]
 +
|10.1186/1471-2229-8-49
 +
|
 +
|Finished
 +
|-
 +
|631
 +
|''SNAC2''
 +
|[[Os01g0884300]]
 +
|10.1007/s11103-008-9309-5
 +
|
 +
|Finished
 +
|-
 +
|633
 +
|''OsDREB1F''
 +
|[[Os01g0968800]]
 +
|10.1007/s11103-008-9340-6
 +
|
 +
|Annotated
 +
|-
 +
|635
 +
|''BiP''
 +
|[[Os02g0115900]]
 +
|10.1093/pcp/pcp098
 +
|
 +
|Finished
 +
|-
 +
|636
 +
|''BiP3''
 +
|[[Os02g0115900]]
 +
|10.1371/journal.pone.0009262
 +
|
 +
|Finished
 +
|-
 +
|637
 +
|''OsRacB''
 +
|[[Os02g0120800]]
 +
|10.1016/j.plaphy.2005.12.001
 +
|
 +
|Finished
 +
|-
 +
|638
 +
|''OsCYP2''
 +
|[[Os02g0121300]]
 +
|10.1186/1471-2229-11-34
 +
|
 +
|Finished
 +
|-
 +
|639
 +
|''OsMAPK33''
 +
|[[Os02g0148100]]
 +
|10.1007/s12038-011-9002-8
 +
|
 +
|Annotated
 +
|-
 +
|641
 +
|''OsWRKY71''
 +
|[[Os02g0181300]]
 +
|10.1016/j.jplph.2006.07.006
 +
|
 +
|Finished
 +
|-
 +
|642
 +
|''OsAGAP''
 +
|[[Os02g0198300]]
 +
|10.1111/j.1365-313X.2006.02898.x
 +
|
 +
|Annotated 
 +
|-
 +
|645
 +
|''RCN2''
 +
|[[Os02g0531600]]
 +
|10.1046/j.1365-313X.2002.01255.x
 +
|
 +
|Annotated
 +
|-
 +
|647
 +
|''OsTPP1''
 +
|[[Os02g0661100]]
 +
|10.1007/s00425-008-0729-x
 +
|
 +
|Annotated
 +
|-
 +
|648
 +
|''MAIF1''
 +
|[[Os02g0671100]]
 +
|10.1093/mp/ssq066
 +
|
 +
|Finished
 +
|-
 +
|649
 +
|''SBPase''
 +
|[[Os02g0698000]]
 +
|10.1007/s00299-006-0299-y
 +
|
 +
|Finished
 +
|-
 +
|650
 +
|''OsFAD2''
 +
|[[Os02g0716500]]
 +
|10.1007/s11032-011-9587-5
 +
|
 +
|Finished
 +
|-
 +
|651
 +
|''OsHAP3E''
 +
|[[Os02g0725700]]
 +
|10.1016/j.plantsci.2011.04.009
 +
|
 +
|Finished
 +
|-
 +
|652
 +
|''OsSKIPa''
 +
|[[Os02g0759800]]
 +
|10.1073/pnas.0901940106
 +
|
 +
|Finished
 
|-
 
|-
−
|''OsYABBY6''
+
|653
−
|[[Os12g0621100]]
+
|''Orysa;KRP1''
−
|LOC_Os12g42610
+
|[[Os02g0762400]]
−
|Taiyo Toriba;Kohsuke Harada;Atsushi Takamura;Hidemitsu Nakamura;Hiroaki Ichikawa;Takuya Suzaki;Hiro-Yuki Hirano Molecular characterization the YABBY gene family in Oryza sativa and expression analysis of OsYABBY1 Molecular Genetics and Genomics, 2007, 277(5): 457-468
+
|10.1104/pp.106.087056
 +
|
 +
|Finished
 
|-
 
|-
−
|''OsHAP2F''
+
|654
−
|[[Os12g0618600]]
+
|''mtHsp70''
−
|LOC_Os12g42400
+
|[[Os02g0774300]]
−
|Thiruvengadam Thirumurugan;Yukihiro Ito;Takahiko Kubo;Akiko Serizawa;Nori Kurata Identification, characterization and interaction of HAP family genes in rice Molecular Genetics and Genomics, 2008, 279(3): 279-289
+
|10.1016/j.febslet.2010.11.051
 +
|
 +
|Finished
 
|-
 
|-
−
|''OsPPKL3''
+
|657
−
|[[Os12g0617900]]
+
|''RWC3''
−
|LOC_Os12g42310
+
|[[Os02g0823100]]
−
| Xiaojun Zhang;Jianfei Wang;Ji Huang;Hongxia Lan;Cailin Wang;Congfei Yin;Yunyu Wu;Haijuan Tang;Qian Qian;Jiayang Li;Hongsheng Zhang Rare allele of OsPPKL1 associated with grain length causes extra-large grain and a significant yield increase in rice Proceedings of the National Academy of Sciences, 2012, 109(52): 21534-21539
+
|10.1093/pcp/pch058
 +
|
 +
|Finished
 +
|-
 +
|658
 +
|''CDPK13''
 +
|[[Os03g0128700]]
 +
|10.1007/s00438-007-0220-6
 +
|
 +
|Annotated
 +
|-
 +
|659
 +
|''OsCDPK13''
 +
|[[Os03g0128700]]
 +
|10.1007/s11103-004-1178-y
 +
|
 +
|Annotated
 +
|-
 +
|661
 +
|''OsTIFY11a''
 +
|[[Os03g0180800]]
 +
|10.1007/s11103-009-9524-8
 +
|
 +
|Annotated
 +
|-
 +
|662
 +
|''GS1;2''
 +
|[[Os03g0223400]]
 +
|10.1007/s00299-008-0665-z
 +
|
 +
|Annotated
 +
|-
 +
|666
 +
|''sHSP17.7''
 +
|[[Os03g0267200]]
 +
|10.1007/s00299-007-0470-0
 +
|
 +
|Annotated
 +
|-
 +
|667
 +
|''OsSDIR1''
 +
|[[Os03g0272300]]
 +
|10.1007/s11103-011-9775-z
 +
|
 +
|Annotated
 +
|-
 +
|668
 +
|''OsAPXa''
 +
|[[Os03g0285700]]
 +
|10.1007/s00299-010-0985-7
 +
|
 +
|Finished
 +
|-
 +
|669
 +
|''OsCIPK03''
 +
|[[Os03g0319400]]
 +
|10.1104/pp.107.101295
 +
|
 +
|Annotated
 +
|-
 +
|671
 +
|''OsIPT2''
 +
|[[Os03g0356900]]
 +
|10.1104/pp.106.085811
 +
|
 +
|Annotated
 +
|-
 +
|674
 +
|''OSH1''
 +
|[[Os03g0727000]]
 +
|10.1105/tpc.5.9.1039
 +
|
 +
|Finished
 +
|-
 +
|675
 +
|''OsbHLH148''
 +
|[[Os03g0741100]]
 +
|10.1111/j.1365-313X.2010.04477.x
 +
|
 +
|Annotated
 +
|-
 +
|676
 +
|''OSH43''
 +
|[[Os03g0771500]]
 +
|10.1006/dbio.2000.9624
 +
|
 +
|Finished
 +
|-
 +
|677
 +
|''OsIPT4''
 +
|[[Os03g0810100]]
 +
|10.1104/pp.106.085811
 +
|
 +
|Finished
 +
|-
 +
|678
 +
|''SNAC1''
 +
|[[Os03g0815100]]
 +
|10.1073/pnas.0604882103
 +
|
 +
|Annotated
 +
|-
 +
|680
 +
|''ZFP182''
 +
|[[Os03g0820300]]
 +
|10.1016/j.bbaexp.2007.02.006
 +
|
 +
|Annotated
 +
|-
 +
|685
 +
|''OsOxi1''
 +
|[[Os04g0488700]]
 +
|10.1093/pcp/pcq132
 +
|
 +
|Annotated
 +
|-
 +
|686
 +
|''OsRDCP1''
 +
|[[Os04g0530500]]
 +
|10.1016/j.plantsci.2011.02.008
 +
|
 +
|Annotated
 +
|-
 +
|687
 +
|''OsDREB1E''
 +
|[[Os04g0572400]]
 +
|10.1007/s10529-008-9811-5
 +
|
 +
|Finished
 +
|-
 +
|688
 +
|''OsCDPK7''
 +
|[[Os04g0584600]]
 +
|10.1046/j.1365-313x.2000.00787.x
 +
|
 +
|Annotated
 +
|-
 +
|689
 +
|''OsAP2-39''
 +
|[[Os04g0610400]]
 +
|10.1371/journal.pone.0025216
 +
|
 +
|Finished
 +
|-
 +
|690
 +
|''ostgap1''
 +
|[[Os04g0637000]]
 +
|10.1074/jbc.M109.036871
 +
|
 +
|Finished
 +
|-
 +
|691
 +
|''GS2''
 +
|[[Os04g0659100]]
 +
|10.1023/A:1006408712416
 +
|
 +
|Finished
 +
|-
 +
|692
 +
|''OsRR6''
 +
|[[Os04g0673300]]
 +
|10.1093/pcp/pcm022
 +
|
 +
|Finished
 +
|-
 +
|694
 +
|''OSH71''
 +
|[[Os05g0129700]]
 +
|10.1006/dbio.2000.9624
 +
|
 +
|Finished
 +
|-
 +
|695
 +
|''OsLti6b''
 +
|[[Os05g0138300]]
 +
|10.1007/s00299-006-0297-0
 +
|
 +
|Annotated
 +
|-
 +
|696
 +
|''OsPYL/RCAR5''
 +
|[[Os05g0213500]]
 +
|10.1093/jxb/err338
 +
|
 +
|Annotated
 +
|-
 +
|698
 +
|''OsWRKY53''
 +
|[[Os05g0343400]]
 +
|10.1016/j.bbaexp.2007.04.006
 +
|
 +
|Finished
 +
|-
 +
|699
 +
|''OsDREB2B''
 +
|[[Os05g0346200]]
 +
|10.1007/s10529-008-9811-5
 +
|
 +
|Finished
 +
|-
 +
|700
 +
|''DEPG1''
 +
|[[Os05g0365300]]
 +
|10.1007/s11033-011-1122-6
 +
|Over-expression in the nucleotide-binding site-leucine rich repeat gene DEPG1 increases susceptibility to bacterial leaf streak disease in transgenic rice plants
 +
|Susceptibility to Biotic Stress
 +
|-
 +
|701
 +
|''Gns1''
 +
|[[Os05g0375400]]
 +
|10.1023/A:1020714426540
 +
|Characterization of transgenic rice plants over-expressing the stress-inducible beta-glucanase gene Gns1
 +
|
 +
|-
 +
|702
 +
|''OsISA2''
 +
|[[Os05g0393700]]
 +
|10.1104/pp.111.173435
 +
|Functional diversity of isoamylase oligomers: the ISA1 homo-oligomer is essential for amylopectin biosynthesis in rice endosperm
 +
|
 +
|-
 +
|703
 +
|''OsTPS1''
 +
|[[Os05g0518600]]
 +
|10.1007/s00425-011-1458-0
 +
|Overexpression of the trehalose-6-phosphate synthase gene OsTPS1 enhances abiotic stress tolerance in rice
 +
|Abiotic stress
 +
|-
 +
|704
 +
|''OsLEA3-1''
 +
|[[Os05g0542500]]
 +
|10.1007/s00122-007-0538-9
 +
|
 +
|Annotated
 +
|-
 +
|705-1
 +
|''OsIPT7''
 +
|[[Os05g0551700]]
 +
|10.1104/pp.106.085811
 +
|
 +
|Finished
 +
|-
 +
|705-2
 +
|''OsIPT5''
 +
|[[Os07g0211700]]
 +
|10.1104/pp.106.085811
 +
|
 +
|Finished
 +
|-
 +
|705-3
 +
|''OsIPT4''
 +
|[[Os03g0810100]]
 +
|10.1104/pp.106.085811
 +
|
 +
|Finished
 +
|-
 +
|705-4
 +
|''OsIPT2''
 +
|[[Os03g0356900]]
 +
|10.1104/pp.106.085811
 +
|
 +
|Finished
 +
|-
 +
|705-5
 +
|''OsIPT8''
 +
|[[Os01g0688300]]
 +
|10.1104/pp.106.085811
 +
|
 +
|Finished
 +
|-
 +
|705-6
 +
|''OsIPT10''
 +
|[[Os06g0729800]]
 +
|10.1104/pp.106.085811
 +
|
 +
|Finished
 +
|-
 +
|706
 +
|''OsRAN2''
 +
|[[Os05g0574500]]
 +
|10.1111/j.1365-3040.2010.02225.x
 +
|
 +
|Annotated
 +
|-
 +
|707
 +
|''OsHDT1''
 +
|[[Os05g0597100]]
 +
|10.1371/journal.pone.0021789
 +
|
 +
|Annotated
 +
|-
 +
|708
 +
|''OsDREB1C''
 +
|[[Os06g0127100]]
 +
|10.1093/pcp/pci230
 +
|
 +
|Annotated
 +
|-
 +
|709
 +
|''OsENOD93-1''
 +
|[[Os06g0142350]]
 +
|10.1111/j.1365-3040.2009.02032.x
 +
|
 +
|Annotated
 +
|-
 +
|710
 +
|''OsPTF1''
 +
|[[Os06g0193400]]
 +
|10.1104/pp.105.063115
 +
|
 +
|Annotated
 +
|-
 +
|711
 +
|''bu1''
 +
|[[Os06g0226500]]
 +
|10.1104/pp.109.140806
 +
|
 +
|Finished
 +
|-
 +
|712
 +
|''HOX1a''
 +
|[[Os06g0229300]]
 +
|10.1111/j.1744-7909.2011.01075.x
 +
|
 +
|Finished
 +
|-
 +
|713
 +
|''OsGLK1''
 +
|[[Os06g0348800]]
 +
|10.1093/pcp/pcp138
 +
|
 +
|Annotated
 +
|-
 +
|714-1
 +
|''OsHDAC1''
 +
|[[Os06g0583400]]
 +
|10.1046/j.1365-313X.2003.01650.x
 +
|
 +
|Finished
 +
|-
 +
|714-2
 +
|''OsHDAC2''
 +
|[[Os02g0215200]]
 +
|10.1046/j.1365-313X.2003.01650.x
 +
|
 +
|Finished
 +
|-
 +
|714-3
 +
|''OsHDAC3''
 +
|[[Os02g0214900]]
 +
|10.1046/j.1365-313X.2003.01650.x
 +
|
 +
|Finished
 +
|-
 +
|715
 +
|''CYP734A4''
 +
|[[Os06g0600400]]
 +
|10.1111/j.1365-313X.2011.04567.x
 +
|
 +
|Finished
 +
|-
 +
|716
 +
|''OsSPX1''
 +
|[[Os06g0603600]]
 +
|10.1111/j.1365-313X.2008.03734.x
 +
|
 +
|Finished
 +
|-
 +
|717
 +
|''OsiSAP8''
 +
|[[Os06g0612800]]
 +
|10.1007/s11103-007-9284-2
 +
|
 +
|Finished
 +
|-
 +
|718
 +
|''OVP1''
 +
|[[Os06g0644200]]
 +
|10.1016/j.plaphy.2010.09.014
 +
|
 +
|Finished
 +
|-
 +
|721
 +
|''YK1''
 +
|[[Os06g0651100]]
 +
|10.1023/A:1019275218830
 +
|
 +
|Finished
 +
|-
 +
|722
 +
|''OsPIN2''
 +
|[[Os06g0660200]]
 +
|10.1111/j.1467-7652.2011.00637.x
 +
|
 +
|Finished
 +
|-
 +
|723-1
 +
|''OSH1''
 +
|[[Os03g0727000]]
 +
|10.1006/dbio.2000.9624
 +
|
 +
|Finished
 +
|-
 +
|723-2
 +
|''OSH15''
 +
|[[Os07g0129700]]
 +
|10.1006/dbio.2000.9624
 +
|
 +
|Finished
 +
|-
 +
|723-3
 +
|''OSH43''
 +
|[[Os03g0771500]]
 +
|10.1006/dbio.2000.9624
 +
|
 +
|Finished
 +
|-
 +
|723-4
 +
|''OSH6''
 +
|[[Os01g0302500]]
 +
|10.1006/dbio.2000.9624
 +
|
 +
|Finished
 +
|-
 +
|723-5
 +
|''OSH71''
 +
|[[Os05g0129700]]
 +
|10.1006/dbio.2000.9624
 +
|
 +
|Finished
 +
|-
 +
|725
 +
|''OsNek3''
 +
|[[Os07g0176600]]
 +
|10.1093/pcp/pcp026
 +
|
 +
|Finished
 +
|-
 +
|726
 +
|''OsNRAMP1''
 +
|[[Os07g0258400]]
 +
|10.1093/jxb/err136
 +
|
 +
|Finished
 +
|-
 +
|727
 +
|''OsPHR2''
 +
|[[Os07g0438800]]
 +
|10.1104/pp.107.111443
 +
|
 +
|Finished
 +
|-
 +
|728
 +
|''CrtintP1''
 +
|[[Os07g0498800]]
 +
|10.1007/s00438-007-0220-6
 +
|
 +
|Finished
 +
|-
 +
|729
 +
|''GH3-8''
 +
|[[Os07g0592600]]
 +
|10.1105/tpc.107.055657
 +
|
 +
|Finished
 +
|-
 +
|730
 +
|''OsMADS18''
 +
|[[Os07g0605200]]
 +
|10.1104/pp.104.045039
 +
|
 +
|Finished
 +
|-
 +
|731
 +
|''OsNHX1''
 +
|[[Os07g0666900]]
 +
|10.1093/pcp/pch014
 +
|
 +
|Finished
 +
|-
 +
|733
 +
|''OsGAPC3''
 +
|[[Os08g0126300]]
 +
|10.1007/s11240-011-9950-6
 +
|
 +
|Finished
 +
|-
 +
|735
 +
|''OsDOG''
 +
|[[Os08g0504700]]
 +
|10.1016/j.jplph.2010.12.013
 +
|
 +
|Finished
 +
|-
 +
|737
 +
|''OsCPK21''
 +
|[[Os08g0540400]]
 +
|10.1007/s11103-010-9717-1
 +
|
 +
|Finished
 +
|-
 +
|740
 +
|''OsCO3''
 +
|[[Os09g0240200]]
 +
|10.1007/s00425-008-0742-0
 +
|
 +
|Finished
 +
|-
 +
|741
 +
|''OsWRKY76''
 +
|[[Os09g0417600]]
 +
|10.1007/s12284-010-9039-6
 +
|
 +
|Finished
 +
|-
 +
|743
 +
|''OsbZIP72''
 +
|[[Os09g0456200]]
 +
|10.1007/s00425-008-0857-3
 +
|
 +
|Finished
 +
|-
 +
|744
 +
|''OsEATB''
 +
|[[Os09g0457900]]
 +
|10.1104/pp.111.179945
 +
|
 +
|Finished
 +
|-
 +
|745
 +
|''Oshox4''
 +
|[[Os09g0470500]]
 +
|10.1007/s11103-007-9270-8
 +
|
 +
|Finished
 +
|-
 +
|746
 +
|''OsTFX1''
 +
|[[Os09g0474000]]
 +
|10.1073/pnas.0701742104
 +
|
 +
|Finished
 +
|-
 +
|747
 +
|''RF2a''
 +
|[[Os09g0516200]]
 +
|10.1073/pnas.0810303105
 +
|
 +
|Finished
 +
|-
 +
|748
 +
|''OsDREB1B''
 +
|[[Os09g0522000]]
 +
|10.1093/pcp/pci230
 +
|
 +
|Finished
 +
|-
 +
|749
 +
|''OsDREB1A''
 +
|[[Os09g0522200]]
 +
|10.1093/pcp/pci230
 +
|
 +
|Finished
 +
|-
 +
|750
 +
|''OsPIP2;7''
 +
|[[Os09g0541000]]
 +
|10.1093/pcp/pcn166
 +
|
 +
|Finished
 +
|-
 +
|751
 +
|''SAUR39''
 +
|[[Os09g0545300]]
 +
|10.1104/pp.109.143875
 +
|
 +
|Finished
 +
|-
 +
|753-1
 +
|''OsSPX1''
 +
|[[Os06g0603600]]
 +
|10.1111/j.1744-7909.2009.00834.x
 +
|
 +
|Annotated
 +
|-
 +
|753-2
 +
|''OsSPX2''
 +
|[[Os02g0202200]]
 +
|10.1111/j.1744-7909.2009.00834.x
 +
|
 +
|Annotated
 +
|-
 +
|753
 +
|''OsSPX3''
 +
|[[Os10g0392600]]
 +
|10.1111/j.1744-7909.2009.00834.x
 +
|
 +
|Annotated
 +
|-
 +
|753
 +
|''OsSPX4''
 +
|[[Os03g0827500]]
 +
|10.1111/j.1744-7909.2009.00834.x
 +
|
 +
|Annotated
 
|-
 
|-
−
|''OsNCED5''  
+
|753
−
|[[Os12g0617400]]
+
|''OsSPX5''
−
|LOC_Os12g42280
+
|[[Os03g0406100]]
−
|Guohui Zhu;Nenghui Ye;Jianhua Zhang Glucose-Induced Delay of Seed Germination in Rice is Mediated by the Suppression of ABA Catabolism Rather Than an Enhancement of ABA Biosynthesis Plant and Cell Physiology, 2009, 50(3): 644-651
+
|10.1111/j.1744-7909.2009.00834.x
 +
|  
 +
|Annotated
 
|-
 
|-
−
|''OsPCF8''  
+
|753
−
|[[Os12g0616400]]
+
|''OsSPX6''
−
|LOC_Os12g42190
+
|[[Os07g0614700]]
−
|CHUNHUA YANG;DAYONG LI;DONGHAI MAO;XUE LIU;CHENGJUN JI;XIAOBING LI;XIANFENG ZHAO;ZHUKUAN CHENG;CAIYAN CHEN;LIHUANG ZHU Overexpression of microRNA319 impacts leaf morphogenesis and leads to enhanced cold tolerance in rice (Oryza sativa L.) Plant, Cell & Environment, 2013, 36(12): 2207-2218
+
|10.1111/j.1744-7909.2009.00834.x
 +
|
 +
|Annotated
 
|-
 
|-
−
|''OsPID''
+
|754
−
|[[Os12g0614600]]
+
|''OsiICK6''
−
|LOC_Os12g42020
+
|[[Os10g0471700]]
−
|Yutaka Morita;Junko Kyozuka Characterization of OsPID, the Rice Ortholog of PINOID, and its Possible Involvement in the Control of Polar Auxin Transport Plant and Cell Physiology, 2007, 48(3): 540-549
+
|10.1093/aob/mcr057
 +
|
 +
|Finished
 
|-
 
|-
−
|''OsARF25''
+
|755
−
|[[Os12g0613700]]
+
|''OsMADS56''
−
|LOC_Os12g41950
+
|[[Os10g0536100]]
−
| YanHua Qi;SuiKang Wang;ChenJia Shen;SaiNa Zhang;Yue Chen;YanXia Xu;Yu Liu;YunRong Wu;DeAn Jiang OsARF12, a transcription activator on auxin response gene, regulates root elongation and affects iron accumulation in rice (Oryza sativa) New Phytologist, 2012, 193(1): 109-120
+
|10.1111/j.1365-3040.2009.02008.x
 +
|
 +
|Finished
 
|-
 
|-
−
|''OsTRBF2''
+
|756
−
|[[Os12g0613300]]
+
|''MYBS3''
−
|LOC_Os12g41920
+
|[[Os10g0561400]]
−
| Mi Young Byun;Jong-Pil Hong;Woo Taek Kim Identification and characterization of three telomere repeat-binding factors in rice Biochemical and Biophysical Research Communications, 2008, 372(1): 85-90
+
|10.1104/pp.110.153015
 +
|
 +
|Annotated
 
|-
 
|-
−
|''OsHAP2B''  
+
|757
−
|[[Os12g0613000]]
+
|''OsMSRA4.1''
−
|LOC_Os12g41880
+
|[[Os10g0563600]]
−
|Thiruvengadam Thirumurugan;Yukihiro Ito;Takahiko Kubo;Akiko Serizawa;Nori Kurata Identification, characterization and interaction of HAP family genes in rice Molecular Genetics and Genomics, 2008, 279(3): 279-289
+
|10.1007/s00425-009-0934-2
 +
|
 +
|Annotated
 
|-
 
|-
−
|''OSHB3''  
+
|758
−
|[[Os12g0612700]]
+
|''Rir1b''
−
|LOC_Os12g41860
+
|[[Os10g0569400]]
−
|Jun-Ichi Itoh;Ken-Ichiro Hibara;Yutaka Sato;Yasuo Nagato Developmental Role and Auxin Responsiveness of Class III Homeodomain Leucine Zipper Gene Family Members in Rice Plant Physiology, 2008, 147(4): 1960-1975
+
|10.1023/A:1006423232753
 +
|
 +
|Finished
 
|-
 
|-
−
|''OspPLAIIIζ''  
+
|759
−
|[[Os12g0611300]]
+
|''WOX3''
−
|LOC_Os12g41720
+
|[[Os11g0102100]]
−
|Guangmeng Liu;Ke Zhang;Jun Ai;Xianjun Deng;Yueyun Hong;Xuemin Wang Patatin-related phospholipase A, pPLAIIIα, modulates the longitudinal growth of vegetative tissues and seeds in rice Journal of Experimental Botany, 2015, 66(21): 6945-6955
+
|10.1104/pp.107.095737
 +
|
 +
|Annotated
 
|-
 
|-
−
|''OMTN3''  
+
|760
−
|[[Os12g0610600]]
+
|''OsCIPK15''
−
|LOC_Os12g41680
+
|[[Os11g0113700]]
−
|Yujie Fang;Kabin Xie;Lizhong Xiong Conserved miR164-targeted NAC genes negatively regulate drought resistance in rice Journal of Experimental Botany, 2014, 65(8): 2119-2135
+
|10.1104/pp.107.101295
 +
|
 +
|Finished
 
|-
 
|-
−
|''OsPIL11''  
+
|761
−
|[[Os12g0610200]]
+
|''OsNAC10''
−
|LOC_Os12g41650
+
|[[Os11g0126900]]
−
|Yuko NAKAMURA;Takahiko KATO;Takafumi YAMASHINO;Masaya MURAKAMI;Takeshi MIZUNO Characterization of a Set of Phytochrome-Interacting Factor-Like bHLH Proteins in Oryza sativa Bioscience, Biotechnology, and Biochemistry, 2007, 71(5): 1183-1191
+
|10.1104/pp.110.154773
 +
|
 +
|Finished
 
|-
 
|-
−
|''OsCam3''  
+
|762
−
|[[Os12g0603800]]
+
|''ONAC045''
−
|LOC_Os12g41110
+
|[[Os11g0127600]]
−
|Aumnart Chinpongpanich;Nuchanat Wutipraditkul;Sarut Thairat;Teerapong Buaboocha Biophysical characterization of calmodulin and calmodulin-like proteins from rice, Oryza sativa L. Acta Biochimica et Biophysica Sinica, 2011, 43(11): 867-876
+
|10.1016/j.bbrc.2008.12.163
 +
|
 +
|Finished
 
|-
 
|-
−
|''OsbZIP88''  
+
|763
−
|[[Os12g0601800]]
+
|''RCN1''
−
|LOC_Os12g40920
+
|[[Os11g0152500]]
−
|Qian Ji;Liang-sheng Zhang;Yi-fei Wang;Jian Wang Genome-wide analysis of basic leucine zipper transcription factor families in Arabidopsis thaliana, Oryza sativa and Populus trichocarpa Journal of Shanghai University (English Edition), 2009, 13(2): 174-182
+
|10.1046/j.1365-313X.2002.01255.x
 +
|  
 +
|Annotated
 
|-
 
|-
−
|''OsIAA3''  
+
|764
−
|[[Os12g0601400]]
+
|''OsAsr1''
−
|LOC_Os12g40900
+
|[[Os11g0167800]]
−
|Mukesh Jain;Navneet Kaur;Rohini Garg;Jitendra K. Thakur;Akhilesh K. Tyagi;Jitendra P. Khurana Structure and expression analysis of early auxin-responsive Aux/IAA gene family in rice (Oryza sativa) Functional & Integrative Genomics, 2006, 6(1): 47-59
+
|10.1007/s10059-009-0055-6
 +
|
 +
|Annotated
 
|-
 
|-
−
|''OsWRKY83''  
+
|765-1
−
|[[Os12g0597700]]
+
|''OsPR4a''
−
|LOC_Os12g40570
+
|[[Os11g0592200]]
−
|Christian A. Ross;Yue Liu;Qingxi J. Shen The WRKY Gene Family in Rice (Oryza sativa) Journal of Integrative Plant Biology, 2007, 49(6): 827-842
+
|10.1016/j.jplph.2011.07.013
 +
|
 +
|Finished
 
|-
 
|-
−
|''OsUAH''  
+
|765-2
−
|[[Os12g0597500]]
+
|''OsPR4b''
−
|LOC_Os12g40550
+
|[[Os11g0592100]]
−
|Juan Li;Rui-Ying Qin;Hao Li;Rong-Fang Xu;Ya-Chun Yang;Da-Hu Ni;Hui Ma;Li Li;Peng-Cheng Wei;Jian-Bo Yang Low-Temperature-Induced Expression of Rice Ureidoglycolate Amidohydrolase is Mediated by a C-Repeat/Dehydration Responsive Element that Specifically Interacts with Rice C-Repeat-Binding Factor 3 Frontiers in Plant Science, 2015, 6: 1011
+
|10.1016/j.jplph.2011.07.013
 +
|  
 +
|Finished
 
|-
 
|-
−
|''OsCBL2''  
+
|765-3
−
|[[Os12g0597000]]
+
|''OsPR4c''
−
|LOC_Os12g40510
+
|[[Os11g0592000]]
−
|Yong-sic Hwang;Paul C. Bethke;Yong Hwa Cheong;Hur-Song Chang;Tong Zhu;Russell L. Jones A Gibberellin-Regulated Calcineurin B in Rice Localizes to the Tonoplast and Is Implicated in Vacuole Function Plant Physiology, 2005, 138(3): 1347-1358
+
|10.1016/j.jplph.2011.07.013
 +
|
 +
|Finished
 
|-
 
|-
−
|''HSA1a''  
+
|765-4
−
|[[Os12g0589400]]
+
|''OsPR4d''
−
|LOC_Os12g39880
+
|[[Os11g0591800]]
−
|Takahiko Kubo;Tomonori Takashi;Motoyuki Ashikari;Atsushi Yoshimura;Nori Kurata Two Tightly Linked Genes at the hsa1 Locus Cause Both F1 and F2 Hybrid Sterility in Rice Molecular Plant, 2016, 9(2): 221-232
+
|10.1016/j.jplph.2011.07.013
 +
|
 +
|Finished
 
|-
 
|-
−
|''OsNAAT6''
+
|765-5
−
|[[Os12g0588900]]
+
|''OsPR4e''
−
|LOC_Os12g39840
+
|[[Os11g0592200]]
−
|Haruhiko Inoue;Michiko Takahashi;Takanori Kobayashi;Motofumi Suzuki;Hiromi Nakanishi;Satoshi Mori;Naoko K. Nishizawa Identification and localisation of the rice nicotianamine aminotransferase gene OsNAAT1 expression suggests the site of phytosiderophore synthesis in rice Plant Molecular Biology, 2008, 66(1-2): 193-203
+
|10.1016/j.jplph.2011.07.013
 +
|
 +
|Finished
 
|-
 
|-
−
|''CycD5;2''
+
|766
−
|[[Os12g0588800]]
+
|''OsMT1a''
−
|LOC_Os12g39830
+
|[[Os11g0704500]]
−
|Honggui La;Jun Li;Zhendong Ji;Yanjun Cheng;Xiuli Li;Shuye Jiang;Prasanna Nori Venkatesh;Srinivasan Ramachandran Genome-wide analysis of cyclin family in rice (Oryza Sativa L.) Molecular Genetics and Genomics, 2006, 275(4): 374-386
+
|10.1007/s11103-009-9466-1
 +
|  
 +
|Finished
 
|-
 
|-
−
|''OsSAPK9''
+
|767
−
|[[Os12g0586100]]
+
|''OsWAK1''
−
|LOC_Os12g39630
+
|[[Os11g0690066]]
−
|Mei-Rong Xu;Li-Yu Huang;Fan Zhang;Ling-Hua Zhu;Yong-Li Zhou;Zhi-Kang Li Genome-Wide Phylogenetic Analysis of Stress-Activated Protein Kinase Genes in Rice (OsSAPKs) and Expression Profiling in Response to Xanthomonas oryzae pv. oryzicola Infection Plant Molecular Biology Reporter, 2013, 31(4): 877-885
+
|10.1007/s11103-008-9430-5
 +
|
 +
|Annotated
 
|-
 
|-
 +
|768
 
|''ZFP252''
 
|''ZFP252''
 
|[[Os12g0583700]]
 
|[[Os12g0583700]]
−
|LOC_Os12g39400
+
|10.1016/j.febslet.2008.02.052
−
|Dong-Qing Xu;Ji Huang;Shu-Qiao Guo;Xia Yang;Yong-Mei Bao;Hai-Juan Tang;Hong-Sheng Zhang Overexpression of a TFIIIA-type zinc finger protein gene ZFP252 enhances drought and salt tolerance in rice (Oryza sativa L.) FEBS Letters, 2008, 582(7): 1037-1043
+
|
 +
|Finished
 +
|-
 +
|769
 +
|''OsPID''
 +
|[[Os12g0614600]]
 +
|10.1093/pcp/pcm024
 +
|
 +
|Finished
 +
|-
 +
|771
 +
|''OsTLP27''
 +
|[[Os01g0102300]]
 +
|10.1016/j.plantsci.2012.06.006
 +
|
 +
|Finished
 +
|-
 +
|772
 +
|''OsHsp17.0''
 +
|[[Os01g0136200]]
 +
|10.1016/j.jplph.2011.12.014
 +
|
 +
|Finished
 +
|-
 +
|775
 +
|''OsMKK6''
 +
|[[Os01g0510100]]
 +
|10.1016/j.jplph.2011.11.012
 +
|
 +
|Finished
 +
|-
 +
|776
 +
|''OsRDR6''
 +
|[[Os01g0527600]]
 +
|10.1111/j.1365-313X.2012.05001.x
 +
|
 +
|Finished
 
|-
 
|-
−
|''CycA3;2''
+
|777
−
|[[Os12g0581800]]
+
|''RAD51C''
−
|LOC_Os12g39210
+
|[[Os01g0578000]]
−
|Honggui La;Jun Li;Zhendong Ji;Yanjun Cheng;Xiuli Li;Shuye Jiang;Prasanna Nori Venkatesh;Srinivasan Ramachandran Genome-wide analysis of cyclin family in rice (Oryza Sativa L.) Molecular Genetics and Genomics, 2006, 275(4): 374-386
+
|10.1093/jxb/ers190
 +
|
 +
|Finished
 
|-
 
|-
−
|''ZOS12-7''
+
|779
−
|[[Os12g0578800]]
+
|''CFO1''
−
|LOC_Os12g38960
+
|[[Os01g0726400]]
−
|Duarte D. Figueiredo;Pedro M. Barros;André M. Cordeiro;Tânia S. Serra;Tiago Lourenço;Subhash Chander;M. Margarida Oliveira;Nelson J. M. Saibo Seven zinc-finger transcription factors are novel regulators of the stress responsive gene OsDREB1B Journal of Experimental Botany, 2012, 63(10): 3643-3656
+
|10.1104/pp.112.200980
 +
|
 +
|Finished
 
|-
 
|-
−
|''OsMYB91''
+
|780
−
|[[Os12g0572000]]
+
|''OsPAP10a''
−
|LOC_Os12g38400
+
|[[Os01g0776600]]
−
| Ning Zhu;Saifeng Cheng;Xiaoyun Liu;Hao Du;Mingqiu Dai;Dao-Xiu Zhou;Wenjing Yang;Yu Zhao The R2R3-type MYB gene OsMYB91 has a function in coordinating plant growth and salt stress tolerance in rice Plant Science, 2015, 236: 146-156
+
|10.1111/j.1744-7909.2012.01143.x
 +
|
 +
|Finished
 
|-
 
|-
−
|''Spl11''
+
|782
−
|[[Os12g0570000]]
+
|''OsCOI1''
−
|LOC_Os12g38210
+
|[[Os01g0853400]]
−
|Jinling Liu;Chan Ho Park;Feng He;Minoru Nagano;Mo Wang;Maria Bellizzi;Kai Zhang;Xiaoshan Zeng;Wende Liu;Yuese Ning;Yoji Kawano;Guo-Liang Wang The RhoGAP SPIN6 Associates with SPL11 and OsRac1 and Negatively Regulates Programmed Cell Death and Innate Immunity in Rice PLoS Pathogens, 2015, 11(2): e1004629
+
|10.1371/journal.pone.0036214
 +
|
 +
|Finished
 +
|-
 +
|783
 +
|''OsMGT1''
 +
|[[Os01g0869200]]
 +
|10.1104/pp.112.199778
 +
|
 +
|Finished
 +
|-
 +
|784
 +
|''PsbS''
 +
|[[Os01g0869800]]
 +
|10.1111/j.1365-313X.2012.04995.x
 +
|
 +
|Finished
 +
|-
 +
|785
 +
|''OsHPL3''
 +
|[[Os02g0110200]]
 +
|10.1111/j.1365-313X.2012.05027.x
 +
|
 +
|Finished
 +
|-
 +
|786
 +
|''MADS29''
 +
|[[Os02g0170300]]
 +
|10.1105/tpc.111.094854
 +
|
 +
|Finished
 +
|-
 +
|787
 +
|''MTR1''
 +
|[[Os02g0491300]]
 +
|10.1016/j.devcel.2012.04.011
 +
|
 +
|Finished
 +
|-
 +
|788
 +
|''cry1a''
 +
|[[Os02g0573200]]
 +
|10.1093/pcp/pcs097
 +
|
 +
|Finished
 +
|-
 +
|788-2
 +
|''cry1b''
 +
|[[Os04g0452100]]
 +
|10.1093/pcp/pcs097
 +
|
 +
|Finished
 +
|-
 +
|789
 +
|''OsABC1-2''
 +
|[[Os02g0575500]]
 +
|10.1016/j.gene.2012.02.017
 +
|
 +
|Finished
 +
|-
 +
|791
 +
|''OsHk6''
 +
|[[Os02g0738400]]
 +
|10.1093/pcp/pcs079
 +
|
 +
|Finished
 +
|-
 +
|1227
 +
|''OsHk3''
 +
|[[Os01g0923700]]
 +
|10.1093/pcp/pcs079
 +
|
 +
|Finished
 +
|-
 +
|1228
 +
|''OsHk4''
 +
|[[Os03g0717700]]
 +
|10.1093/pcp/pcs079
 +
|
 +
|Finished
 +
|-
 +
|792
 +
|''D50''
 +
|[[Os02g0477700]]
 +
|10.1111/j.1365-3040.2012.02534.x
 +
|
 +
|Finished
 +
|-
 +
|793
 +
|''th1''
 +
|[[Os02g0811000]]
 +
|10.1007/s11103-011-9868-8
 +
|Annotated
 +
|
 +
|-
 +
|794
 +
|''osdrm2''
 +
|[[Os03g0110800]]
 +
|10.1111/j.1365-313X.2012.04974.x
 +
| Targeted disruption of an orthologue of DOMAINS REARRANGED METHYLASE 2, OsDRM2, impairs the growth of rice plants by abnormal DNA methylation
 +
|
 +
|-
 +
|795
 +
|''te''
 +
|[[Os03g0123300]]
 +
|10.1038/ncomms1716
 +
|
 +
|Finished
 +
|-
 +
|796
 +
|''OsMYB2''
 +
|[[Os03g0315400]]
 +
|10.1093/jxb/err431
 +
|The rice Os03g0315400 was reported as OsMYB2 in 2012 [1] by researchers from China.
 +
|
 +
|-
 +
|797
 +
|''OsCam1-1''
 +
|[[Os03g0319300]]
 +
|10.1007/s12374-011-0154-8
 +
| The rice Os03g0319300 was reported as OsCam1-1 in 2012 [1] by researchers from Thailand.
 +
|
 +
|-
 +
|798
 +
|''OsLEA3-2''
 +
|[[Os03g0322900]]
 +
|10.1371/journal.pone.0045117
 +
| OsLEA3-2, an Abiotic Stress Induced Gene of Rice Plays a Key Role in Salt and Drought Tolerance
 +
|
 +
|-
 +
|800
 +
|''ysa''
 +
|[[Os03g0597200]]
 +
|10.1104/pp.112.195081
 +
|
 +
|Disruption of a Rice Pentatricopeptide Repeat Protein Causes a Seedling-Specific Albino Phenotype and Its Utilization to Enhance Seed Purity in Hybrid Rice Production
 +
|-
 +
|801
 +
|''OsSh1''
 +
|[[Os03g0650000]]
 +
|10.1038/ng.2281
 +
| Parallel domestication of the Shattering1 genes in cereals
 +
|
 +
|-
 +
|802
 +
|''OsSWAP70A''
 +
|[[Os03g0666200]]
 +
|10.1111/j.1365-313X.2011.04874.x
 +
|Annotated
 +
|
 +
|-
 +
|803
 +
|''OsDDM1b''
 +
|[[Os03g0722400]]
 +
|10.1007/s00438-012-0717-5
 +
| DDM1 (Decrease in DNA Methylation) genes in rice (Oryza sativa)
 +
|
 +
|-
 +
|804
 +
|''OsDDM1a''
 +
|[[Os09g0442700]]
 +
|10.1007/s00438-012-0717-5
 +
| DDM1 (Decrease in DNA Methylation) genes in rice (Oryza sativa)
 +
|
 +
|-
 +
|806
 +
|''OsPIL1''
 +
|[[Os03g0782500]]
 +
|10.1073/pnas.1207324109
 +
|Annotated
 +
|
 +
|-
 +
|807
 +
|''gh1''
 +
|[[Os03g0819600]]
 +
|10.1007/s00425-012-1598-x
 +
| A mutation in the rice chalcone isomerase gene causes the golden hull and internode 1 phenotype
 +
|
 +
|-
 +
|808
 +
|''OsPT1''
 +
|[[Os03g0150600]]
 +
|10.1104/pp.112.196345
 +
|A Constitutive Expressed Phosphate Transporter, OsPht1;1, Modulates Phosphate Uptake and Translocation in Phosphate-Replete Rice
 +
|
 +
|-
 +
|810
 +
|''OsVIT1''
 +
|[[Os04g0463400]]
 +
|10.1111/j.1365-313X.2012.05088.x
 +
| Annotated
 +
|
 +
|-
 +
|811
 +
|''YSL16''
 +
|[[Os04g0542800]]
 +
|10.1105/tpc.112.103820
 +
| Annotated
 +
|
 +
|-
 +
|812
 +
|''cZOGT1''
 +
|[[Os04g0556500]]
 +
|10.1104/pp.112.196733
 +
| Cytokinin Activity of cis-Zeatin and Phenotypic Alterations Induced by Overexpression of Putative cis-Zeatin-O-glucosyltransferase in Rice
 +
|-
 +
|813
 +
|''cZOGT2''
 +
|[[Os04g0556600]]
 +
|10.1104/pp.112.196733
 +
|Cytokinin Activity of cis-Zeatin and Phenotypic Alterations Induced by Overexpression of Putative cis-Zeatin-O-glucosyltransferase in Rice 
 +
|
 +
|-
 +
|1026
 +
|''cZOGT3''
 +
|[[Os04g0565400]]
 +
|10.1104/pp.112.196733
 +
| Cytokinin Activity of cis-Zeatin and Phenotypic Alterations Induced by Overexpression of Putative cis-Zeatin-O-glucosyltransferase in Rice
 +
|
 +
|-
 +
|814
 +
|''xiao''
 +
|[[Os04g0576900]]
 +
|10.1111/j.1365-313X.2011.04877.x
 +
|XIAO is involved in the control of organ size by contributing to the regulation of signaling and homeostasis of brassino steroids and cell cycling in rice
 +
|
 +
|-
 +
|815
 +
|''MPR25''
 +
|[[Os04g0602600]]
 +
|10.1111/j.1365-313X.2012.05091.x
 +
| Annotated
 +
|
 +
|-
 +
|816
 +
|''shat1''
 +
|[[Os04g0649100]]
 +
|10.1105/tpc.111.094383
 +
| Genetic Control of Seed Shattering in Rice by the APETALA2 Transcription Factor SHATTERING ABORTION1
 +
|
 +
|-
 +
|817
 +
|''SLAC1''
 +
|[[Os04g0674700]]
 +
|10.1093/jxb/ers216
 +
| Increased leaf photosynthesis caused by elevated stomatal  conductance in a rice mutant deficient in SLAC1, a guard cell  anion channel protein
 +
|
 +
|-
 +
|819
 +
|''OsMYB2P-1 1''
 +
|[[Os05g0140100]]
 +
|10.1104/pp.112.194217
 +
| OsMYB2P-1, an R2R3 MYB Transcription Factor, Is Involved in the Regulation of Phosphate-Starvation Responses and Root Architecture in Rice
 +
|
 +
|-
 +
|820
 +
|''OsSYP71''
 +
|[[Os05g0553700]]
 +
|10.1016/j.gene.2012.05.011
 +
| Overexpression of the Qc-SNARE gene OsSYP71 enhances tolerance to oxidative stress and resistance to rice blast in rice
 +
|
 +
|-
 +
|821
 +
|''HDT701''
 +
|[[Os05g0597100]]
 +
|10.1105/tpc.112.101972
 +
| HDT701, a Histone H4 Deacetylase, Negatively Regulates Plant Innate Immunity by Modulating Histone H4 Acetylation of Defense-Related Genes in Rice
 +
|
 +
|-
 +
|822
 +
|''OsELF3-1''
 +
|[[Os06g0142600]]
 +
|10.1371/journal.pone.0043705
 +
| Annotated
 +
|
 +
|-
 +
|823
 +
|''Hd17''
 +
|[[Os06g0142600]]
 +
|10.1093/pcp/pcs028
 +
| Natural Variation in Hd17, a Homolog of Arabidopsis ELF3 That is Involved in Rice Photoperiodic Flowering
 +
|-
 +
|825
 +
|''LYP6''
 +
|[[Os06g0208800]]
 +
|10.1105/tpc.112.102475
 +
| Annotated
 +
|
 +
|-
 +
|826
 +
|''OsbZIP46''
 +
|[[Os06g0211200]]
 +
|10.1104/pp.111.190389
 +
| Constitutive Activation of Transcription Factor OsbZIP46 Improves Drought Tolerance in Rice
 +
|
 +
|-
 +
|830
 +
|''RPL1''
 +
|[[Os06g0245600]]
 +
|10.1093/mp/ssr091
 +
| RPL1, a Gene Involved in Epigenetic Processes Regulates Phenotypic Plasticity in Rice
 +
|
 +
|-
 +
|831
 +
|''OsHSBP2''
 +
|[[Os06g0274000]]
 +
|10.1093/jxb/ers245
 +
| Functional analysis of OsHSBP1 and OsHSBP2 revealed
 +
|-
 +
|1027
 +
|''OsHSBP1''
 +
|[[Os09g0375100]]
 +
|10.1093/jxb/ers245
 +
| Functional analysis of OsHSBP1 and OsHSBP2 revealed
 +
|-
 +
|832
 +
|''OsMIOX''
 +
|[[Os06g0561000]]
 +
|10.1016/j.plantsci.2012.08.003
 +
| Annotated
 +
|
 +
|-
 +
|833
 +
|''SE5''
 +
|[[Os06g0603000]]
 +
|10.1007/s11103-012-9945-7
 +
| Annotated
 +
|
 +
|-
 +
|834
 +
|''OsCOM1''
 +
|[[Os06g0613400]]
 +
|10.1111/j.1365-313X.2012.05025.x
 +
| The role of OsCOM1 in homologous chromosome synapsis and recombination in rice meiosis
 +
|
 +
|-
 +
|835
 +
|''OsbZIP52/RISBZ5''
 +
|[[Os06g0662200]]
 +
|10.1007/s00425-011-1564-z
 +
| Annotated
 +
|
 +
|-
 +
|836
 +
|''SRL1''
 +
|[[Os07g0102300]]
 +
|10.1104/pp.112.199968
 +
| Annotated
 +
|
 +
|-
 +
|837
 +
|''MADS15''
 +
|[[Os07g0108900]]
 +
|10.1105/tpc.112.097105
 +
| Annotated
 +
|
 +
|-
 +
|840
 +
|''OsSWAP70B''
 +
|[[Os07g0138100]]
 +
|10.1111/j.1365-313X.2011.04874.x
 +
| SWAP70 functions as a Rac/Rop guanine nucleotide-exchange factor in rice
 +
|
 +
|-
 +
|841
 +
|''spl5''
 +
|[[Os07g0203700]]
 +
|10.1007/s11032-011-9677-4
 +
| SPL5, a cell death and defense-related gene, encodes a putative splicing factor 3b subunit 3 (SF3b3) in rice
 +
|
 +
|-
 +
|842
 +
|''Nramp5''
 +
|[[Os07g0257200]]
 +
|10.1105/tpc.112.096925
 +
| Annotated
 +
|
 +
|-
 +
|843
 +
|''OsCHR4''
 +
|[[Os07g0497000]]
 +
|10.1007/s00425-012-1667-1
 +
| Molecular cloning and characterization of OsCHR4, a rice chromatin-remodeling factor required for early chloroplast development in adaxial mesophyll
 +
|
 +
|-
 +
|844
 +
|''chr729''
 +
|[[Os07g0497100]]
 +
|10.1073/pnas.1203148109
 +
| CHD3 protein recognizes and regulates methylated histone H3 lysines 4 and 27 over a subset of targets in the rice genome
 +
|
 +
|-
 +
|845
 +
|''OSRIP18''
 +
|[[Os07g0556800]]
 +
|10.1007/s11248-011-9568-9
 +
| Annotated
 +
|
 +
|-
 +
|846
 +
|''ObgC''
 +
|[[Os07g0669200]]
 +
|10.1111/j.1365-313X.2012.04976.x
 +
| Functional characterization of ObgC in ribosome biogenesis during chloroplast development
 +
|
 +
|-
 +
|847
 +
|''cslf6''
 +
|[[Os08g0160500]]
 +
|10.1104/pp.112.195495
 +
| Loss of Cellulose Synthase-Like F6 Function Affects Mixed-Linkage Glucan Deposition, Cell Wall Mechanical Properties, and Defense Responses in Vegetative Tissues of Rice
 +
|
 +
|-
 +
|848
 +
|''OsLIS-L1''
 +
|[[Os08g0162100]]
 +
|10.1007/s00425-011-1532-7
 +
| Annotated
 +
|
 +
|-
 +
|851
 +
|''WRKY30''
 +
|[[Os08g0499300]]
 +
|10.1007/s00425-012-1668-0
 +
| Annotated
 +
|
 +
|-
 +
|852
 +
|''Orysa;CDKB2;1''
 +
|[[Os08g0512600]]
 +
|10.1111/j.1365-313X.2011.04847.x
 +
| CDKB2 is involved in mitosis and DNA damage response in rice
 +
|
 +
|-
 +
|853
 +
|''qGW8''
 +
|[[Os08g0531600]]
 +
|10.1038/ng.2327
 +
| Annotated
 +
|
 +
|-
 +
|854
 +
|''SDG724''
 +
|[[Os09g0307800]]
 +
|10.1105/tpc.112.101436
 +
| Annotated
 +
|
 +
|-
 +
|856
 +
|''OsVIT2''
 +
|[[Os09g0396900]]
 +
|10.1111/j.1365-313X.2012.05088.x
 +
| Annotated
 +
|
 +
|-
 +
|857
 +
|''OsDDM1a''
 +
|[[Os09g0442700]]
 +
|10.1007/s00438-012-0717-5
 +
| Annotated
 +
|
 +
|-
 +
|858
 +
|''LYP4''
 +
|[[Os09g0452200]]
 +
|10.1105/tpc.112.102475
 +
| Annotated
 +
|
 +
|-
 +
|859
 +
|''BC15/OsCTL1''
 +
|[[Os09g0494200]]
 +
|10.1104/pp.112.195529
 +
|Annotated
 +
|
 +
|-
 +
|860
 +
|''LGD1''
 +
|[[Os09g0502100]]
 +
|10.1111/j.1365-313X.2012.04989.x
 +
|Annotated
 +
|
 +
|-
 +
|861
 +
|''BSR1''
 +
|[[Os09g0533600]]
 +
|10.1111/j.1467-7652.2010.00568.x
 +
|Screening for resistance against Pseudomonas syringae in rice-FOX Arabidopsis lines identified a putative receptor-like cytoplasmic kinase gene that confers resistance to major bacterial and fungal pathogens in Arabidopsis and rice.
 +
|Resistance
 +
|-
 +
|862
 +
|''OsLDC-like 1''
 +
|[[Os09g0547500]]
 +
|10.1007/s10059-012-0067-5
 +
|Increased Polyamine Biosynthesis Enhances Stress Tolerance by Preventing the Accumulation of Reactive Oxygen Species: T-DNA Mutational Analysis of Oryza sativa Lysine Decarboxylase-like Protein 1
 +
|
 +
|-
 +
|863
 +
|''OsDEES1''
 +
|[[Os09g0561600]]
 +
|10.1104/pp.112.203943
 +
|Annotated
 +
|
 +
|-
 +
|864
 +
|''OsFbx352''
 +
|[[Os10g0127900]]
 +
|10.1093/jxb/ers206
 +
|Annotated
 +
|
 +
|-
 +
|865
 +
|''rl14''
 +
|[[Os10g0558900]]
 +
|10.1111/j.1467-7652.2012.00679.x
 +
|Annotated
 +
|
 +
|-
 +
|866
 +
|''ospk1''
 +
|[[Os11g0148500]]
 +
|10.1007/s11105-011-0386-2
 +
| Downregulation of OsPK1 Contributes to Oxidative Stress and the Variations in ABA/GA Balance in Rice
 +
|
 +
|-
 +
|867
 +
|''MIL2''
 +
|[[Os12g0152500]]
 +
|10.1111/j.1469-8137.2012.04270.x
 +
| MIL2 (MICROSPORELESS2) regulates early cell differentiation in the rice anther
 +
|
 +
|-
 +
|868
 +
|''PSTOL1''
 +
|[[BAK26566]]
 +
|10.1038/nature11346
 +
|
 +
|-
 +
|869
 +
|''p/tms12-1''
 +
|[[smRNA615912]]
 +
|10.1038/cr.2012.28
 +
|
 
|-
 
|-
−
|''OsHSP23.7''
+
|870
 +
|''OsHsp23.7''
 
|[[Os12g0569700]]
 
|[[Os12g0569700]]
−
|LOC_Os12g38180
+
|10.1016/j.jplph.2011.12.014
−
|Jie Zou;Cuifang Liu;Ailing Liu;Dian Zou;Xinbo Chen Overexpression of OsHsp17.0 and OsHsp23.7 enhances drought and salt tolerance in rice Journal of Plant Physiology, 2012, 169(6): 628-635
+
| Annotated
 +
|
 +
|-
 +
|871
 +
|''Amy1A''
 +
|[[Os02g0765600]]
 +
|10.1111/j.1467-7652.2012.00741.x
 +
| Annotated
 +
|Suppression of a-amylase genes improves quality of rice grain ripened under high temperature
 +
|
 +
|-
 +
|872
 +
|''Amy2A''
 +
|[[Os06g0713800]]
 +
|10.1111/j.1467-7652.2012.00741.x
 +
|Suppression of a-amylase genes improves quality of rice grain ripened under high temperature
 +
|
 +
|-
 +
|873
 +
|''Amy3A''
 +
|[[Os09g0457400]]
 +
|10.1111/j.1467-7652.2012.00741.x
 +
|Suppression of a-amylase genes improves quality of rice grain ripened under high temperature
 +
|
 +
|-
 +
|874
 +
|''Amy3B''
 +
|[[Os09g0457600]]
 +
|10.1111/j.1467-7652.2012.00741.x
 +
|Suppression of a-amylase genes improves quality of rice grain ripened under high temperature
 +
|
 +
|-
 +
|1236
 +
|''Amy3C''
 +
|[[Os09g0457800]]
 +
|10.1111/j.1467-7652.2012.00741.x
 +
|Suppression of a-amylase genes improves quality of rice grain ripened under high temperature
 +
|
 +
|-
 +
|1237
 +
|''Amy3D''
 +
|[[Os08g0473900]]
 +
|10.1111/j.1467-7652.2012.00741.x
 +
|Suppression of a-amylase genes improves quality of rice grain ripened under high temperature
 +
|
 +
|-
 +
|1238
 +
|''Amy3E''
 +
|[[Os08g0473600]]
 +
|10.1111/j.1467-7652.2012.00741.x
 +
|Suppression of a-amylase genes improves quality of rice grain ripened under high temperature
 +
|
 +
|-
 +
|875
 +
|''ylc1''
 +
|[[Os09g0380200]]
 +
|10.1007/s00425-012-1756-1
 +
| Young Leaf Chlorosis 1, a chloroplast-localized gene required for chlorophyll and lu
 +
|
 
|-
 
|-
−
|''OsBOR1''
+
|878
−
|[[Os12g0566000]]
+
|''OsIAGLU''
−
|LOC_Os12g37840
+
|[[Os03g0693600]]
−
|Yuko Nakagawa;Hideki Hanaoka;Masaharu Kobayashi;Kazumaru Miyoshi;Kyoko Miwa;Toru Fujiwara Cell-Type Specificity of the Expression of Os BOR1, a Rice Efflux Boron Transporter Gene, Is Regulated in Response to Boron Availability for Efficient Boron Uptake and Xylem Loading The Plant Cell, 2007, 19(8): 2624-2635
+
|10.1007/s12374-012-0238-0
 +
| Tiller Formation in Rice is Altered by Overexpression of OsIAGLU Gene Encoding an IAA-conjugating Enzyme or Exogenous Treatment of Free IAA
 +
|
 
|-
 
|-
−
|''OsOBF1''
+
|879
−
|[[Os12g0560900]]
+
|''OsOAT''
−
|LOC_Os12g37410
+
|[[Os03g0643300]]
−
|Qian Ji;Liang-sheng Zhang;Yi-fei Wang;Jian Wang Genome-wide analysis of basic leucine zipper transcription factor families in Arabidopsis thaliana, Oryza sativa and Populus trichocarpa Journal of Shanghai University (English Edition), 2009, 13(2): 174-182
+
|10.1016/j.plantsci.2012.09.002
 +
| Annotated
 +
|
 
|-
 
|-
−
|''OsSar1b''
+
|1230
−
|[[Os12g0560300]]
+
|''OsAPS1''
−
|LOC_Os12g37360
+
|[[Os09g0298200]]
−
|Lihong Tian;Ling Ling Dai;Zhi Jie Yin;Masako Fukuda;Toshihiro Kumamaru;Xiang Bai Dong;Xiu Ping Xu;Le Qing Qu Small GTPase Sar1 is crucial for proglutelin and α-globulin export from the endoplasmic reticulum in rice endosperm Journal of Experimental Botany, 2013, 64(10): 2831-2845
+
|10.1071/FP12186
 +
| Gene Expression of ADP-glucose Pyrophosphorylase and Starch Contents in Rice Cultured Cells are Cooperatively Regulated by Sucrose and ABA
 +
|
 
|-
 
|-
−
|''OsLOX11''
+
|1231
−
|[[Os12g0559200]]
+
|''OsAPS2''
−
|LOC_Os12g37260
+
|[[Os08g0345800]]
−
|Soma S. Marla;V. K. Singh LOX genes in blast fungus (Magnaporthe grisea) resistance in rice Functional & Integrative Genomics, 2012, 12(2): 265-275
+
|10.1071/FP12186
 +
| Gene Expression of ADP-glucose Pyrophosphorylase and Starch Contents in Rice Cultured Cells are Cooperatively Regulated by Sucrose and ABA
 +
|
 
|-
 
|-
−
|''OsDi19-7''
+
|1232
−
|[[Os12g0556100]]
+
|''OsAGPL1''
−
|LOC_Os12g36900
+
|[[Os03g0735000]]
−
|Lili Wang;Changchun Yu;Cong Chen;Chunlan He;Yingguo Zhu;Wenchao Huang Identification of rice Di19 family reveals OsDi19-4 involved in drought resistance Plant Cell Reports, 2014, 33(12): 2047-2062
+
|10.1071/FP12186
 +
| Gene Expression of ADP-glucose Pyrophosphorylase and Starch Contents in Rice Cultured Cells are Cooperatively Regulated by Sucrose and ABA
 +
|
 
|-
 
|-
−
|''OsPR10a''
+
|1234
−
|[[Os12g0555500]]
+
|''OsAPL3''
−
|LOC_Os12g36880
+
|[[Os05g0580000]]
−
|Changhyun Choi;Seon-Hee Hwang;Il Ran Fang;Soon Il Kwon;Sang Ryeol Park;Ilpyung Ahn;Jung Bong Kim;Duk-Ju Hwang Molecular characterization of Oryza sativa WRKY6, which binds to W-box-like element 1 of the Oryza sativa pathogenesis-related (PR) 10a promoter and confers reduced susceptibility to pathogens New Phytologist, 2015, 208(3): 846-859
+
|10.1071/FP12186
 +
| Gene Expression of ADP-glucose Pyrophosphorylase and Starch Contents in Rice Cultured Cells are Cooperatively Regulated by Sucrose and ABA
 +
|
 
|-
 
|-
−
|''OspPLAIIλ''
+
|1235
−
|[[Os12g0552200]]
+
|''OsAPL4''
−
|LOC_Os12g36610
+
|[[Os07g0243200]]
−
|Guangmeng Liu;Ke Zhang;Jun Ai;Xianjun Deng;Yueyun Hong;Xuemin Wang Patatin-related phospholipase A, pPLAIIIα, modulates the longitudinal growth of vegetative tissues and seeds in rice Journal of Experimental Botany, 2015, 66(21): 6945-6955
+
|10.1071/FP12186
 +
| Gene Expression of ADP-glucose Pyrophosphorylase and Starch Contents in Rice Cultured Cells are Cooperatively Regulated by Sucrose and ABA
 +
|
 
|-
 
|-
−
|''OspPLAIIκ''
+
|881
−
|[[Os12g0551600]]
+
|''OsGH3-2''
−
|LOC_Os12g36530
+
|[[Os01g0764800]]
−
|Guangmeng Liu;Ke Zhang;Jun Ai;Xianjun Deng;Yueyun Hong;Xuemin Wang Patatin-related phospholipase A, pPLAIIIα, modulates the longitudinal growth of vegetative tissues and seeds in rice Journal of Experimental Botany, 2015, 66(21): 6945-6955
+
|10.1093/jxb/ers300
 +
| Annotated
 +
|
 
|-
 
|-
−
|''OsNDPK2''
+
|882
−
|[[Os12g0548300]]
+
|''OsDMI3''
−
|LOC_Os12g36194
+
|[[Os05g0489900]]
−
|Song Mi Cho;Seo Ho Shin;Kwang Sang Kim;Young Cheol Kim;Moo Young Eun;Baik Ho Cho Enhanced Expression of a Gene Encoding a Nucleoside Diphosphate Kinase 1 (OsNDPK1) in Rice Plants upon Infection with Bacterial Pathogens Molecules and Cells, 2004, 18(3): 390-395
+
|10.1093/mp/sss068
 +
|
 +
|Annotated
 
|-
 
|-
−
|''pms3''
+
|883
 +
|''Psi?LDMAR''
 
|[[Os12g0545900]]
 
|[[Os12g0545900]]
−
|LOC_Os12g36030
+
|10.1093/mp/sss095
−
|Hai Zhou;Qinjian Liu;Jing Li;Dagang Jiang;Lingyan Zhou;Ping Wu;Sen Lu;Feng Li;Liya Zhu;Zhenlan Liu;Letian Chen;Yao-Guang Liu;Chuxiong Zhuang Photoperiod- and thermo-sensitive genic male sterility in rice are caused by a point mutation in a novel noncoding RNA that produces a small RNA Cell Research, 2012, 22(4): 649-660
+
| Annotated
 +
|
 
|-
 
|-
−
|''Osrboh9''
+
|884
−
|[[Os12g0541300]]
+
|''OsJAZ8''
−
|LOC_Os12g35610
+
|[[Os09g0439200]]
−
|Dongping Zhang;Li Chen;Dahong Li;Bing Lv;Yun Chen;Jingui Chen;XuejiaoYan;Jiansheng Liang OsRACK1 Is Involved in Abscisic Acid- and H2O2-Mediated Signaling to Regulate Seed Germination in Rice (Oryza sativa, L.) PLoS ONE, 2014, 9(5): e97120
+
|10.1093/pcp/pcs145
 +
| Annotated
 +
|
 
|-
 
|-
−
|''OsGRX29''
+
|885
−
|[[Os12g0538700]]
+
|''Osj10gBTF3''
−
|LOC_Os12g35340
+
|[[Os10g0483000]]
−
|Rohini Garg;Shalu Jhanwar;Akhilesh K. Tyagi;Mukesh Jain Genome-Wide Survey and Expression Analysis Suggest Diverse Roles of Glutaredoxin Gene Family Members During Development and Response to Various Stimuli in Rice DNA Research, 2010, 17(6): 353-367
+
|10.1093/pcp/pcs146
 +
| Inhibition of a Basal Transcription Factor 3-Like Gene Osj10gBTF3 in Rice Results in Significant Plant Miniaturization and Typical Pollen Abortion
 +
|
 
|-
 
|-
−
|''OsGRX28''
+
|886
−
|[[Os12g0538600]]
+
|''LPA1''
−
|LOC_Os12g35330
+
|[[Os03g0237250]]
−
|Rohini Garg;Shalu Jhanwar;Akhilesh K. Tyagi;Mukesh Jain Genome-Wide Survey and Expression Analysis Suggest Diverse Roles of Glutaredoxin Gene Family Members During Development and Response to Various Stimuli in Rice DNA Research, 2010, 17(6): 353-367
+
|10.1104/pp.112.208496
 +
| Annotated
 +
|
 
|-
 
|-
−
|''OsVIL2''
+
|887
−
|[[Os12g0533500]]
+
|''PT11''
−
|LOC_Os12g34850
+
|[[Os01g0657100]]
−
|Jungil Yang;Shinyong Lee;Runlai Hang;Sung-Ryul Kim;Yang-Seok Lee;Xiaofeng Cao;Richard Amasino;Gynheung An OsVIL2 functions with PRC2 to induce flowering by repressing OsLFL1 in rice The Plant Journal, 2013, 73(4): 566-578
+
|10.1105/tpc.112.104901
 +
| Nonredundant Regulation of Rice Arbuscular Mycorrhizal Symbiosis by Two Members of the PHOSPHATE TRANSPORTER1 Gene Family
 +
|
 
|-
 
|-
−
|''TAM1''
+
|888
−
|[[Os12g0520200]]
+
|''PT13''
−
|LOC_Os12g33610
+
|[[ Os04g0186800]]
−
|Bradley W. Tonnessen;Patricia Manosalva;Jillian M. Lang;Marietta Baraoidan;Alicia Bordeos;Ramil Mauleon;James Oard;Scot Hulbert;Hei Leung;Jan E. Leach Rice phenylalanine ammonia-lyase gene OsPAL4 is associated with broad spectrum disease resistance Plant Molecular Biology, 2015, 87(3): 273-286
+
|10.1105/tpc.112.104901
 +
| Nonredundant Regulation of Rice Arbuscular Mycorrhizal Symbiosis by Two Members of the PHOSPHATE TRANSPORTER1 Gene Family
 +
|
 
|-
 
|-
−
|''OsMYB46''
+
|889
−
|[[Os12g0515300]]
+
|''OsMYB55''
−
|LOC_Os12g33070
+
|[[Os05g0553400]]
−
|Ruiqin Zhong;Chanhui Lee;Ryan L. McCarthy;Cromwell K. Reeves;Evan G. Jones;Zheng-Hua Ye Transcriptional Activation of Secondary Wall Biosynthesis by Rice and Maize NAC and MYB Transcription Factors Plant and Cell Physiology, 2011, 52(10): 1856-1871
+
|10.1371/journal.pone.0052030
 +
| Annotated
 +
|
 
|-
 
|-
−
|''SAB23''
+
|890
−
|[[Os12g0514400]]
+
|''DDF1''
−
|LOC_Os12g32980
+
|[[Os06g0138700]]
−
|Young-Su Seo;Mawsheng Chern;Laura E. Bartley;Muho Han;Ki-Hong Jung;Insuk Lee;Harkamal Walia;Todd Richter;Xia Xu;Peijian Cao;Wei Bai;Rajeshwari Ramanan;Fawn Amonpant;Loganathan Arul;Patrick E. Canlas;Randy Ruan;Chang-Jin Park;Xuewei Chen;Sohyun Hwang;Jong-Seong Jeon;Pamela C. Ronald Towards Establishment of a Rice Stress Response Interactome PLoS Genetics, 2011, 7(4): e1002020
+
|10.1111/j.1365-313X.2012.05126.x
 +
|Dwarf and deformed flower 1, encoding an F‐box protein, is critical for vegetative and floral development in rice (Oryza sativa L.)  
 +
|
 
|-
 
|-
−
|''OsYUCCA5''
+
|891
−
|[[Os12g0512000]]
+
|''OsPIN3t''
−
|LOC_Os12g32750
+
|[[Os01g0643300]]
−
|Yuko Yamamoto;Noriko Kamiya;Yoichi Morinaka;Makoto Matsuoka;Takashi Sazuka Auxin Biosynthesis by the YUCCA Genes in Rice Plant Physiology, 2007, 143(3): 1362-1371
+
|10.1111/j.1365-313X.2012.05121.x
 +
| Annotated
 +
|
 
|-
 
|-
 +
|892
 
|''OsbHLH133''
 
|''OsbHLH133''
 
|[[Os12g0508500]]
 
|[[Os12g0508500]]
−
|LOC_Os12g32400
+
|10.1111/j.1365-3040.2012.02569.x
−
|Lu Wang;Yinghui Ying;Reena Narsai;Lingxiao Ye;Luqing Zheng;Jingluan Tian;James Whelan;Huixia Shou Identification of OsbHLH133 as a regulator of iron distribution between roots and shoots in Oryza sativa Plant, Cell & Environment, 2013, 36(1): 224-236
+
| Identification of OsbHLH133 as a regulator of iron distribution between roots and shoots in Oryza sativa
 +
|
 +
|-
 +
|893
 +
|''PGR5''
 +
|[[Os08g0566600]]
 +
|10.1093/pcp/pcs153
 +
| PGR5-Dependent Cyclic Electron Transport Around PSI Contributes to the Redox Homeostasis in Chloroplasts Rather Than CO2 Fixation and Biomass Production in Rice
 +
|
 +
|-
 +
|894
 +
|''OsNRT2.3a''
 +
|[[Os01g0704100]]
 +
|10.1104/pp.112.204461
 +
| Annotated
 +
|
 +
|-
 +
|895
 +
|''bls1''
 +
|[[Os02g0811000]]
 +
|10.1007/s11105-012-0480-0
 +
| BEAK LIKE SPIKELET1 is Required for Lateral Development of Lemma and Palea in Ri
 +
|
 +
|-
 +
|896
 +
|''UIP1''
 +
|[[Os02g0818000]]
 +
|10.1007/s11816-012-0239-y
 +
| Transgenic overexpression of UIP1, an interactor of the 3 0 untranslated region of the Rubisco small subunit mRNA, increases rice tolerance to drought
 +
|
 +
|-
 +
|897
 +
|''OrbHLH001''
 +
|[[Os01g0928000]]
 +
|10.1016/j.jplph.2012.08.019
 +
| Annotated
 +
|
 +
|-
 +
|898
 +
|''CSA''
 +
|[[Os01g0274800]]
 +
|10.1073/pnas.1213041110
 +
|Annotated
 +
|
 +
|-
 +
|899
 +
|''qGL3''
 +
|[[Os03g0646900]]
 +
|10.1073/pnas.1219776110
 +
|Annotated
 +
|
 +
|-
 +
|900
 +
|''OsPPKL2''
 +
|[[Os05g0144400]]
 +
|10.1073/pnas.1219776110
 +
| Rare allele of OsPPKL1 associated with grain length causes extra-large grain and a significant yield increase in rice
 +
|
 +
|-
 +
|901
 +
|''OsPPKL3''
 +
|[[Os12g0617900]]
 +
|10.1073/pnas.1219776110
 +
| Rare allele of OsPPKL1 associated with grain length causes extra-large grain and a significant yield increase in rice
 +
|
 +
|-
 +
|902
 +
|''OsSRO1c''
 +
|[[Os03g0230300]]
 +
|10.1093/jxb/ers349
 +
|
 +
* Annotated
 +
|-
 +
|903
 +
|''OsGT1''
 +
|[[Os01g0262600]]
 +
|10.1104/pp.112.210948
 +
|
 +
* Annotated
 +
|-
 +
|904
 +
|''FIE1''
 +
|[[Os08g0137250]]
 +
|10.1105/tpc.112.102269
 +
|
 +
* Annotated
 +
|-
 +
|905
 +
|''APIP6''
 +
|[[Os05g0154600]]
 +
|10.1105/tpc.112.105429
 +
| The Magnaporthe oryzae Effector AvrPiz-t Targets the RING E3 Ubiquitin Ligase APIP6 to Suppress Pathogen Associated Molecular Pattern–Triggered Immunity in Rice
 +
|
 +
|-
 +
|906
 +
|''BRK1''
 +
|[[Os07g0508500]]
 +
|10.1105/tpc.112.105874
 +
| BRK1, a Bub1-Related Kinase, Is Essential for Generating Proper Tension between Homologous Kinetochores at Metaphase I of Rice Meiosis
 +
|
 +
|-
 +
|907
 +
|''OsARG''
 +
|[[Os04g0106300]]
 +
|10.1111/j.1365-313x.2012.05122.x
 +
|
 +
* Annotated
 +
|-
 +
|908
 +
|''DEC''
 +
|[[Os12g0465700]]
 +
|10.1111/j.1365-313x.2012.05123.x
 +
| Rice DECUSSATE controls phyllotaxy by affecting the cytokinin signaling pathway
 +
|
 +
|-
 +
|909
 +
|''OsIDD10''
 +
|[[Os04g0566400]]
 +
|10.1111/nph.12075
 +
| Regulatory role of indeterminate domain 10 (IDD10) in ammonium-dependent gene expression in rice roots
 +
|
 +
|-
 +
|910
 +
|''OsARF16''
 +
|[[Os06g0196700]]
 +
|10.1111/pce.12001
 +
|
 +
* Annotated
 +
|-
 +
|911
 +
|''OsMADS29''
 +
|[[Os02g0170300]]
 +
|10.1371/journal.pone.0051435
 +
|
 +
|Annotated
 +
|-
 +
|912
 +
|''OsPDCD5''
 +
|[[Os05g0547850]]
 +
|10.1007/s11032-012-9793-9
 +
|
 +
|Annotated
 +
|-
 +
|913
 +
|''OsCDPK1''
 +
|[[Os03g0128700]]
 +
|10.1007/s11103-012-0006-z
 +
|
 +
|Annotated
 +
|-
 +
|914
 +
|''PDA1''
 +
|[[Os06g0607700]]
 +
|10.1007/s12374-013-0902-z
 +
|
 +
|Annotated
 +
|-
 +
|915
 +
|''JMJ703''
 +
|[[Os05g0196500]]
 +
|10.1073/pnas.1217020110
 +
|
 +
|Annotated
 +
|-
 +
|916
 +
|''OsVIL2''
 +
|[[Os02g0152500]]
 +
|10.1111/tpj.12057
 +
| OsVIL2 functions with PRC2 to induce flowering by repressing OsLFL1 in rice
 +
|
 +
|-
 +
|917
 +
|''AIP1''
 +
|[[Os01g0125800]]
 +
|10.1111/tpj.12065
 +
| Oryza sativa actin-interacting protein 1 is required for rice growth by promoting actin turnover
 +
|
 +
|-
 +
|918
 +
|''Xb25''
 +
|[[Os09g0513000]]
 +
|10.1111/tpj.12076
 +
| The XA21 binding protein XB25 is required for maintaining XA21-mediated disease resistance
 +
|
 +
|-
 +
|919
 +
|''DTH2''
 +
|[[Os02g0724000]]
 +
|10.1073/pnas.1213962110
 +
|
 +
|Annotated
 +
|-
 +
|920
 +
|''reg1''
 +
|[[Os03g0786400]]
 +
|10.1073/pnas.1300359110
 +
|
 +
|Annotated
 +
|-
 +
|924
 +
|''fgl''
 +
|[[Os10g0496900]]
 +
|10.1111/tpj.12110
 +
|
 +
|Annotated
 +
|-
 +
|925
 +
|''Ehd4''
 +
|[[Os03g0112700]]
 +
|10.1371/journal.pgen.1003281
 +
|
 +
|Annotated
 +
|-
 +
|926
 +
|''GnTI''
 +
|[[Os02g0833000]]
 +
|10.1111/tpj.12087
 +
| N-glycan maturation is crucial for cytokinin-mediated development and cellulose synthesis in Oryza sativa
 +
|
 +
|-
 +
|927
 +
|''OsFH1''
 +
|[[Os01g0897700]]
 +
|10.1007-s00425-013-1838-8
 +
|
 +
|Annotated
 +
|-
 +
|928
 +
|''moc2''
 +
|[[Os01g0866400]]
 +
|10.5511/plantbiotechnology.12.1210a
 +
| Rice monoculm mutation moc2, which inhibits outgrowth of the second tillers, is ascribed to lack of a fructose-1,6-bisphosphatase
 +
|
 +
|-
 +
|929
 +
|''OsHsfA7''
 +
|[[Os01g0571300]]
 +
|10.5483/BMBRep.2013.46.1.090
 +
|
 +
|Annotated
 +
|-
 +
|930
 +
|''OsPIANK1''
 +
|[[Os11g0182500]]
 +
|10.1371/journal.pone.0059699
 +
| Functional Analysis and Expressional Characterization of Rice Ankyrin Repeat-Containing Protein, OsPIANK1, in Basal Defense against Magnaporthe oryzae Attack
 +
|
 +
|-
 +
|931
 +
|''OsFIE2''
 +
|[[Os08g0137100]]
 +
|10.1371/journal.pgen.1003322
 +
|
 +
|Annotated
 +
|-
 +
|933
 +
|''OsORC3''
 +
|[[Os10g0402200]]
 +
|10.1111/tpj.12126
 +
| OsORC3 is required for lateral root development in rice
 +
|
 +
|-
 +
|934
 +
|''OsAOC''
 +
|[[Os03g0438100]]
 +
|10.1111/tpj.12115
 +
| Identification of rice Allene Oxide Cyclase mutants and the function of jasmonate for defence against Magnaporthe oryzae
 +
|
 +
|-
 +
|935
 +
|''OsSNDP1''
 +
|[[Os10g0122600]]
 +
|10.1007-s11103-013-0033-4
 +
| OsSNDP1, a Sec14-nodulin domain-containing protein, plays a critical role in root hair elongation in rice
 +
|
 +
|-
 +
|936
 +
|''OsRP1L1''
 +
|[[Os05g0365300]]
 +
|10.1007-s11105-012-0537-0
 +
|
 +
|Annotated
 +
|-
 +
|937
 +
|''OsVPS22''
 +
|[[Os09g0529700]]
 +
|10.1007/s11033-012-2422-1
 +
| Knockout of the VPS22 component of the ESCRT-II complex in rice (Oryza sativa L.) causes chalky endosperm and early seedling lethality
 +
|
 +
|-
 +
|938
 +
|''OsTZF1''
 +
|[[Os05g0195200]]
 +
|10.1104/pp.112.205385
 +
|
 +
|Annotated
 +
|-
 +
|939
 +
|''OsAt10''
 +
|[[Os06g0594700]]
 +
|10.1104/pp.112.208694
 +
| Overexpression of a BAHD Acyltransferase, OsAt10, Alters Rice Cell Wall Hydroxycinnamic Acid Content and Saccharification
 +
|
 +
|-
 +
|940
 +
|''Cga1''
 +
|[[Os02g0220400]]
 +
|10.1104/pp.113.217265
 +
|
 +
|Annotated
 +
|-
 +
|941
 +
|''nal2''
 +
|[[Os11g0102100]]
 +
|10.1111/nph.12231
 +
| A WUSCHEL-LIKE HOMEOBOX Gene Represses a YABBY Gene Expression Required for Rice Leaf Development
 +
|
 +
|-
 +
|942
 +
|''nal3''
 +
|[[Os12g0101600]]
 +
|10.1111/nph.12231
 +
|
 +
|Annotated
 +
|-
 +
|943
 +
|''OsPTR9''
 +
|[[Os06g0706400]]
 +
|10.1111/pbi.12031
 +
|
 +
|Annotated
 +
|-
 +
|944
 +
|''OsDHAR1''
 +
|[[Os05g0116100]]
 +
|10.1007/s00425-013-1862-8
 +
| Homologous expression of cytosolic dehydroascorbate reductase increases grain yield and biomass under paddy field conditions in transgenic rice
 +
|
 +
|-
 +
|945
 +
|''ASR1''
 +
|[[Os11g0167800]]
 +
|10.1007/s10059-013-0036-7
 +
|
 +
|Annotated
 +
|-
 +
|946
 +
|''ASR3''
 +
|[[Os02g0543000]]
 +
|10.1007/s10059-013-0036-7
 +
| Abiotic Stress Responsive Rice ASR1 and ASR3 Exhibit Different Tissue-Dependent Sugar and Hormone-Sensitivities
 +
|
 +
|-
 +
|947
 +
|''OsDIL1''
 +
|[[Os10g0148000]]
 +
|10.1007/s11103-013-0057-9
 +
|
 +
|Annotated
 +
|-
 +
|948
 +
|''SLL1''
 +
|[[Os04g0379900]]
 +
|10.1016/j.plantsci.2013.01.003
 +
| SLL1, which encodes a member of the stearoyl-acyl carrier protein fatty acid desaturase family, is involve
 +
|
 +
|-
 +
|949
 +
|''Oscyp71Z2''
 +
|[[Os07g0217600]]
 +
|10.1016/j.plantsci.2013.02.005
 +
| Oscyp71Z2 involves diterpenoid phytoalexin biosynthesis that contributes to bacterial blight resistance in rice
 +
|
 +
|-
 +
|950
 +
|''OsGPX3''
 +
|[[Os02g0664000]]
 +
|10.1016/j.plantsci.2013.03.017
 +
|The mitochondrial glutathione peroxidase GPX3 is essential for H 2 O 2 homeostasis and root and shoot development in rice
 +
|
 +
|-
 +
|951
 +
|''OsGS1;2''
 +
|[[Os03g0223400]]
 +
|10.1093/pcp/pct046
 +
|
 +
|Annotated
 +
|-
 +
|952
 +
|''MSF1''
 +
|[[Os05g0497200]]
 +
|10.1104/pp.113.216044
 +
|Annotated
 +
|
 +
|-
 +
|953
 +
|''CAP1''
 +
|[[Os02g0141300]]
 +
|10.1104/pp.113.216523
 +
|
 +
|Annotated
 +
|-
 +
|954
 +
|''glup6''
 +
|[[Os03g0262900]]
 +
|10.1104/pp.113.217869
 +
|Annotated
 +
|
 +
|-
 +
|955
 +
|''OsGDCH''
 +
|[[Os10g0516100]]
 +
|10.1111/pce.12078
 +
| Knockdown of GDCH gene reveals reactive oxygen species-induced leaf senescence in rice
 +
|
 +
|-
 +
|956
 +
|''RGA4''
 +
|[[Os11g0225100]]
 +
|10.1105/tpc.112.107201
 +
|
 +
|Annotated
 +
|-
 +
|957
 +
|''RGA5''
 +
|[[Os11g0225300]]
 +
|10.1105/tpc.112.10720
 +
| The Rice Resistance Protein Pair RGA4/RGA5 Recognizes the Magnaporthe oryzae Effectors AVR-Pia and AVR1-CO39 by Direct Binding
 +
|
 +
|-
 +
|958
 +
|''LOX3''
 +
|[[Os03g0700400]]
 +
|10.1007/s12374-013-0085-7
 +
| Molecular Genetic Characterization of Rice Seed Lipoxygenase 3 and Assessment of Its Effects on Seed Longevity
 +
|
 +
|-
 +
|959
 +
|''Sar1a''
 +
|[[Os01g0338000]]
 +
|10.1093/jxb/ert128
 +
| Small GTPase Sar1 is crucial for proglutelin and α-globulin export from the endoplasmic reticulum in rice endosperm
 +
|-
 +
|960
 +
|''Sar1b''
 +
|[[Os12g0560300 ]]
 +
|10.1093/jxb/ert128
 +
| Small GTPase Sar1 is crucial for proglutelin and α-globulin export from the endoplasmic reticulum in rice endosperm
 +
|
 +
|-
 +
|961
 +
|''Sar1c''
 +
|[[Os01g0254000]]
 +
|10.1093/jxb/ert128
 +
| Small GTPase Sar1 is crucial for proglutelin and α-globulin export from the endoplasmic reticulum in rice endosperm
 +
|
 +
|-
 +
|961
 +
|''Sar1d''
 +
|[[Os06g0225000]]
 +
|10.1093/jxb/ert128
 +
| Small GTPase Sar1 is crucial for proglutelin and α-globulin export from the endoplasmic reticulum in rice endosperm
 +
|
 +
|-
 +
|962
 +
|''vyl''
 +
|[[Os03g0411500]]
 +
|10.1104/pp.113.217604
 +
|
 +
|Annotated
 +
|-
 +
|963
 +
|''SERF1''
 +
|[[Os05g0420300]]
 +
|10.1105/tpc.113.113068
 +
| SALT-RESPONSIVE ERF1 Regulates Reactive Oxygen Species–Dependent Signaling during the Initial Response to Salt Stress in Rice
 +
|
 +
|-
 +
|964
 +
|''dep''
 +
|[[Os05g0118700]]
 +
|10.1186/1939-8433-5-28
 +
|A WUSCHEL-related homeobox 3B gene, depilous (dep), confers glabrousness of rice leaves and glumes
 +
|
 +
|-
 +
|965
 +
|''LC1''
 +
|[[Os01g0785400]]
 +
|10.1093/mp/sss064
 +
|
 +
|
 +
|-
 +
|966
 +
|''TUD1''
 +
|[[Os03g0232600]]
 +
|10.1371/journal.pgen.1003391
 +
|Annotated
 +
|
 +
|-
 +
|967
 +
|''GL3.1''
 +
|[[Os03g0646900]]
 +
|10.1038/cr.2012.151
 +
| 
 +
|Annotated
 +
|-
 +
|971
 +
|''Oshox22''
 +
|[[Os04g0541700]]
 +
|10.1007/s11103-012-9967-1
 +
|Annotated
 +
|
 +
|-
 +
|972
 +
|''OsLG1''
 +
|[[Os04g0656500]]
 +
|10.1038/ng.2567
 +
| OsLG1 regulates a closed panicle trait in domesticated rice
 +
|
 +
|-
 +
|973
 +
|''OsMSH5''
 +
|[[Os05g0498300]]
 +
|10.1093/mp/sss145
 +
|Annotated
 +
|
 +
|-
 +
|974
 +
|''ABCG15''
 +
|[[Os06g0607700]]
 +
|10.1093/pcp/pcs162
 +
|Annotated
 +
|
 +
|-
 +
|975
 +
|''TGW6''
 +
|[[Os06g0623700]]
 +
|10.1038/ng.2612
 +
|Loss of function of the IAA-glucose hydrolase gene TGW6 enhances rice grain weight and increases yield
 +
|
 +
|-
 +
|976
 +
|''OsFD2''
 +
|[[Os06g0720900]]
 +
|10.1093/pcp/pct005
 +
|  Functional Diversification of FD Transcription Factors in Rice, Components of Florigen Activation Complexes
 +
|Annotated
 +
|-
 +
|127
 +
|''OsFD1''
 +
|[[Os09g0540800]]
 +
|10.1038/nature10272
 +
|  Functional Diversification of FD Transcription Factors in Rice, Components of Florigen Activation Complexes
 +
|-
 +
|977
 +
|''OsDGL1''
 +
|[[Os07g0209000]]
 +
|10.1093/pcp/pcs159
 +
| OsDGL1, a Homolog of an Oligosaccharyltransferase Complex Subunit, is Involved in N-Glycosylation and Root Development in Rice
 +
|
 +
|-
 +
|978
 +
|''Rurm1''
 +
|[[Os07g0466300]]
 +
|10.1093/mp/sst042
 +
|Loss-of-Function of a Ubiquitin-Related Modifier Promotes the Mobilization of the Active MITE mPing
 +
|
 +
|-
 +
|979
 +
|''RSS3''
 +
|[[Os11g0446000]]
 +
|10.1105/tpc.113.112052
 +
|
 +
|Annotated
 +
|-
 +
|980
 +
|''OsRecQl4''
 +
|[[Os04g0433800]]
 +
|10.1093/pcp/pcs155
 +
| DNA replication arrest leads to enhanced homologous recombination and cell death in meristems of rice OsRecQl4 mutants
 +
|
 +
|-
 +
|981
 +
|''OsExo1''
 +
|[[Os01g0777300]]
 +
|10.1093/pcp/pcs155
 +
| Rice exonuclease-1 homologue, OsEXO1, that interacts with DNA polymerase k and RPA subunit proteins, is involved in cell proliferation
 +
|
 +
|-
 +
|982
 +
|''OsIRX10''
 +
|[[Os01g0926700]]
 +
|10.1093/mp/sss135
 +
| Inactivation of OsIRX10 Leads to Decreased Xylan Content in Rice Culm Cell Walls and Improved Biomass Saccharification
 +
|
 +
|-
 +
|983
 +
|''OsCpn60α1''
 +
|[[Os12g0277500]]
 +
|10.1007/s10059-013-2337-2
 +
| OsCpn60α1, Encoding the Plastid Chaperonin 60α Subunit, Is Essential for Folding of rbcL
 +
|
 +
|-
 +
|985
 +
|''Dro1''
 +
|[[Os09g0439800]]
 +
|10.1038/ng.2725
 +
|Annotated
 +
|
 +
|-
 +
|986
 +
|''OsSAG12-1''
 +
|[[Os01g0907600]]
 +
|10.1007/s12038-013-9334-7
 +
| Down-regulation of OsSAG12-1 results in enhanced senescence and pathogen-induced cell death in transgenic rice plants
 +
|
 +
|-
 +
|987
 +
|''BGL11(t)''
 +
|[[Os11g0592900]]
 +
|10.1007/s13258-013-0094-4
 +
| Identification and characterization of BGL11(t), a novel gene regulating leaf-color mutation in rice (Oryza sativa L.)
 +
|
 +
|-
 +
|990
 +
|''OsDET1''
 +
|[[Os01g0104600]]
 +
|10.1016/j.plantsci.2013.06.003
 +
| Mutation of OsDET1 increases chlorophyll content in rice
 +
|
 +
|-
 +
|991
 +
|''OsVHA-A''
 +
|[[Os06g0662000]]
 +
|10.1371/journal.pone.0069046
 +
|Annotated
 +
|
 +
|-
 +
|992
 +
|''TIFY11b''
 +
|[[Os03g0181100]]
 +
|10.1271/bbb.120545
 +
| Overexpression of a Rice TIFY Gene Increases Grain Size through Enhanced Accumulation of Carbohydrates in the Stem
 +
|
 +
|-
 +
|994
 +
|''GE''
 +
|[[Os07g0603700]]
 +
|10.1111/tpj.12223
 +
| GIANT EMBRYO encodes CYP78A13, required for proper size balance between embryo and endosperm in rice
 +
|
 +
|-
 +
|999
 +
|''OsAP65''
 +
|[[Os07g0592200]]
 +
|10.1093/jxb/ert173
 +
| OsAP65, a rice aspartic protease, is essential for male fertility and plays a role in pollen germination and pollen tube growth
 +
|
 +
|-
 +
|1000
 +
|''OsbZIP58''
 +
|[[Os07g0182000]]
 +
|10.1093/jxb/ert187
 +
| OsbZIP58, a basic leucine zipper transcription factor, regulates starch biosynthesis in rice endosperm
 +
|
 +
|-
 +
|1001
 +
|''YGL138(t)''
 +
|[[Os11g0153600]]
 +
|10.1186/1939-8433-6-7
 +
| YGL138(t), encoding a putative signal recognition
 +
particle 54 kDa protein, is involved in chloroplast
 +
development of rice
 +
|Development
 +
|-
 +
|1003
 +
|''OsGA20ox3''
 +
|[[Os07g0169700]]
 +
|10.1094/MPMI-05-12-0138-R
 +
| Gibberellin 20-Oxidase Gene OsGA20ox3 Regulates
 +
Plant Stature and Disease Development in Rice
 +
|Stress
 +
|-
 +
|1004
 +
|''Hd16''
 +
|[[Os03g0793500]]
 +
|10.1111/tpj.12268
 +
|
 +
|Annotated
 +
|-
 +
|1005
 +
|''Bh4''
 +
|[[Os04g0460200]]
 +
|10.1104/pp.110.168500
 +
| Genetic Control of a Transition from Black to Straw-White Seed Hull in Rice Domestication
 +
|Development
 +
|-
 +
|1006
 +
|''OsSUV3''
 +
|[[Os03g0746500]]
 +
|10.1111/tpj.12277
 +
|
 +
|Annotated
 +
|-
 +
|1007
 +
|''OsMPS''
 +
|[[Os02g0618400]]
 +
|10.1111/tpj.12286
 +
|
 +
|Annotated
 +
|-
 +
|1008
 +
|''OsCDT3''
 +
|[[Os01g0178300]]
 +
|10.1111/tpj.12296
 +
|A plasma membrane-localized small peptide is involved in rice aluminum tolerance
 +
|Stress
 +
|-
 +
|1009
 +
|''CRC1''
 +
|[[Os04g0479000]]
 +
|10.1105/tpc.113.113175
 +
| CENTRAL REGION COMPONENT1, a Novel Synaptonemal Complex Component, Is Essential for Meiotic Recombination Initiation in Rice
 +
|Development
 +
|-
 +
|1010
 +
|''ASL1''
 +
|[[Os01g0678600]]
 +
|10.1534/g3.113.007856
 +
|Disruption of the Rice Plastid Ribosomal Protein S20 Leads to Chloroplast Developmental Defects and Seedling Lethality
 +
|Development
 +
|-
 +
|1011
 +
|''OsNAP''
 +
|[[Os03g0327800]]
 +
|10.1186/1471-2229-13-132
 +
|
 +
|Annotated
 +
|-
 +
|1012
 +
|''GS6''
 +
|[[Os06g0127800]]
 +
|10.1111/jipb.12062
 +
|
 +
|Annotated
 +
|-
 +
|1013
 +
|''OsHOS1''
 +
|[[Os03g0737200]]
 +
|10.1007/s11103-013-0092-6
 +
| Isolation and characterization of rice (Oryza sativa L.) E3-ubiquitin ligase OsHOS1 gene in the modulation of cold stress response
 +
|Stress
 +
|-
 +
|1014
 +
|''SGRL''
 +
|[[Os04g0692600]]
 +
|10.1016/j.jplph.2013.05.016
 +
|
 +
|The Stay-Green Rice like (SGRL) gene regulates chlorophyll degradation in rice
 +
|-
 +
|1017
 +
|''An-1''
 +
|[[Os04g0350700]]
 +
|10.1105/tpc.113.113589
 +
|
 +
|Annotated
 +
|-
 +
|1018
 +
|''OslecRK''
 +
|[[Os04g0201900]]
 +
|10.1111/tpj.12328
 +
|
 +
|A rice lectin receptor-like kinase that is involved in innateimmune responses also contributes to seed germination
 +
|-
 +
|1020
 +
|''OsVOZ2''
 +
|[[Os05g0515700]]
 +
|10.1371/journal.pone.0073346
 +
|Xanthomonas oryzae pv. oryzae Type III Effector XopN Targets OsVOZ2 and a Putative Thiamine Synthase as a Virulence Factor in Rice
 +
|Stress
 +
|-
 +
|1021
 +
|''OsHsfB2b''
 +
|[[Os08g0546800]]
 +
|10.1007/s00299-013-1492-4
 +
|
 +
|Annotated
 +
|-
 +
|1022
 +
|''OsGRX8''
 +
|[[Os02g0512400]]
 +
|10.1007/s00425-013-1940-y
 +
|Modified expression of an auxin‐responsive rice CC‐type glutaredoxin gene affects multiple abiotic stress responses
 +
| stress
 +
|-
 +
|1023
 +
|''DAO''
 +
|[[Os04g0475600]]
 +
|10.1016/j.devcel.2013.09.005
 +
|
 +
|Annotated
 +
|-
 +
|1024
 +
|''OsHMA5''
 +
|[[Os04g0556000]]
 +
|10.1104/pp.113.226225
 +
|A Member of the Heavy Metal P-Type ATPase OsHMA5 Is Involved in Xylem Loading of Copper in Rice
 +
|Stress
 +
|-
 +
|1025
 +
|''Osoxo4''
 +
|[[Os03g0693700]]
 +
|10.1111/mpp.12055
 +
|
 +
|Rice oxalate oxidase gene driven by green tissue-specific promoter increases tolerance to sheath blight pathogen (Rhizoctonia solani) in transgenic rice
 +
|-
 +
|1026
 +
|''OsSTN8''
 +
|[[Os05g0480000]]
 +
|10.1111/tpj.12331
 +
|
 +
|Loss-of-function of OsSTN8 suppresses the photosystem II core protein phosphorylation and interferes with the photosystem II repair mechanism in rice
 +
|-
 +
|1027
 +
|''OsEXPA8''
 +
|[[Os01g0248900]]
 +
|10.1371/journal.pone.0075997
 +
|
 +
|Overexpression of OsEXPA8, a root-specific gene, improves rice growth and root system architecture  by facilitating cell extension
 +
|-
 +
|1028
 +
|''OsPRR37''
 +
|[[Os07g0695100]]
 +
|10.1093/mp/sst088
 +
|
 +
|Natural Variation in OsPRR37 Regulates Heading Date and Contributes to Rice Cultivation at a Wide Range of Latitudes
 +
|-
 +
|1029
 +
|''OsMADS57''
 +
|[[Os02g0731200]]
 +
|10.1038/ncomms2542
 +
|
 +
|Annotated
 +
|-
 +
|1030
 +
|''DWA1''
 +
|[[Os04g0473900]]
 +
|10.1073/pnas.1316412110
 +
|
 +
|Annotated
 +
|-
 +
|1031
 +
|''gpa2''
 +
|[[Os03g0262900]]
 +
|10.1093/mp/sst081
 +
|
 +
|Annotated
 +
|-
 +
|1032
 +
|''MHZ7/OsEIN2''
 +
|[[Os07g0155600]]
 +
|10.1093/mp/sst087
 +
|
 +
|Annotated
 +
|-
 +
|1033
 +
|''YGL2''
 +
|[[Os06g0603000]]
 +
|10.1007/s00299-013-1498-y
 +
|
 +
|Annotated
 +
|-
 +
|1034
 +
|''OsMTP8.1''
 +
|[[Os03g0226400]]
 +
|10.1093/jxb/ert243
 +
|Mn tolerance in rice is mediated by MTP8.1, a member of the cation diffusion facilitator family
 +
|
 +
|-
 +
|1035
 +
|''this1''
 +
|[[Os01g0751600]]
 +
|10.1093/jxb/ert256
 +
| THIS1 is a putative lipase that regulates tillering, plant height, and spikelet fertility in rice
 +
|
 +
|-
 +
|1036
 +
|''OsABCG15''
 +
|[[Os06g0607700]]
 +
|10.1111/jipb.12053
 +
|
 +
|The ATP‐binding Cassette Transporter OsABCG15 is Required for Anther Development and Pollen Fertility in Rice
 +
|-
 +
|1037
 +
|''OsRRMh''
 +
|[[Os09g0516300]]
 +
|10.1111/jipb.12056
 +
| OsRRMh, a Spen-like gene, plays an important role during the vegetative to reproductive transition in rice.
 +
|
 +
|-
 +
|1038
 +
|''OsCTR2''
 +
|[[Os02g0527600]]
 +
|10.1093/jxb/ert272
 +
| Rice CONSTITUTIVE TRIPLE-RESPONSE2 is involved in  the ethylene-receptor signalling and regulation of various  aspects of rice growth and development
 +
|
 +
|-
 +
|1039
 +
|''OsbZIP71''
 +
|[[Os09g0306400]]
 +
|10.1007/s11103-013-0115-3
 +
|
 +
|Annotated
 +
|-
 +
|1040
 +
|''OsHox33''
 +
|[[Os12g0612700]]
 +
|10.1007/s11427-013-4565-2
 +
|Knockdown of OsHox33, a member of the class III homeodomain-leucine zipper gene family, accelerates leaf senescence in rice
 +
|
 +
|-
 +
|1041
 +
|''OsGAPDHB''
 +
|[[Os03g0129300]]
 +
|10.1016/j.plantsci.2013.09.010
 +
|A proteomic study of rice cultivar TNG67 and its high aroma mutant SA0420.
 +
|
 +
|-
 +
|1042
 +
|''OsAPX7''
 +
|[[Os04g0434800]]
 +
|10.1016/j.plantsci.2013.10.001
 +
| The knockdown of chloroplastic ascorbate peroxidases reveals its regulatory role in the photosynthesis and protection under photo-oxidative stress in rice
 +
|
 +
|-
 +
|1043
 +
|''OsAPX8''
 +
|[[Os02g0553200]]
 +
|10.1016/j.plantsci.2013.10.001
 +
|
 +
|Annotated
 +
|-
 +
|1044
 +
|''OsRNS4''
 +
|[[Os09g0537700]]
 +
|10.1016/j.plantsci.2013.10.003
 +
|
 +
|Annotated
 +
|-
 +
|1045
 +
|''D53''
 +
|[[Os11g0104300]]
 +
|&quot;10.1038/nature12870, 10.1038/nature12878&quot;
 +
|
 +
|Annotated
 +
|-
 +
|1046
 +
|''OsHRZ1''
 +
|[[Os01g0689451]]
 +
|10.1038/ncomms3792
 +
| Iron-binding haemerythrin RING ubiquitin ligases regulate plant iron responses and accumulation
 +
|
 +
|-
 +
|1047
 +
|''OsHRZ2''
 +
|[[Os05g0551000]]
 +
|10.1038/ncomms3792
 +
|Iron-binding haemerythrin RING ubiquitin ligases regulate plant iron responses and accumulation
 +
|
 +
|-
 +
|1048
 +
|''PTB1''
 +
|[[Os05g0145000]]
 +
|10.1038/ncomms3793
 +
| Natural variation in PTB1 regulates rice seed setting rate by controlling pollen tube growth
 +
|
 +
|-
 +
|1050
 +
|''OsBOR4''
 +
|[[Os05g0176800]]
 +
|10.1093/pcp/pct136
 +
|
 +
|Annotated
 +
|-
 +
|1051
 +
|''LYL1''
 +
|[[Os02g0744900]]
 +
|10.1371/journal.pone.0075299
 +
| Mutation of the Light-Induced Yellow Leaf 1 Gene, Which Encodes a Geranylgeranyl Reductase, Affects Chlorophyll Biosynthesis and Light Sensitivity in Rice
 +
|
 +
|-
 +
|1052
 +
|''OsEBS''
 +
|[[Os05g0591400]]
 +
|10.1111/pbi.12097
 +
|Identification and characterization of OsEBS, a gene involved in enhanced plant biomass and spikelet number in rice
 +
|
 +
|-
 +
|1053
 +
|''SOR1''
 +
|[[Os04g0101800]]
 +
|10.1186/1939-8433-6-30
 +
| Isolation of a novel mutant gene for soil-surface rooting in rice (Oryza sativa L.)
 +
|
 +
|-
 +
|1054
 +
|''OsCPK10''
 +
|[[Os03g0788500]]
 +
|10.1016/j.plaphy.2013.10.004
 +
|
 +
|Annotated
 +
|-
 +
|1055
 +
|''JMJ705''
 +
|[[Os01g0907400]]
 +
|10.1105/tpc.113.118802
 +
| Jumonji C Domain Protein JMJ705-Mediated Removal of Histone H3 Lysine 27 Trimethylation Is Involved in Defense-Related Gene Activation in Rice
 +
|Stress
 +
|-
 +
|1056
 +
|''OsCCaMK''
 +
|[[Os05g0489900]]
 +
|10.1128/AEM.03646-13.
 +
| A rice gene for microbial symbiosis, OsCCaMK, reduces CH 4 flux in a paddy field with low nitrogen input
 +
|Stress
 +
|-
 +
|1061
 +
|''LH8''
 +
|[[Os08g0174500]]
 +
|10.1038/srep04263
 +
|
 +
|Annotated
 +
|-
 +
|1063
 +
|''OsTrx1''
 +
|[[Os09g0134500]]
 +
|10.1104/pp.113.228049
 +
| Trithorax group protein Oryza sativa Trithorax1 controls flowering time in rice via interaction with early heading date3
 +
|
 +
|-
 +
|1071
 +
|''RIXI''
 +
|[[Os11g0701800]]
 +
|10.1007/s10658-013-0342-0
 +
| Functional characterization of a new pathogen induced xylanase inhibitor (RIXI) from rice
 +
|
 +
|-
 +
|1072
 +
|''TCD9''
 +
|[[Os09g0563300]]
 +
|10.1016/j.plantsci.2013.11.003
 +
|Importance of the rice TCD9 encoding α subunit of chaperonin protein 60 (Cpn60α) for the chloroplast development during the early leaf stage.
 +
|
 +
|-
 +
|1074
 +
|''OsBURP16''
 +
|[[Os10g0409400]]
 +
|10.1111/pce.12223
 +
| Overexpression of stress-inducible OsBURP16, the β subunit of polygalacturonase 1, decreases pectin content and cell adhesion and increases abiotic stress sensitivity in rice
 +
|
 +
|-
 +
|1075
 +
|''OsDSR2''
 +
|[[Os01g0839200]]
 +
|10.1007/s00299-013-1532-0
 +
|Overexpression of a new stress-repressive gene OsDSR2 encodinga protein with a DUF966 domain increases salt and simulated drought stress sensitivities and reduces ABA sensitivity in rice
 +
|
 +
|-
 +
|1076
 +
|''ssg4''
 +
|[[Os01g0179400]]
 +
|10.1104/pp.113.229591
 +
| Amyloplast-Localized SUBSTANDARD STARCH GRAIN4 Protein Influences the Size of Starch Grains in Rice Endosperm
 +
|
 +
|-
 +
|1080
 +
|''OsAMT1;1''
 +
|[[Os04g0509600]]
 +
|10.1093/jxb/ert458
 +
| AMT1;1 transgenic rice plants with enhanced NH4+ permeability show superior growth and higher yield under optimal and suboptimal NH4+ conditions
 +
|
 +
|-
 +
|1082
 +
|''WLP1''
 +
|[[Os01g0749200]]
 +
|10.1007/s11103-013-0134-0
 +
| The rice nuclear gene WLP1 encoding a chloroplast ribosome L13 protein is needed for chloroplast development in rice grown under low temperature conditions
 +
|
 +
|-
 +
|1083
 +
|''ADH1''
 +
|[[Os11g0210300]]
 +
|10.1093/aob/mct305
 +
|
 +
|Annotated
 +
|-
 +
|1084
 +
|''OsAlba1''
 +
|[[Os01g0173100]]
 +
|10.1016/j.phytochem.2014.01.015
 +
|
 +
|Annotated
 +
|-
 +
|1086
 +
|''OsDCL3a''
 +
|[[Os01g0909200]]
 +
|10.1073/pnas.1318131111
 +
|
 +
|Annotated
 +
|-
 +
|1087
 +
|''SGL''
 +
|[[Os05g0154700]]
 +
|10.1007/s00299-013-1524-0
 +
|
 +
|Annotated
 +
|-
 +
|1088
 +
|''OsHI-XIP''
 +
|[[Os05g0247100]]
 +
|10.1007/s11105-013-0661-5
 +
| Overexpression of a Xylanase Inhibitor Gene, OsHI-XIP, Enhances Resistance in Rice to Herbivore
 +
|
 +
|-
 +
|1089
 +
|''OsZHD1''
 +
|[[Os09g0466400]]
 +
|10.1007/s00425-013-2009-7
 +
|
 +
|Annotated
 +
|-
 +
|1090
 +
|''CYP96B4''
 +
|[[Os03g0140400]]
 +
|10.1371/journal.pone.0088068
 +
|  The rice semi-dwarf mutant sd37, caused by a mutation in CYP96B4, plays an important role in the fine-tuning of plant growth.
 +
|
 +
|-
 +
|1092
 +
|''FLO6''
 +
|[[Os03g0686900]]
 +
|10.1111/tpj.12444
 +
| FLOURY ENDOSPERM6 encodes a CBM48 domain-containing protein involved in compound granule formation and starch synthesis in rice endosperm
 +
|
 +
|-
 +
|1093
 +
|''OsKS2''
 +
|[[Os04g0612000]]
 +
|10.1111/plb.12069
 +
|
 +
|Annotated
 +
|-
 +
|1094
 +
|''OsDG2''
 +
|[[Os02g0606000]]
 +
| 10.1007/s00299-013-1549-4
 +
| The rice OsDG2 encoding a glycine-rich protein is involved in the regulation of chloroplast development during early seedling stage
 +
|
 +
|-
 +
|1095
 +
|''Hwi2''
 +
|[[Os01g0795400]]
 +
|10.1038/ncomms4357
 +
|
 +
|A two-locus interaction causes interspecific hybrid weakness in rice
 +
|-
 +
|1222
 +
|''Hwi1''
 +
|[[Os11g0173500]]
 +
|10.1038/ncomms4357
 +
|
 +
|A two-locus interaction causes interspecific hybrid weakness in rice
 +
|-
 +
|1096
 +
|''OsGLO4''
 +
|[[Os07g0152900]]
 +
|10.1111/ppl.12104
 +
| Suppression of glycolate oxidase causes glyoxylate accumulation that inhibits photosynthesis through deactivating Rubisco in rice
 +
|
 +
|-
 +
|1097
 +
|''DL''
 +
|[[Os03g0215200]]
 +
|10.1111/tpj/12411
 +
|
 +
|Annotated
 +
|-
 +
|1098
 +
|''OsETT2''
 +
|[[Os01g0670800]]
 +
|10.1111/tpj/12411
 +
| The DROOPING LEAF and OsETTIN2 genes promote awndevelopment in rice
 +
|
 +
|-
 +
|1099
 +
|''SHL2''
 +
|[[Os01g0527600]]
 +
|10.1111/tpj/12411
 +
| Rice RNA-dependent RNA polymerase 6 acts in small RNA biogenesis and spikelet development.
 +
|
 +
|-
 +
|1100
 +
|''OsLIS''
 +
|[[Os02g0121700]]
 +
|10.1111/pce.12169
 +
| Jasmonate induction of the monoterpene linalool confers resistance to rice bacterial blight and its biosynthesis is regulated by JAZ protein in rice
 +
|
 +
|-
 +
|1101
 +
|''OsPT9''
 +
|[[Os06g0324800]]
 +
|10.1111/pce.12224
 +
|Phosphate transporters OsPHT1;9 and OsPHT1;10 are involved in phosphate uptake in rice.
 +
|
 +
|-
 +
|1102
 +
|''OsPT10''
 +
|[[Os06g0325200]]
 +
|10.1111/pce.12224
 +
| Phosphate transporters OsPHT1;9 and OsPHT1;10 are involved in phosphate uptake in rice.
 +
|
 +
|-
 +
|1106
 +
|''LTG1''
 +
|[[Os02g0622100]]
 +
|10.1111/tpj.12487
 +
| Annotated
 +
|-
 +
|1107
 +
|''OsRPK1''
 +
|[[Os05g0486100]]
 +
|10.1016/j.bbagen.2014.01.003
 +
|
 +
|Annotated
 +
|-
 +
|1108
 +
|''d89''
 +
|[[Os05g0333200]]
 +
|10.1007/s10681-014-1071-y
 +
|
 +
|Annotated
 +
|-
 +
|1112
 +
|''OsEMF2b''
 +
|[[Os09g0306800]]
 +
|10.1007/s11105-014-0733-1
 +
| OsEMF2b Acts as a Regulator of Flowering Transition and Floral Organ Identity by Mediating H3K27me3 Deposition at OsLFL1 and OsMADS4 in Rice
 +
|
 +
|-
 +
|1117
 +
|''OsFIE1''
 +
|[[Os08g0137250]]
 +
|10.1104/pp.113.232413
 +
|
 +
|Annotated
 +
|-
 +
|1118
 +
|''OsUGE1''
 +
|[[Os05g0595100]]
 +
|10.1371/journal.pone.0096158
 +
| Functional Characterization of the Rice UDP-glucose 4- epimerase 1, OsUGE1: A Potential Role in Cell Wall Carbohydrate Partitioning during Limiting Nitrogen Conditions
 +
|
 +
|-
 +
|1119
 +
|''OsATG7''
 +
|[[Os01g0614900]]
 +
|10.4161/auto.28279
 +
| OsATG7 is required for autophagy-dependent lipid metabolism in rice postmeiotic anther development
 +
|
 +
|-
 +
|1120
 +
|''chalk5''
 +
|[[Os05g0156900]]
 +
|10.1038/ng.2923
 +
| Chalk5 encodes a vacuolar H + -translocating pyrophosphatase influencing grain chalkiness in rice
 +
|
 +
|-
 +
|1122
 +
|''cl7(t)''
 +
|[[Os07g0616000]]
 +
|10.1093/jxb/eru074
 +
|Rice DENSE AND ERECT PANICLE 2 is essential for determining panicle outgrowth and elongation
 +
|
 +
|-
 +
|1123
 +
|''OsGPX1''
 +
|[[Os04g0556300]]
 +
|10.1007/s10535-014-0394-9
 +
|Chloroplastic and mitochondrial GPX genes play a critical role in rice development
 +
|
 +
|-
 +
|1124
 +
|''OsGPX4''
 +
|[[Os06g0185900]]
 +
|10.1007/s10535-014-0394-9
 +
| Chloroplastic and mitochondrial GPX genes play a critical role in rice development
 +
|
 +
|-
 +
|1125
 +
|''D1352''
 +
|[[Os03g0232600]]
 +
|10.1007/s11032-014-0021-7
 +
|
 +
|Annotated
 +
|-
 +
|1126
 +
|''OsAHP1''
 +
|[[Os08g0557700]]
 +
|10.1104/pp.113.232629
 +
| Two Rice Authentic Histidine Phosphotransfer Proteins, OsAHP1 and OsAHP2, Mediate Cytokinin Signaling and Stress Responses in Rice
 +
|
 +
|-
 +
|1127
 +
|''OsAHP2''
 +
|[[Os09g0567400]]
 +
|10.1104/pp.113.232629
 +
| Two Rice Authentic Histidine Phosphotransfer Proteins, OsAHP1 and OsAHP2, Mediate Cytokinin Signaling and Stress Responses in Rice
 +
|
 +
|-
 +
|1128
 +
|''OsWR2''
 +
|[[Os06g0604000]]
 +
|10.1007/s11105-013-0687-8
 +
|
 +
|Annotated
 +
|-
 +
|1129
 +
|''Se14''
 +
|[[Os03g0151300]]
 +
|10.1371/journal.pone.0096064
 +
| Se14, Encoding a JmjC Domain-Containing Protein, Plays Key Roles in Long-Day Suppression of Rice Flowering through the Demethylation of H3K4me3 of RFT1
 +
|
 +
|-
 +
|1130
 +
|''MET1b''
 +
|[[Os07g0182900]]
 +
|10.1007/s11103-014-0178-9
 +
|
 +
|Annotated
 +
|-
 +
|1131
 +
|''MET1a''
 +
|[[Os03g0798300]]
 +
|10.1007/s11103-014-0178-9
 +
| Homologous recombination-mediated knock-in targeting of the MET1a gene for a maintenance DNA methyltransferase reproducibly reveals dosage-dependent spatiotemporal gene expression in rice
 +
|
 +
|-
 +
|1133
 +
|''smos1''
 +
|[[Os05g0389000]]
 +
|10.1093/pcp/pcu023
 +
| A Novel AP2-Type Transcription Factor, SMALL ORGAN SIZE1, Controls Organ Size Downstream of an Auxin Signaling Pathway
 +
|
 +
|-
 +
|1135
 +
|''OsCPK4''
 +
|[[Os02g0126400]]
 +
|10.1104/pp.113.230268
 +
|
 +
|Annotated
 +
|-
 +
|1136
 +
|''OsPAD4''
 +
|[[Os11g0195500]]
 +
|10.1111/tpj.12500
 +
| Rice OsPAD4 functions differently from Arabidopsis AtPAD4 in host-pathogen interactions
 +
|
 +
|-
 +
|1137
 +
|''OsMOGS''
 +
|[[Os01g0921200]]
 +
|10.1111/tpj.12497
 +
|
 +
|Annotated
 +
|-
 +
|1138
 +
|''OsJAR1''
 +
|[[Os05g0586200]]
 +
|10.1111/pce.12201
 +
|
 +
|Annotated
 +
|-
 +
|1139
 +
|''OsMADS34''
 +
|[[Os03g0756100]]
 +
|10.1111/nph.12657
 +
|
 +
|Annotated
 +
|-
 +
|1140
 +
|''OsMRP5''
 +
|[[Os03g0142800]]
 +
|10.1007/s11248-014-9792-1
 +
| Seed-specific silencing of OsMRP5 reduces seed phytic acid and weight in rice
 +
|
 +
|-
 +
|1141
 +
|''TMS 9-1(OsMS1)''
 +
|[[Os09g0449000]]
 +
|10.1007/s00122-014-2289-8
 +
|
 +
|Annotated
 +
|-
 +
|1142
 +
|''epsps''
 +
|[[Os06g0133900]]
 +
|10.1111/nph.12428
 +
|A novel 5-enolpyruvoylshikimate-3-phosphate (EPSP) synthase transgene for glyphosate resistance stimulates growth and fecundity in weedy rice (Oryza sativa) without herbicide
 +
|
 +
|-
 +
|1143
 +
|''DWT1''
 +
|[[Os01g0667400]]
 +
|10.1371/journal.pgen.1004154
 +
|
 +
|Annotated
 +
|-
 +
|1144
 +
|''DP2''
 +
|[[Os02g0531600]]
 +
|10.1007/s13258-013-0169-2
 +
| Morphological characteristics and gene mapping of a dense panicle (dp2) mutant in rice (Oryza sativa L.)
 +
|
 +
|-
 +
|1145
 +
|''OsRACK1A''
 +
|[[Os01g0686800]]
 +
|10.1371/journal.pone.0097120
 +
|OsRACK1 Is Involved in Abscisic Acid- and H 2 O 2 - Mediated Signaling to Regulate Seed Germination in Rice (Oryza sativa, L.)
 +
|
 +
|-
 +
|1223
 +
|''OsCAF1A''
 +
|[[Os08g0440300]]
 +
|10.1007/s11103-014-0196-7
 +
| Divergence of the expression and subcellular localization of CCR4‐associated factor 1 (CAF1) deadenylase proteins in Oryza sativa
 +
|
 +
|-
 +
|1146
 +
|''OsCAF1B''
 +
|[[Os04g0684900]]
 +
|10.1007/s11103-014-0196-7
 +
|
 +
| Divergence of the expression and subcellular localization of CCR4‐associated factor 1 (CAF1) deadenylase proteins in Oryza sativa
 +
|-
 +
|1147
 +
|''OsCAF1G''
 +
|[[Os09g0416800]]
 +
|10.1007/s11103-014-0196-7
 +
| Divergence of the expression and subcellular localization of CCR4‐associated factor 1 (CAF1) deadenylase proteins in Oryza sativa
 +
|
 +
|-
 +
|1148
 +
|''OsCAF1H''
 +
|[[Os02g0796300]]
 +
|10.1007/s11103-014-0196-7
 +
| Divergence of the expression and subcellular localization of CCR4‐associated factor 1 (CAF1) deadenylase proteins in Oryza sativa
 +
|
 +
|-
 +
|1149
 +
|''OsLOX2 (L-2)''
 +
|[[Os03g0738600]]
 +
|10.1007/s11248-014-9803-2
 +
| OsLOX2, a rice type I lipoxygenase, confers opposite effects on seed germination and longevity
 +
|
 +
|-
 +
|1150
 +
|''OsNAC111''
 +
|[[Os10g0177000]]
 +
|10.1094/mpmi-03-14-0065-r
 +
| OsNAC111, a Blast Disease–Responsive Transcription Factor in Rice, Positively Regulates the Expression of Defense-Related Genes
 +
|
 +
|-
 +
|1152
 +
|''OsCKX4''
 +
|[[Os01g0940000]]
 +
|10.1104/pp.114.238584
 +
|
 +
|Annotated
 +
|-
 +
|1155
 +
|''DIF1''
 +
|[[Os01g0626400]]
 +
|10.1371/journal.pone.0102529
 +
|
 +
|Annotated
 +
|-
 +
|1164
 +
|''CYP93G1''
 +
|[[Os04g0101400]]
 +
|10.1104/pp.114.239723
 +
| Cytochrome P450 93G1 Is a Flavone Synthase II That Channels Flavanones to the Biosynthesis of Tricin O-Linked Conjugates in Rice
 +
|
 +
|-
 +
|1224
 +
|''CYP93G2''
 +
|[[Os06g0102100]]
 +
|10.1104/pp.114.239723
 +
| CYP93G2 Is a Flavanone 2-Hydroxylase Required for C-Glycosylflavone Biosynthesis in Rice
 +
|
 +
|-
 +
|1165
 +
|''OsMYB4P''
 +
|[[Os11g0558200]]
 +
|10.1016/j.plaphy.2014.02.024
 +
| Overexpression of OsMYB4P, an R2R3-type MYB transcriptional activator, increases phosphate acquisition in rice
 +
|
 +
|-
 +
|1166
 +
|''rip-3 (a-tubulin)''
 +
|[[Os03g0726100]]
 +
|10.1016/j.plaphy.2014.04.011
 +
| Water-stress-induced inhibition of a -tubulin gene expression during growth, and its implications for reproductive success in rice
 +
|
 +
|-
 +
|1167
 +
|''OsRDR1''
 +
|[[Os02g0736200]]
 +
|10.1186/1471-2229-14-177
 +
| Mutation of the RDR1 gene caused genome-wide changes in gene expression, regional variation in small RNA clusters and localized alteration in DNA methylation in rice
 +
|
 +
|-
 +
|1168
 +
|''ygl7''
 +
|[[Os03g0811100]]
 +
|10.1371/journal.pone.0099564
 +
|
 +
|Annotated
 +
|-
 +
|1169
 +
|''OsDREB6''
 +
|[[Os09g0369000]]
 +
|10.1007/s12374-013-0480-0
 +
| Characterization of OsDREB6 Responsive to Osmotic and Cold Stresses in Rice
 +
|
 +
|-
 +
|1170
 +
|''OsPAO7''
 +
|[[Os09g0368500]]
 +
|10.1093/pcp/pcu047
 +
| Polyamine Oxidase 7 is a Terminal Catabolism-Type Enzyme in Oryza sativa and is Specifically Expressed in Anthers
 +
|
 +
|-
 +
|1172
 +
|''OsAGPL2''
 +
|[[Os01g0633100]]
 +
|10.1093/pcp/pcu057
 +
|  The Rice Endosperm ADP-Glucose Pyrophosphorylase Large Subunit is Essential for Optimal Catalysis and Allosteric Regulation of the Heterotetrameric Enzyme
 +
|
 +
|-
 +
|1173
 +
|''OsMYB103L''
 +
|[[Os08g0151300]]
 +
|10.1186/1471-2229-14-158
 +
| OsMYB103L, an R2R3-MYB transcription factor, influences leaf rolling and mechanical strength in rice
 +
|
 +
|-
 +
|1174
 +
|''DRO1''
 +
|[[Os09g0439800]]
 +
|10.1038/srep05563
 +
|
 +
|Annotated
 +
|-
 +
|1175
 +
|''FIB''
 +
|[[Os01g0169800]]
 +
|10.1111/tpj.12517
 +
|
 +
|Annotated
 +
|-
 +
|1176
 +
|''OsNIP3;1''
 +
|[[Os10g0513200]]
 +
|10.1111/tpj.12511
 +
| OsNIP3;1, a rice boric acid channel, regulates boron distribution and is essential for growth under boron-deficient conditions
 +
|
 +
|-
 +
|1177
 +
|''OsETOL1''
 +
|[[Os03g0294700]]
 +
|10.1111/tpj.12508
 +
|
 +
|Annotated
 +
|-
 +
|1178
 +
|''OsGLY1-11.2''
 +
|[[Os08g0191700]]
 +
|10.1111/tpj.12521
 +
| A unique Ni 2+ -dependent and methylglyoxal-inducible rice glyoxalase I possesses a single active site and functions in abiotic stress response
 +
|
 +
|-
 +
|1179
 +
|''OsKTN80a''
 +
|[[Os10g0494800]]
 +
|10.1111/jipb.12170
 +
| Overexpression of OsKTN80a, a katanin P80 ortholog, caused the repressed cell elongation and stalled cell division mediated by microtubule apparatus defects in primary root in Oryza Sativa
 +
|
 +
|-
 +
|1180
 +
|''WRKY45''
 +
|[[Os05g0322900]]
 +
|10.1007/s11103-014-0221-x
 +
|
 +
|Annotated
 +
|-
 +
|1181
 +
|''OsRZFP34''
 +
|[[Os01g0719100]]
 +
|10.1007/s11103-014-0217-6
 +
|Expression of a gene encoding a rice RING zinc‐finger protein, OsRZFP34, enhances stomata opening
 +
|Stress
 +
|-
 +
|1182
 +
|''OsSPS1''
 +
|[[Os01g0919400]]
 +
|10.1016/j.plantsci.2014.05.018
 +
|
 +
|Annotated
 +
|-
 +
|1183
 +
|''AM1''
 +
|[[Os04g0682800]]
 +
|10.1007/s00299-014-1639-y
 +
|
 +
|Annotated
 +
|-
 +
|1184
 +
|''OsMPK3''
 +
|[[Os02g0148100]]
 +
|10.1007/s00299-014-1620-9
 +
|
 +
|Annotated
 +
|-
 +
|1186
 +
|''OsMet1-2''
 +
|[[Os07g0182900]]
 +
|10.1073/pnas.1410761111
 +
|
 +
|Annotated
 +
|-
 +
|1189
 +
|''sped1''
 +
|[[Os06g0597500]]
 +
|10.1534/genetics.114.163931
 +
|Regulation of Inflorescence Branch Development in Rice Through a Novel Pathway Involving the Pentatricopeptide Repeat Protein sped1-D
 +
|
 +
|-
 +
|1190
 +
|''OsXXT1''
 +
|[[Os03g0300000]]
 +
|10.1093/jxb/eru189
 +
| Mutation in xyloglucan 6-xylosytransferase results in abnormal root hair development in Oryza sativa
 +
|
 +
|-
 +
|1191
 +
|''Nrat1''
 +
|[[Os02g0131800]]
 +
|10.1093/jxb/eru201
 +
|
 +
|Annotated
 +
|-
 +
|1192
 +
|''SLCHL4 (NAL1)''
 +
|[[Os04g0615000]]
 +
|10.1093/mp/ssu055
 +
|
 +
|Annotated
 +
|-
 +
|1193
 +
|''OsNMD3''
 +
|[[Os10g0573900]]
 +
|10.1093/jxb/eru150
 +
|
 +
|Annotated
 +
|-
 +
|1194
 +
|''OsRAN1''
 +
|[[Os01g0611100]]
 +
|10.1093/jxb/eru178
 +
|
 +
|Annotated
 +
|-
 +
|1195
 +
|''OsABCB14''
 +
|[[Os04g0459000]]
 +
|10.1111/tpj.12544
 +
| OsABCB14 functions in auxin transport and iron homeostasis in rice (Oryza sativa.L)
 +
|
 +
|-
 +
|1196
 +
|''OsRAD51D''
 +
|[[Os09g0104200]]
 +
|10.1111/tpj.12558
 +
|
 +
|Annotated
 +
|-
 +
|1198
 +
|''Roc5(rl(t))''
 +
|[[Os02g0674800]]
 +
|10.1007/s11434-014-0357-8
 +
|Isolation and characterization of rl (t) , a gene that controls leaf rolling in rice
 +
|
 +
|-
 +
|1200
 +
|''OsB12D1''
 +
|[[Os07g0604700]]
 +
|10.3390/ijms150813461
 +
|The Mitochondrion-Located Protein OsB12D1 Enhances Flooding Tolerance during Seed Germination and Early Seedling Growth in Rice
 +
|Stress
 +
|-
 +
|1201
 +
|''OsHO2''
 +
|[[Os03g0395000]]
 +
|10.1007/s00425-014-2116-0
 +
|Annotated
 +
|Biosynthesis
 +
|-
 +
|1202
 +
|''CL4 (= dwarf11)''
 +
|[[Os04g0469800]]
 +
|10.1007/s11434-014-0568-z
 +
|Annotated
 +
|Development
 +
|-
 +
|1203
 +
|''OsEXPA3''
 +
|[[Os05g0276500]]
 +
|10.2135/cropsci2013.11.0746
 +
|Repression of OsEXPA3 Expression Leadsto Root System Growth Suppression in Rice
 +
|Stress,Development
 +
|-
 +
|1204
 +
|''bHLH142''
 +
|[[Os01g0293100]]
 +
|10.1105/tpc.114.126292
 +
|Annotated
 +
|Development
 +
|-
 +
|1205
 +
|''SIT1''
 +
|[[Os02g0640500]]
 +
|10.1105/tpc.114.125187
 +
|The Receptor-Like Kinase SIT1 Mediates Salt
 +
Sensitivity by Activating MAPK3/6 and Regulating
 +
Ethylene Homeostasis in Rice
 +
|Stress
 +
|-
 +
|1206
 +
|''SIT2''
 +
|[[Os04g0531400]]
 +
|10.1105/tpc.114.125187
 +
| The Receptor-Like Kinase SIT1 Mediates Salt
 +
Sensitivity by Activating MAPK3/6 and Regulating
 +
Ethylene Homeostasis in Rice
 +
|Stress
 +
|-
 +
|1207
 +
|''CPK18''
 +
|[[Os07g0409900]]
 +
|10.1105/tpc.114.126441
 +
| Direct Phosphorylation and Activation of a Mitogen-Activated
 +
Protein Kinase by a Calcium-Dependent Protein
 +
Kinase in Rice
 +
|Stress
 +
|-
 +
|1208
 +
|''OsHPR1''
 +
|[[Os02g0101500]]
 +
|10.1111/jipb.12125
 +
| Two hydroxypyruvate reductases encoded by OsHPR1 and OsHPR2 are involved in
 +
photorespiratory metabolism in rice
 +
|Metabolism
 +
|-
 +
|1222
 +
|''OsHPR2''
 +
|[[Os01g0228600]]
 +
|10.1111/jipb.12125
 +
| Two hydroxypyruvate reductases encoded by OsHPR1 and OsHPR2 are involved in
 +
photorespiratory metabolism in rice
 +
|Metabolism
 +
|-
 +
|1209
 +
|''OsCAD2''
 +
|[[Os02g0187800]]
 +
|10.1038/srep06567
 +
|Annotated
 +
|
 +
|-
 +
|1210
 +
|''OsSLI1''
 +
|[[Os02g0649300]]
 +
|10.1155/2014/809353
 +
|OsSLI1, a Homeodomain Containing Transcription Activator, Involves Abscisic Acid Related Stress Response in Rice (Oryza sativa L.)
 +
|Stress,Development
 +
|-
 +
|1211
 +
|''OsMKK1 (MAPKK)''
 +
|[[Os06g0147800]]
 +
|10.1016/j.plantsci.2014.08.007
 +
|The mitogen-activated protein kinase cascade MKK1-MPK4 mediates salt signaling in rice
 +
|Stress
 +
|-
 +
|1212
 +
|''SPK1(SYG1)''
 +
|[[Os06g0603600]]
 +
|10.1073/pnas.1404680111
 +
|Annotated
 +
|Finished
 +
|-
 +
|1213
 +
|''SPK2(SYG2)''
 +
|[[Os02g0202200]]
 +
|10.1073/pnas.1404680111
 +
| Rice SPX1 and SPX2 inhibit phosphate starvation responses through interacting with PHR2 in a phosphate-dependent manner
 +
|
 +
|-
 +
|1215
 +
|''OsAAP6''
 +
|[[Os01g0878700]]
 +
|10.1038/ncomms5847
 +
| OsAAP6 functions as an important regulator of grain protein content and nutritional quality in rice
 +
|
 +
|-
 +
|1216
 +
|''OsSOT1(STV11)''
 +
|[[Os11g0505300]]
 +
|10.1038/ncomms5768
 +
| STV11 encodes a sulphotransferase and confers durable resistance to rice stripe virus
 +
|
 +
|-
 +
|1217
 +
|''tms5''
 +
|[[Os02g0214300]]
 +
|10.1038/srep06567
 +
|
 +
|Annotated
 +
|-
 +
|1218
 +
|''CYP703A3''
 +
|[[Os08g0131100]]
 +
|10.1111/jipb.12212
 +
|Rice CYP703A3, a cytochrome P450 hydroxylase, is essential for development of anther cuticle and pollen exine
 +
|Development
 +
|-
 +
|1219
 +
|''OsGUN4''
 +
|[[Os11g0267000]]
 +
|10.1007/s00122-014-2393-9
 +
|A down-regulated epi-allele of the genomes uncoupled 4 gene generates a xantha marker trait in rice.
 +
|Color
 +
|-
 +
|1220
 +
|''OsBADH1''
 +
|[[Os04g0464200]]
 +
|OsBADH1 is possibly involved in acetaldehyde oxidation in rice plant peroxisomes
 +
|OsBADH1 is possibly involved in acetaldehyde oxidation in rice plant peroxisomes
 +
|Stress
 +
|-
 +
|243
 +
|''gh2''
 +
|[[Os02g0187800]]
 +
|10.1104/pp.105.073007
 +
|Increased lodging resistance in long-culm, low-lignin gh2 rice for improved feed and bioenergy production
 +
|Stress
 
|-
 
|-
−
|''OsWRKY85''
+
|1221
−
|[[Os12g0507300]]
+
|''OsABCC1''
−
|LOC_Os12g32250
+
|[[Os04g0620000]]
−
|Christian A. Ross;Yue Liu;Qingxi J. Shen The WRKY Gene Family in Rice (Oryza sativa) Journal of Integrative Plant Biology, 2007, 49(6): 827-842
+
|10.1073/pnas.1414968111
 +
|A rice ABC transporter, OsABCC1, reduces arsenic accumulation in the grain
 +
|Stress
 
|-
 
|-
−
|''CycA21''
+
|demo
−
|[[Os12g0502300]]
+
|demo
−
|LOC_Os12g31810
+
|[[Os04g0459000]]
−
|Honggui La;Jun Li;Zhendong Ji;Yanjun Cheng;Xiuli Li;Shuye Jiang;Prasanna Nori Venkatesh;Srinivasan Ramachandran Genome-wide analysis of cyclin family in rice (Oryza Sativa L.) Molecular Genetics and Genomics, 2006, 275(4): 374-386
+
|demo
 +
|demo
 +
|demo
 
|}
 
|}

Latest revision as of 05:44, 8 March 2017

Number Gene name RAP ID DOI Reference TitleLDMAR Keywords
1 GA2ox3 Os01g0757200 10.1105/tpc.108.060913
  • A Novel Class of Gibberellin 2-Oxidases Control Semidwarfism, Tillering, and Root Development in Rice W
2 GA2ox9 Os02g0630300 10.1105/tpc.108.060913
  • A Novel Class of Gibberellin 2-Oxidases Control Semidwarfism, Tillering, and Root Development in Rice W
3 GA2ox6 Os04g0522500 10.1105/tpc.108.060913
  • A Novel Class of Gibberellin 2-Oxidases Control Semidwarfism, Tillering, and Root Development in Rice W
4 SG1 Os09g0459200 10.1104/pp.111.187567
  • Annotated
5 ALS Os02g0510200 10.1007/s00299-010-0915-8
  • Selecting genetic transformants of indica and indica-derived rice cultivars using bispyribac sodium and a mutated ALS gene
6 EL5 Os02g0559800 10.1111/j.1365-313X.2007.03120.x
  • SHORT GRAIN1 Decreases Organ Elongation and Brassinosteroid Response in Rice1[W][OA]
7 OASA2 Os03g0264400 10.1104/pp.111.175778
  • Application of Gene Targeting to Designed Mutation Breeding of High-Tryptophan Rice1[W][OA]
8 OsGAD2 Os04g0447800 10.1093/jxb/erm120
  • C-terminal extension of rice glutamate decarboxylase(OsGAD2) functions as an autoinhibitory domain and overexpression of a truncated mutant results in the accumulation of extremely high levels of GABA in plant cells
9 OsIAA3 Os12g0601400 10.1111/j.1365-313X.2006.02693.x
  • Production and characterization of auxin-insensitive rice by overexpression of a mutagenized rice IAA protein
10 IDEF1 Os08g0101000 10.1111/j.1365-313X.2011.04772.x
  • Annotated
11 OsPLDα1 Os01g0172400 10.1111/j.1744-7909.2010.01021.x
  • Annotated
12 AFT Os01g0185300 10.1007/s00425-009-1077-1
  • Down-regulation of four putative arabinoxylan feruloyl transferase genes from family PF02458 reduces ester-linked ferulate content in rice cell walls
13 OsGAE1 Os01g0201600 10.1007/s11103-006-9030-1
  • The rice OsGAE1 is a novel gibberellin-regulated gene and involved in rice growth
14 OsMADS3 Os01g0201700 10.1023/A:1006051911291
  • Annotated
15 OsSAMS3 Os01g0293000 10.1016/j.jplph.2011.05.020
  • Knockdown of SAMS genes encoding S-adenosyl-l-methionine synthetases causes methylation alterations of DNAs and histones and leads to late flowering in rice
16 OsSAMS2 Os01g0323600 10.1016/j.jplph.2011.05.020
  • Knockdown of SAMS genes encoding S-adenosyl-l-methionine synthetases causes methylation alterations of DNAs and histones and leads to late flowering in rice
17 OsACO7 Os01g0580500 10.1104/pp.110.162412
  • Cyanide, a Coproduct of Plant Hormone Ethylene Biosynthesis, Contributes to the Resistance of Rice to Blast Fungus
18 OsrbohA Os01g0734466 10.5511/plantbiotechnology.22.127
  • Function of the rice gp91phox homologs OsrbohA and OsrbohE genes in ROS-dependent plant immune responses
19 Orysa;CycB1;1 Os01g0805600 10.1007/s00425-009-1051-y
  • Annotated
20 OsNAC4 Os01g0816100 10.1038/emboj.2009.39
  • The transcription factor OsNAC4 is a key positive regulator of plant hypersensitive cell death
21 OsHAP3A Os01g0834400 10.1046/j.1365-313X.2003.01897.x
  • Annotated
22 HDT702 Os01g0909100 10.1016/j.bbrc.2009.07.162
  • Rice histone deacetylase genes display specific expression patterns and developmental functions
23 OsDCL1 Os01g0909200 10.1104/pp.105.063420
  • Loss of Function of OsDCL1 Affects MicroRNA Accumulation and Causes Developmental Defects in Rice
24 SDG714 Os01g0927000 10.1105/tpc.106.048124
  • SDG714, a Histone H3K9 Methyltransferase, Is Involved in Tos17 DNA Methylation and Transposition in Rice
25 rtS Os01g0929600 10.1007/s11103-006-9031-0
  • Annotated
26 Osg1 Os01g0947700 10.1007/s00425-010-1301-z
  • A rice �-1,3-glucanase gene Osg1 is required for callose degradation in pollen development
27 NOA1 Os02g0104700 10.1371/journal.pone.0020015
  • Annotated
28 OsNOA1?RIF1 Os02g0104700 10.1111/j.1469-8137.2010.03264.x
  • Annotated
29 Os4CL3 Os02g0177600 10.1104/pp.111.178301
  • Functional Characterization of Evolutionarily Divergent 4-Coumarate:Coenzyme A Ligases in Rice
30 HDA703 Os02g0214900 10.1016/j.bbrc.2009.07.162
  • Rice histone deacetylase genes display specific expression patterns and developmental functions
31 HDA710 Os02g0215200 10.1016/j.bbrc.2009.07.162
  • Rice histone deacetylase genes display specific expression patterns and developmental functions
32 RPBF Os02g0252400 10.1111/j.1365-313X.2009.03925.x
  • Compensation and interaction between RISBZ1 and RPBF during grain filling in rice
33 DCW11 Os02g0255100 10.1093/pcp/pcn036
  • DCW11, Down-Regulated Gene 11 in CW-Type Cytoplasmic Male Sterile Rice,Encoding Mitochondrial Protein Phosphatase 2C is Related to Cytoplasmic Male Sterility
34 OsHARP Os02g0256200 10.1007/s00726-008-0043-8
  • Characterization of a histidine- and alanine-rich protein showing interaction with calreticulin in rice
35 OsGMST1 Os02g0274900 10.1093/jxb/err178
  • Annotated
36 OsTudor-SN Os02g0523500 10.1111/j.1365-313X.2008.03516.x
  • The cytoplasmic-localized, cytoskeletal-associated RNA binding protein OsTudor-SN: evidence for an essential role in storage protein RNA transport and localization
37 RAR1 Os02g0535400 10.1105/tpc.107.055517
  • Annotated
38 GF14e Os02g0580300 10.1111/j.1365-313X.2011.04728.x
  • Annotated
39 OsNAR2.1 Os02g0595900 10.1111/j.1365-3040.2011.02335.x
  • Rice OsNAR2.1 interacts with OsNRT2.1, OsNRT2.2 and OsNRT2.3a nitrate transporters to provide uptake over high and low concentration ranges
40 OsCKI1 Os02g0622100 10.1046/j.1365-313X.2003.01866.x
  • Annotated
41 Oscry2 Os02g0625000 10.1093/pcp/pcj064
  • Involvement of Rice Cryptochromes in De-etiolation Responses and Flowering
42 OsYSL15 Os02g0650300 10.1074/jbc.M806042200
  • Annotated
43 SGL1 Os02g0762600 10.1104/pp.111.187567
  • SHORT GRAIN1 Decreases Organ Elongation and Brassinosteroid Response in Rice
44 CEBiP Os03g0133400 10.1111/j.1365-313X.2010.04328.x
  • Perception of the chitin oligosaccharides contributes to disease resistance to blast fungus Magnaporthe oryzae in rice
45 OsPAO Os03g0146400 10.1016/j.jplph.2011.05.026
  • Knockdown of OsPAO and OsRCCR1 cause different plant death phenotypes in rice
46 OsPT2 Os03g0150800 10.1111/j.1365-313X.2008.03726.x
  • Two rice phosphate transporters, OsPht1;2 and OsPht1;6, have different functions and kinetic properties in uptake and translocation
47 OsSUT1 Os03g0170900 10.1093/pcp/pce148
  • Annotated
48 OsBP-73 Os03g0183100 10.1023/A:1024854101965
  • OsBP-73, a rice gene, encodes a novel DNA-binding protein with a SAP-like domain and its genetic interference by double-stranded RNA inhibits rice growth
49 OsMDP1 Os03g0186600 10.1111/j.1365-313X.2006.02804.x
  • A brassinolide-suppressed rice MADS-box transcription factor, OsMDP1, has a negative regulatory role in BR signaling
50 RINO1 Os03g0192700 10.1093/pcp/pcp071
  • Differential Effects of a Transgene to Confer Low Phytic Acid in Caryopses Located at Different Positions in Rice Panicles
51 OsMADS1 Os03g0215400 10.1111/j.1365-313X.2009.04101.x
  • Annotated
53 OsApx1 Os03g0285700 10.1016/j.phytochem.2010.01.003
  • Annotated
54 APx1 Os03g0285700 10.1111/j.1365-3040.2011.02366.x
  • Annotated
55 OsFAD7 Os03g0290300 10.1093/pcp/pcm107
  • Disease Resistance against Magnaporthe grisea is Enhanced in Transgenic Rice with Suppression of u-3 Fatty Acid Desaturases
57 RGB1 Os03g0669100 10.1111/j.1365-313X.2011.04643.x
  • Suppression of the rice heterotrimeric G protein b-subunit gene, RGB1, causes dwarfism and browning of internodes and lamina joint regions
58 OsPIPK1 Os03g0701800 10.1023/B:PLAN.0000028796.14336.24
  • OsPIPK1, a rice phosphatidylinositol monophosphate kinase, regulates rice heading by modifying the expression of floral induction genes
59 ero1 Os03g0733800 10.1073/pnas.0904429106
  • ER membrane-localized oxidoreductase Ero1 is required for disulfide bond formation in the rice endosperm
60 OsSPO11-1 Os03g0752200 10.1007/s00412-010-0284-7
  • OsSPO11-1 is essential for both homologous chromosome pairing and crossover formation in rice
61 CysR10 Os03g0766000 10.1093/pcp/pcr053
  • A Role for the Cysteine-Rich 10 kDa Prolamin in Protein Body I Formation in Rice
62 OsGLO1 Os03g0786100 10.1093/jxb/erp056
  • Inducible antisense suppression of glycolate oxidase reveals its strong regulation over photosynthesis in rice
63 OsMet1 Os03g0798300 10.1111/j.1365-313X.2008.03624.x
  • Annotation
64 CYP99A3 Os04g0178400 10.1111/j.1365-313X.2010.04408.x
  • Annotation
65 CYP99A2 Os04g0180400 10.1111/j.1365-313X.2010.04408.x
  • CYP99A3: functional identification of a diterpene oxidase from the momilactone biosynthetic gene cluster in rice
66 Ostil1 Os04g0460600 10.1111/j.1469-8137.2007.02177.x
  • Overexpression of a NAC-domain protein promotes shoot Blackwell Publishing Ltd branching in rice
67 OsPBP1 Os04g0531100 10.1093/mp/ssn035
  • A Novel C2-Domain Phospholipid-Binding Protein, OsPBP1, Is Required for Pollen Fertility in Rice
68 YAB3 Os04g0536300 10.1104/pp.107.095737
  • Annotation
69 OsACS2 Os04g0578000 10.1104/pp.110.162412
  • Cyanide, a Coproduct of Plant Hormone Ethylene Biosynthesis, Contributes to the Resistance of Rice to Blast Fungus
70 rca Os04g0658300 10.1093/aob/mcl025
  • Annotation
71 OsRMC Os04g0659300 10.1111/j.1365-3040.2007.01663.x
  • Annotation
72 OsMT2b Os05g0111300 10.1104/pp.107.110304
  • Annotation
73 XB3 Os05g0112000 10.1105/tpc.106.046730
  • Annotation
74 STAR2 Os05g0119000 10.1105/tpc.108.064543
  • Annotation
75 OsSAMS1 Os05g0135700 10.1016/j.jplph.2011.05.020
  • Annotation
76 OsACO5 Os05g0149400 10.1104/pp.110.162412
  • Cyanide, a Coproduct of Plant Hormone Ethylene Biosynthesis, Contributes to the Resistance of Rice to Blast Fungus
77 OsBLE3 Os05g0245300 10.1016/j.phytochem.2006.05.026
  • OsBLE3, a brassinolide-enhanced gene, is involved in the growth of rice
78 OsMADS4 Os05g0423400 10.1023/A:1006051911291
  • Identification of class B and class C floral organ identity genes from rice plants
79 IDEF2 Os05g0426200 10.1074/jbc.M708732200
  • A Novel NAC Transcription Factor, IDEF2, That Recognizes the Iron Deficiency-responsive Element 2 Regulates the Genes Involved in Iron Homeostasis in Plants
81 OsHAP3C Os05g0573500 10.1046/j.1365-313X.2003.01897.x
  • Annotated
82 OsRAD21-4 Os05g0580500 10.1007/s11103-005-4922-z
  • Annotated
83 OsMAPK6 Os06g0154500 10.1104/pp.104.057414
  • A Sphingolipid Elicitor-Inducible Mitogen-Activated Protein Kinase Is Regulated by the Small GTPase OsRac1 and Heterotrimeric G-Protein in Rice
84 RFT1 Os06g0157500 10.1242/dev.040170
  • Annotated
85 OsMADS5 Os06g0162800 10.1111/j.1365-313X.2009.04101.x
  • Functional conservation and diversification of class E floral homeotic genes in rice (Oryza sativa)
86 SSIIa Os06g0229800 10.1139/g11-010
  • Annotated
87 OsGSR1 Os06g0266800 10.1111/j.1365-313X.2008.03707.x
  • OsGSR1 is involved in crosstalk between gibberellins and brassinosteroids in rice
89 HDA702 Os06g0583400 10.1016/j.bbrc.2009.07.162
  • Annotation
90 OsPNH1 Os06g0597400 10.1046/j.1365-313X.2002.01279.x
  • OsPNH1 regulates leaf development and maintenance of the shoot apical meristem in rice
91 OsPLDα4 Os06g0604200 10.1104/pp.111.183749
  • The Chloroplast-Localized Phospholipases D a4 and a5 Regulate Herbivore-Induced Direct and Indirect Defenses in Rice
92 OsPLDα5 Os06g0604300 10.1104/pp.111.183749
  • The Chloroplast-Localized Phospholipases D a4 and a5 Regulate Herbivore-Induced Direct and Indirect Defenses in Rice
93 OsLIC Os06g0704300 10.1371/journal.pone.0003521
  • OsLIC, a Novel CCCH-Type Zinc Finger Protein with Transcription Activation, Mediates Rice Architecture via Brassinosteroids Signaling
94 OsEIN2 Os07g0155600 10.1104/pp.109.152702
  • Annotated
95 HDA704 Os07g0164100 10.1016/j.bbrc.2009.07.162
  • Rice histone deacetylase genes display specific expression patterns and developmental functions
96 RISBZ1 Os07g0182000 10.1111/j.1365-313X.2009.03925.x
  • Annotated
97 NDP kinase Os07g0492000 10.1104/pp.122.2.447
  • Annotated
98 OsDR8 Os07g0529600 10.1007/s11103-005-4770-x
  • Annotated
99 OsFOR1 Os07g0568700 10.1023/B:PLAN.0000006940.89955.f1
  • Annotated
100 OsBZR1 Os07g0580500 10.1073/pnas.0706386104
  • Functions of OsBZR1 and 14-3-3 proteins in brassinosteroid signaling in rice
101 Osppc4 Os01g0208700 10.1073/pnas.0913127107
  • Phosphoenolpyruvate carboxylase intrinsically located in the chloroplast of rice plays a crucial role in ammonium assimilation
102 OsPDK1 Os07g0637300 10.1093/pcp/pci241
  • Gibberellin Regulates Mitochondrial Pyruvate Dehydrogenase Activity in Rice
103 OsBLE2 Os07g0650600 10.1023/A:1025001304994
  • A novel brassinolide-enhanced gene identified by cDNA microarray is involved in the growth of rice
104 aldolase Os07g0650600 10.1007/s11103-004-5920-2
  • Characterization of fructose-bisphosphate aldolase regulated by gibberellin in roots of rice seedling
105 rtGA2.1 Os07g0687700 10.1111/j.1365-313X.2005.02457.x
  • Alteration of TGA factor activity in rice results in enhanced tolerance to Xanthomonas oryzae pv. oryzae
106 OsFAD8 Os07g0693800 10.1093/pcp/pcm107
  • Annotated
107 OsApx2 Os07g0694700 10.1016/j.phytochem.2010.01.003
  • Annotated
108 APx2 Os07g0694700 10.1111/j.1365-3040.2011.02366.x
  • Annotated
109 OsDEG10 Os08g0139000 10.1016/j.bbrc.2009.01.131
  • Annotated
110 OsDR10 Os08g0155900 10.1371/journal.pone.0004603
  • A Rice Gene of De Novo Origin Negatively Regulates Pathogen-Induced Defense Response
111 OsBAK1 Os08g0174700 10.1111/j.1467-7652.2009.00444.x
  • Annotated
112 OsGLP8 Os08g0189200 10.1104/pp.108.128348
  • A Germin-Like Protein Gene Family Functions as a Complex Quantitative Trait Locus Conferring Broad-Spectrum Disease Resistance in Rice
113 SSIIIa Os08g0191433 10.1139/g11-010
  • Double repression of soluble starch synthase genes SSIIa and SSIIIa in rice (Oryza sativa L.) uncovers interactive effects on the physicochemical properties of starch
114 OsRAD21-3 Os08g0266700 10.1111/j.1365-313X.2007.03190.x
  • OsRAD21-3, an orthologue of yeast RAD21, is required for pollen development in Oryza sativa
115 OsCCC1 Os08g0323700 10.1007/s11103-011-9744-6
  • Annotated
116 OsrbohE Os08g0453733 10.5511/plantbiotechnology.22.127
  • Function of the rice gp91phox homologs OsrbohA and OsrbohE genes in ROS-dependent plant immune responses
117 OsHI-LOX Os08g0508800 10.1111/j.1365-313X.2009.03988.x
  • Silencing OsHI-LOX makes rice more susceptible to chewing herbivores, but enhances resistance to a phloem feeder
118 OsAPx-R Os08g0522400 10.1111/j.1469-8137.2011.03659.x
  • Ascorbate peroxidase-related (APx-R) is a new hemecontaining protein functionally associated with ascorbate peroxidase but evolutionarily divergent
119 OsMADS7 Os08g0531700 10.1111/j.1365-313X.2009.04101.x
  • Annotated
120 Os8N3 Os08g0535200 10.1073/pnas.0604088103
  • Annotated
121 OsCERK1 Os08g0538300 10.1111/j.1365-313X.2010.04324.x
  • Two LysM receptor molecules, CEBiP and OsCERK1,cooperatively regulate chitin elicitor signaling in rice
122 OsSPY Os08g0559300 10.1111/j.1365-313X.2006.02875.x
  • Annotated
123 OsPT6 Os08g0564000 10.1111/j.1365-313X.2008.03726.x
  • Two rice phosphate transporters, OsPht1;2 and OsPht1;6, have different functions and kinetic properties in uptake and translocation
124 OsMADS8 Os09g0507200 10.1111/j.1365-313X.2009.04101.x
  • Functional conservation and diversification of class E floral homeotic genes in rice (Oryza sativa)
125 OsSGT1 Os09g0518200 10.1111/j.1365-313X.2008.03697.x
  • Functional conservation and diversification of class E floral homeotic genes in rice (Oryza sativa)
126 OsGEN-L Os09g0521900 10.1093/pcp/pci090
  • RNAi-mediated Silencing of OsGEN-L (OsGEN-like), a New Member of the RAD2/XPG Nuclease Family, Causes Male Sterility by Defect of Microspore Development in Rice
128 Ugp1 Os09g0553200 10.1105/tpc.106.044123
  • Rice UDP-Glucose Pyrophosphorylase1 Is Essential for Pollen Callose Deposition and Its Cosuppression Results in a New Type of Thermosensitive Genic Male Sterility
129 OsRCCR1 Os10g0389200 10.1016/j.jplph.2011.05.026
  • Knockdown of OsPAO and OsRCCR1 cause different plant death phenotypes in rice
130 EBL1 Os10g0390800 10.1007/s10529-010-0405-7
  • Phytochrome-regulated EBL1 contributes to ACO1 upregulation in rice
131 OsDCL3b Os10g0485600 10.1111/j.1365-313X.2011.04805.x
  • Roles of DCL4 and DCL3b in rice phased small RNA biogenesis
132 OsPLDbeta1 Os10g0524400 10.1104/pp.108.131979
  • Suppression of a Phospholipase D Gene, OsPLDb1,Activates Defense Responses and Increases Disease Resistance in Rice
134 SPK Os10g0539600 10.1093/pcp/pch122
  • A Rice Antisense SPK Transformant that Lacks the Accumulation of Seed Storage Substances Shows no Correlation Between Sucrose Concentration in Phloem Sap and Demand for Carbon Sources in the Sink Organs
135 OsMPK5 Os11g0684000 10.1104/pp.109.152702
  • Abscisic Acid-Induced Resistance against the Brown Spot Pathogen Cochliobolus miyabeanus in Rice Involves MAP Kinase-Mediated Repression of Ethylene Signaling
136 OsDMC1 Os12g0143800 10.1007/s11103-007-9195-2
  • OsDMC1 is required for homologous pairing in Oryza sativa
137 Ostrxm Os12g0188700 10.1104/pp.108.123547
  • Abnormal Chloroplast Development and Growth Inhibition in Rice Thioredoxin m Knock-Down Plants
139 OsRBCS2 Os12g0274700 10.1111/j.1365-3040.2011.02434.x
  • Effect of individual suppression of RBCS multigene family on Rubisco contents in rice leavespce_2434 546..553
143 OsTDL1A Os12g0472500 10.1111/j.1365-313X.2008.03426.x
  • Annotated
144 OsSpo11-4 Os12g0622500 10.1371/journal.pone.0020327
  • Annotated
145 OsDOS Os01g0192000 10.1104/pp.106.082941
  • Annotated
146 OsNPR1 Os01g0194300 10.1007/s11103-010-9695-3
  • Annotated
147 OsRac1 Os01g0229400 10.1073/pnas.98.2.759
  • Essential role of the small GTPase Rac in disease resistance of rice
148 Rdd1 Os01g0264000 10.1111/j.1365-3040.2009.01954.x
  • Circadian clock- and phytochrome-regulated Dof-like gene,Rdd1, is associated with grain size in rice
149 OsLOL2 Os01g0612700 10.1007/s00438-007-0232-2
  • The rice OsLOL2 gene encodes a zinc Wnger protein involved in rice growth and disease resistance
150 OsYUCCA1 Os01g0645400 10.1104/pp.106.091561
  • Auxin Biosynthesis by the YUCCA Genes in Rice
151 PME1 Os01g0788400 10.1111/j.1365-313X.2011.04486.x
  • Methanol is an endogenous elicitor molecule for the synthesis of tryptophan and tryptophan-derived secondary metabolites upon senescence of detached rice leaves
152 OsABI5 Os01g0859300 10.1007/s11103-008-9298-4
  • Annotated
153 OsNAC6 Os01g0884300 10.1111/j.1365-313X.2009.03908.x
  • Annotated
154 OsIRO2 Os01g0952800 10.1111/j.1365-313X.2007.03149.x
  • Annotated
155 BiP1 Os02g0115900 10.1111/j.1365-313X.2010.04453.x
  • Annotated
156 OsYSL2 Os02g0649900 10.1111/j.1365-313X.2010.04158.x
  • Annotated
157 ARAG1 Os02g0657000 10.1093/aob/mcp303
  • Annotated
158 OsPIP1;1 Os02g0666200 10.1038/cr.2007.34
  • Annotated
159 OsDHODH1 Os02g0736400 10.1111/j.1744-7909.2009.00853.x
  • Annotated
160 OsPIN1 Os02g0743400 10.1093/pcp/pci183
  • Annotated
161 OsMADS22 Os02g0761000 10.1111/j.1365-313X.2008.03406.x
  • Rice SVP-group MADS-box proteins, OsMADS22 and OsMADS55, are negative regulators of brassinosteroid responses
162 AmyI-1 Os02g0765600 10.1093/pcp/pci091
  • Annotated
163 OsPIP1;3 Os02g0823100 10.1038/cr.2007.34
  • Annotated
164 OsACDR1 Os03g0160100 10.1007/s10059-009-0161-5
  • Annotated
165 OsBRR1 Os03g0228800 10.1007/s00425-009-0951-1
  • A putative leucine-rich repeat receptor kinase, OsBRR1, is involved in rice blast resistance
166 OsMAPK5 Os03g0285800 10.1105/tpc.008714
  • Annotation
167 OsWRKY31 Os03g0321700 10.1038/cr.2007.104
  • Constitutive expression of pathogen-inducible OsWRKY31 enhances disease resistance and affects root growth and auxin response in transgenic rice plants
168 OsDIS1 Os03g0356414 10.1104/pp.111.180893
  • The SINA E3 Ligase OsDIS1 Negatively Regulates Drought Response in Rice
169 OsLOX1 Os03g0700700 10.1007/s11103-007-9278-0
  • A novel lipoxygenase gene from developing rice seeds confers dual position specificity and responds to wounding and insect attack
170 OsSrt1 Os04g0271000 10.1104/pp.107.099473
  • Down-Regulation of a SILENT INFORMATION REGULATOR2-Related Histone Deacetylase Gene, OsSRT1, Induces DNA Fragmentation and Cell Death in Rice
171 RERJ1 Os04g0301500 10.1016/j.bbrc.2004.10.126
  • Annotated
172 OsGA2ox6 Os04g0522500 10.1016/S1673-8527(09)60022-9
  • Annotated
173 RFL Os04g0598300 10.1073/pnas.0709059105
  • Annotated
174 OsrcaA2 Os04g0658300 10.1006/bbrc.2001.6269
  • Annotated
175 OsMTP1 Os05g0128400 10.1007/s00299-011-1140-9
  • Annotated
176 OsWRKY45 Os05g0322900 10.1093/jxb/err144
  • Annotated
177 OsEXP4 Os05g0477600 10.1105/tpc.011965
  • Regulation of Expansin Gene Expression Affects Growth and Development in Transgenic Rice Plants
178 SDG728 Os05g0490700 10.1093/mp/ssq030
  • Rice SUVH Histone Methyltransferase Genes Display Specific Functions in Chromatin Modification and Retrotransposon Repression
179 OsRan2 Os05g0574500 10.1093/jxb/erp341
  • Annotation
180 OsMADS55 Os06g0217300 10.1111/j.1365-313X.2008.03406.x
  • Rice SVP-group MADS-box proteins, OsMADS22 and OsMADS55, are negative regulators of brassinosteroid responses
181 OsCIPK23 Os07g0150700 10.1016/S1673-8527(08)60073-9
  • Annotated
182 OsTRXh1 Os07g0186000 10.1104/pp.111.182808
  • Annotated
183 TDC Os08g0140300 10.1104/pp.109.138552
  • Annotated
184 OsLSD1 Os08g0159500 10.1094/MPMI-18-0375
  • Overexpression of OsRAN2 in rice and Arabidopsis renders transgenic plants hypersensitive to salinity and osmotic stress
185 OsDERF1 Os08g0454000 10.1371/journal.pone.0025216
  • Annotated
186 OsGLP1 Os08g0460000 10.1016/j.bbrc.2010.02.142
  • Functional role of rice germin-like protein1 in regulation of plant height and disease resistance
187 OsPRP3 Os10g0148100 10.1007/s11103-009-9557-z
  • OsPRP3, a flower specific proline-rich protein of rice, determines extracellular matrix structure of floral organs and its overexpression confers cold-tolerance
188 OsPT8 Os10g0444700 10.1104/pp.111.175240
  • The Phosphate Transporter Gene OsPht1;8 Is Involved in Phosphate Homeostasis in Rice
189 OsWRKY89 Os11g0117400 10.1007/s11103-007-9244-x
  • Annotated
190 OsNAC5 Os11g0184900 10.1007/s00425-011-1403-2
  • Annotated
191 OsPCBP Os11g0689300 10.1007/s12374-011-9184-5
  • A Calmodulin-Binding Protein from Rice is Essential to Pollen Development
192 OsrcaA1 Os11g0707000 10.1006/bbrc.2001.6269
  • Involvement of a Ca21-Dependent Protein Kinase Component Downstream to the Gibberellin-Binding Phosphoprotein, RuBisCO Activase, in Rice
193 sui1 Os01g0118300 10.1007/s11103-011-9825-6
  • Identification and characterization of SHORTENED UPPERMOST INTERNODE 1, a gene negatively regulating uppermost internode elongation in rice
194 Osjag Os01g0129200 10.1007/s11103-010-9703-7
  • Molecular cloning and functional characterization of OsJAG gene based on a complete-deletion mutant in rice (Oryza sativa L.)
195 sl1 Os01g0129200 10.1111/j.1365-313X.2009.03913.x
  • STAMENLESS 1, encoding a single C2H2 zinc finger protein, regulates floral organ identity in rice
197 OsABCG31 Os01g0177900 10.1073/pnas.1108444108
  • Annotated
198 OsGI Os01g0182600 10.1105/tpc.111.083238
  • Annotated
199 d2 Os01g0197100 10.1105/tpc.014712
  • Annotated
200 mads3 Os01g0201700 10.1105/tpc.110.074369
  • Annotated
201 OsGSK1 Os01g0205700 10.1007/s11103-007-9213-4
  • Annotated
202 nyc1 Os01g0227100 10.1105/tpc.106.042911
  • Annotated
203 OSH6 Os01g0302500 10.1007/s00425-007-0576-1
  • A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts,in rice
204 phd1 Os01g0367100 10.1371/journal.pgen.1002196
  • Annotated
205 dbs1 Os01g0513900 10.1093/pcp/pci206
  • The Rice Mutant dwarf bamboo shoot 1: A Leaky Mutant of the NACK-type Kinesin-like Gene Can Initiate Organ Primordia but not Organ Development
206 shl2 Os01g0527600 10.1073/pnas.0704339104 Finishend
  • Annotated
207 osubp6 Os01g0550100 10.1007/s10059-009-0138-4
  • Structure and Expression of OsUBP6, an Ubiquitin-Specific Protease 6 Homolog in Rice (Oryza sativa L.)
208 log Os01g0588900 10.1038/nature05504
  • Direct control of shoot meristem activity by a cytokinin-activating enzyme
209 osagpl2 Os01g0633100 10.1007/s11103-007-9153-z
  • Annotated
210 snl6 Os01g0639200 10.1371/journal.pgen.1001123
  • Annotated
211 Ostpc1 Os01g0678500 10.1093/pcp/pch082
  • Annotated
212 nadh-gogat1 Os01g0682001 10.1007/s00726-010-0531-5
  • Reverse genetics approach to characterize a function of NADH-glutamate synthase1 in rice plants
213 dgl1 Os01g0683100 10.1104/pp.105.062968
  • Analysis of the Rice Mutant dwarf and gladius leaf 1. Aberrant Katanin-Mediated Microtubule Organization Causes Up-Regulation of Gibberellin Biosynthetic Genes Independently of Gibberellin Signaling
214 spl28* Os01g0703600 10.1111/j.1469-8137.2009.03047.x
  • Annotated
215 OsLFL Os01g0713600 10.1016/j.jplph.2007.07.010
  • Overexpression of transcription factor OsLFL1 delays flowering time in Oryza sativa
216 d61 Os01g0718300 10.1105/tpc.12.9.1591
  • Annotated
217 d10 Os01g0746400 10.1111/j.1365-313X.2007.03210.x
  • Annotated
218 Bc7(t) Os01g0750300 10.1016/S1673-8527(07)60115-5
  • Biochemical and molecular characterization of a rice glutelin allele for the GluA-1 gene
221 gamyb Os01g0812000 10.1105/tpc.017327
  • Annotated
222 lax Os01g0831000 10.1073/pnas.1932414100
  • Annotated
223 oscfbp1 Os01g0866400 10.1111/j.1365-3040.2008.01890.x
  • Annotated
224 Osabf1 Os01g0867300 10.1007/s11103-009-9592-9
  • Annotated
225 Os-pollux Os01g0870100 10.1104/pp.108.131540
  • Antiquity and Function of CASTOR and POLLUX, the Twin Ion Channel-Encoding Genes Key to the Evolution of Root Symbioses in Plants
226 OsPdk1 Os01g0872800 10.1093/pcp/pcq167
  • Pdk1 Kinase Regulates Basal Disease Resistance Through the OsOxi1–OsPti1a Phosphorylation Cascade in Rice
227 Osspr1 Os01g0898300 10.1111/j.1469-8137.2010.03513.x
  • Annotated
228 eg1 Os01g0900400 10.1111/j.1365-313X.2008.03710.x
  • A putative lipase gene EXTRA GLUME1 regulates both empty-glume fate and spikelet development in rice
229 pla2 Os01g0907900 10.1105/tpc.105.037622
  • Annotated
230 lhd2 Os01g0907900 10.1038/sj.cr.7310034
  • Annotated
231 C3H12 Os01g0917400 10.1104/pp.111.191379
  • A CCCH-Type Zinc Finger Nucleic Acid-Binding Protein Quantitatively Confers Resistance against Rice Bacterial Blight Disease
232 msp1 Os01g0917500 10.1105/tpc.012401
  • The MSP1 Gene Is Necessary to Restrict the Number of Cells Entering into Male and Female Sporogenesis and to Initiate Anther Wall Formation in Rice
233 OsFRDL4 Os01g0919100 10.1111/j.1365-313X.2011.04757.x
  • An Al-inducible MATE gene is involved in external detoxification of Al in rice
234 OsSSI2 Os01g0919900 10.1094/MPMI-22-7-0820
  • Annotation
235 OsMADS51 Os01g0922800 10.1104/pp.107.103291
  • Annotated
236 se13 Os01g0949400 10.1007/s00122-010-1426-2
  • Complete loss of photoperiodic response in the rice mutant line X61 is caused by deWciency of phytochrome chromophore biosynthesis gene
237 LCD Os01g0956700 10.1093/jxb/err300
  • Low cadmium (LCD), a novel gene related to cadmium tolerance and accumulation in rice
238 cde1(t) Os02g0121000 10.1007/s00425-007-0525-z
  • Identification and fine mapping of a thermo-sensitive chlorophyll deficient mutant in rice (Oryza sativa L.)
239 nrat1 Os02g0131800 10.1073/pnas.1004949107
  • Annotated
240 lc2 Os02g0152500 10.1038/cr.2010.109
  • Annotated
241 Oscand1 Os02g0167700 10.1093/mp/ssq068
  • OsCAND1 Is Required for Crown Root Emergence in Rice
242 osgl1-2 Os02g0178800 10.1007/s11103-009-9483-0
  • Annotated
244 b-OsLCY Os02g0190600 10.1111/j.1365-313X.2008.03411.x
  • Mutations of genes in synthesis of the carotenoid precursors of ABA lead to pre-harvest sprouting and photo-oxidation in rice
245 Docs1 Os02g0236100 10.1111/j.1365-313X.2011.04824.x
  • A leucine-rich repeat receptor-like kinase gene is involved in the specification of outer cell layers in rice roots
246 ep3 Os02g0260200 10.1007/s00122-009-1151-x
  • Annotated
247 lp Os02g0260200 10.1111/j.1467-7652.2011.00610.x
  • Annotated
248 oscps1 Os02g0278700 10.1104/pp.103.033696
  • An Overview of Gibberellin Metabolism Enzyme Genes and Their Related Mutants in Rice
249 naat1 Os02g0306401 10.1104/pp.107.107912
  • Mutation in Nicotianamine Aminotransferase Stimulated the Fe(II) Acquisition System and Led to Iron Accumulation in Rice
250 api5 Os02g0313400 10.1105/tpc.110.082636
  • Annotated
251 cfl1 Os02g0516400 10.1105/tpc.111.088625
  • Annotated
252 osgtgamma-1 Os02g0542400 10.1007/s00438-009-0507-x
  • Systematic analysis of GT factor family of rice reveals a novel subfamily involved in stress responses
253 Oscyt-inv1 Os02g0550600 10.1007/s00425-008-0718-0
  • OsCYT-INV1 for alkaline/neutral invertase is involved in root cell development and reproductivity in rice (Oryza sativa L.)
254 cpt1 Os02g0568200 10.1105/tpc.104.028357
  • The Rice COLEOPTILE PHOTOTROPISM1 Gene Encoding an Ortholog of Arabidopsis NPH3 Is Required for Phototropism of Coleoptiles and Lateral Translocation of Auxin
255 rss1 Os02g0606700 10.1038/ncomms1279
  • Annotated
256 OsCOL4 Os02g0610500 10.1111/j.1365-313X.2010.04226.x
  • Annotated
257 du3 Os02g0612300 10.5511/plantbiotechnology.25.483
  • Du3, a mRNA cap-binding protein gene, regulates amylose content in Japonica rice seeds
258 bc14 Os02g0614100 10.1073/pnas.1016144108
  • Golgi nucleotide sugar transporter modulates cell wall biosynthesis and plant growth in rice
260 oul1 Os02g0674800 10.1104/pp.111.176016
  • Annotated
261 Roc5 Os02g0674800 10.1104/pp.111.176016
  • Annotated
262 mfo1 Os02g0682200 10.1105/tpc.109.068742
  • Annotated
263 osmads6 Os02g0682200 10.1111/j.1365-313X.2010.04354.x
  • Annotated
265 adl1 Os02g0709400 10.1016/j.ydbio.2009.07.042
  • Annotated
266 OsGS1;1 Os02g0735200 10.1111/j.1365-313X.2011.04506.x
  • Metabolomics data reveal a crucial role of cytosolic glutamine synthetase 1;1 in coordinating metabolic balance in rice
268 bc3 Os02g0738900 10.1007/s00425-010-1145-6
  • Annotated
269 dsm1 Os02g0743500 10.1104/pp.109.149856
  • Annotated
270 lsi1 Os02g0745100 10.1038/nature04590
  • A silicon transporter in rice
271 OsbZIP23 Os02g0766700 10.1104/pp.108.128199
  • Annotated
272 pps Os02g0771100 10.1105/tpc.111.083436
  • The COP1 Ortholog PPS Regulates the Juvenile–Adult and Vegetative–Reproductive Phase Changes in Rice
273 Ossgo1 Os02g0799100 10.1111/j.1365-313X.2011.04615.x
  • Annotated
274 Ospho1;2 Os02g0809800 10.1104/pp.109.149872
  • Characterization of the Rice PHO1 Gene Family Reveals a Key Role for OsPHO1;2 in Phosphate Homeostasis and the Evolution of a Distinct Clade in Dicotyledons
275 osmyoXIB Os02g0816900 10.1016/j.ydbio.2007.01.008
  • ORYZA SATIVA MYOSIN XI B controls pollen development by photoperiod-sensitive protein localizations
276 rtbp1 Os02g0817800 10.1105/tpc.107.051953
  • Suppression of RICE TELOMERE BINDING PROTEIN1 Results in Severe and Gradual Developmental Defects Accompanied by Genome Instability in Rice
277 lpa1 Os02g0819400 10.1007/s00122-008-0818-z
  • The rice OsLpa1 gene encodes a novel protein involved in phytic acid metabolism
278 dh1 Os02g0820500 10.1007/s11103-007-9283-3
  • DH1, a LOB domain-like protein required for glume formation in rice
279 Osa8 Os03g0100800 10.1093/jxb/ern298
  • Annotated
280 pair1 Os03g0106300 10.1105/tpc.020701
  • The Novel Gene HOMOLOGOUS PAIRING ABERRATION IN RICE MEIOSIS1 of Rice Encodes a Putative Coiled-Coil Protein Required for Homologous Chromosome Pairing in Meiosis
281 lsi2 Os03g0107300 10.1038/nature05964
  • An efflux transporter of silicon in rice
282 rim1 Os03g0119966 10.1111/j.1365-313X.2008.03712.x
  • Disruption of a novel gene for a NAC-domain protein in rice confers resistance to Rice dwarf virus
283 osmads50 Os03g0122600 10.1111/j.1365-313X.2004.02082.x
  • Annotated
284 dsm2 Os03g0125100 10.1104/pp.110.163741
  • Annotated
285 OsCYP96B4 Os03g0140400 10.1371/journal.pone.0028069
  • Annotated
286 XS-lpa2-1 Os03g0142800 10.1007/s00122-009-1018-1
  • Annotated
287 arl1 Os03g0149100 10.1111/j.1365-313X.2005.02434.x
  • Annotated
288 crl1 Os03g0149100 10.1105/tpc.105.030981
  • Annotated
289 OsEDR1 Os03g0160100 10.1111/j.1365-3040.2010.02219.x
  • OsEDR1 negatively regulates rice bacterial resistance via activation of ethylene biosynthesispce
290 oscow1 Os03g0162000 10.1007/s11103-007-9203-6
  • NARROW LEAF 7 controls leaf shape mediated by auxin in rice
291 nal7 Os03g0162000 10.1007/s00438-008-0328-3
  • NARROW LEAF 7 controls leaf shape mediated by auxin in rice
292 dpw Os03g0167600 10.1105/tpc.111.087528
  • Defective Pollen Wall Is Required for Anther and Microspore Development in Rice and Encodes a Fatty Acyl Carrier Protein Reductase
293 cyp704B2 Os03g0168600 10.1105/tpc.109.070326 Annotated Development
294 oni1 Os03g0181500 10.1111/j.1365-313X.2011.04530.x
  • Annotated
295 OsPDS Os03g0184000 10.1111/j.1365-313X.2008.03411.x
  • Mutations of genes in synthesis of the carotenoid precursors of ABA lead to pre-harvest sprouting and photo-oxidation in rice
296 gid2 Os03g0196500 10.1126/science.1081077
  • Accumulation of Phosphorylated Repressor for Gibberellin Signaling in an F-box Mutant
297 d88 Os03g0203200 10.1007/s11103-009-9522-x
  • Annotated
298 htd2 Os03g0203200 10.1007/s00425-009-0975-6
  • Annotated
299 d14 Os03g0203200 10.1093/pcp/pcp091
  • Annotated
300 dl Os03g0215200 10.1105/tpc.018044 Annotated
301 lhs1 Os03g0215400 10.1105/tpc.12.6.871
  • Annotated
302 OsFRDL1 Os03g0216700 10.1104/pp.108.128132
  • OsFRDL1 Is a Citrate Transporter Required for Efficient Translocation of Iron in Rice
303 dsm3 Os03g0230500 10.1007/s11103-011-9830-9
  • Annotated
304 Osapc6 Os03g0236966 10.1007/s10142-009-0155-6
  • A candidate gene OsAPC6 of anaphase-promoting complex of rice identified through T-DNA insertion
305 rcn1 Os03g0281900 10.1111/j.1469-8137.2008.02724.x
  • Annotated
306 mit Os03g0296800 10.1038/ncomms1326
  • The rice mitochondrial iron transporter is essential for plant growth
307 ssd1 Os03g0302900 10.2183/pjab.86.265
  • SSD1, which encodes a plant-specific novel protein, controls plant elongation by regulating cell division in rice
308 phyB Os03g0309200 10.1105/tpc.105.035899
  • Annotated
309 oscipk31 Os03g0319400 10.1007/s10059-010-0084-1 Annotated
310 v2 Os03g0320900 10.1111/j.1365-313X.2007.03251.x
  • The rice nuclear gene, VIRESCENT 2, is essential for chloroplast development and encodes a novel type of guanylate kinase targeted to plastids and mitochondria
311 OschlH Os03g0323200 10.1093/pcp/pcg064
  • Characterization of a Rice Chlorophyll-Deficient Mutant Using the T-DNA Gene-Trap System
312 glu1 Os03g0329500 10.1007/s11103-005-2972-x
  • Annotated
313 cwa1/bc1 Os03g0416200 10.1007/s00425-010-1171-4
  • Isolation of a novel cell wall architecture mutant of rice with defective Arabidopsis COBL4 ortholog BC1 required for regulated deposition of secondary cell wall components
314 glup4 Os03g0427300 10.1270/jsbbs.60.556
  • Characterization of the rice glup4 mutant suggests a role for the small GTPase Rab5 in the biosynthesis of carbon and nitrogen storage reserves in developing endosperm
315 OsAGO7 Os03g0449200 10.1007/s00425-006-0472-0
  • Annotated
316 shl4/sho2 Os03g0449200 10.1073/pnas.0704339104
  • Annotated
317 chl9 Os03g0563300 10.1007/s11103-006-9024-z
  • Rice Chlorina-1 and Chlorina-9 encode ChlD and ChlI subunits of Mg-chelatase, a key enzyme for chlorophyll synthesis and chloroplast development
318 pez1 Os03g0571900 10.1074/jbc.M111.221168
  • A Rice phenolic efflux transporter is essential for solubilizing precipitated apoplasmic iron in the plant stele
321 OsIAA11 Os03g0633500 10.1093/mp/ssr074
  • A Gain-of-Function Mutation in OsIAA11 Affects Lateral Root Development in Rice
322 Osam1 Os03g0650400 10.1038/cr.2011.7
  • OsAM1 is required for leptotene-zygotene transition in rice
323 nol1 Os03g0654600 10.1111/j.1365-313X.2008.03670.x
  • Two short-chain dehydrogenase/reductases, NON-YELLOW COLORING 1 and NYC1-LIKE, are required for chlorophyll b and light-harvesting complex II degradation during senescence in rice
324 v1 Os03g0656900 10.1111/j.1365-313X.2011.04755.x
  • Annotated
325 crl4 Os03g0666100 10.3117/plantroot.2.19
  • CRL4 regulates crown root formation through auxin transport in rice
327 fc1/OsTB1 Os03g0706500 10.1046/j.1365-313X.2003.01648.x
  • Annotated
328 slr1 Os03g0707600 10.1105/tpc.13.5.999
  • Annotated
329 Slr1-d Os03g0707600 10.1007/s00438-008-0406-6
  • Annotated
330 phyA Os03g0719800 10.1105/tpc.105.035899
  • Distinct and Cooperative Functions of Phytochromes A, B, and C in the Control of Deetiolation and Flowering in Rice
331 OsMIK Os03g52760 10.1007/s00122-008-0863-7
  • Isolation and characterization of a low phytic acid rice mutant reveals a mutation in the rice orthologue of maize MIK
332 phyC Os03g0752100 10.1105/tpc.105.035899
  • Distinct and Cooperative Functions of Phytochromes A, B, and C in the Control of Deetiolation and Flowering in Rice
333 pap2 Os03g0753100 10.1093/pcp/pcp166
  • Annotated
334 osmads34 Os03g0753100 10.1104/pp.110.156711
  • Annotated
335 pho1 Os03g0758100 10.1105/tpc.107.054007
  • Mutation of the Plastidial a-Glucan Phosphorylase Gene in Rice Affects the Synthesis and Structure of Starch in the Endosperm
336 bel Os03g0760200 10.1007/s11103-006-0058-z
  • Annotated
337 DST Os03g0786400 10.1101/gad.1812409
  • Annotated
338 pla3/gp Os03g0790600 10.1111/j.1365-313X.2009.03841.x
  • PLASTOCHRON3/GOLIATH encodes a glutamate carboxypeptidase required for proper development in rice
339 el1 Os03g0793500 10.1038/emboj.2010.75
  • Annotated
340 chl1 Os03g0811100 10.1007/s11103-006-9024-z
  • Annotated
341 OsIDS1 Os03g0818800 10.1111/j.1365-313X.2011.04804.x
  • Two AP2 family genes, SUPERNUMERARY BRACT (SNB) and OsINDETERMINATE SPIKELET 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice
342 Xb15 Os03g0821300 10.1371/journal.pbio.0060231
  • Rice XB15, a Protein Phosphatase 2C, Negatively Regulates Cell Death and XA21-Mediated Innate Immunity Chang
343 Os-castor Os03g0843600 10.1104/pp.108.131540
  • Antiquity and Function of CASTOR and POLLUX, the Twin Ion Channel-Encoding Genes Key to the Evolution of Root Symbioses in Plants
345 etr2 Os04g0169100 10.1105/tpc.108.065391
  • The Ethylene Receptor ETR2 Delays Floral Transition and Affects Starch Accumulation in Rice
346 OsYSL6 Os04g0390500 10.1104/pp.111.186031 * OsYSL6 Is Involved in the Detoxification of Excess Manganese in Rice1[W][OA]
347 lax2 Os04g0396500 10.1105/tpc.111.088765
  • LAX PANICLE2 of rice encodes a novel nuclear protein and regulates the formation of axillary meristems
348 ACL1 Os04g0415000 10.1093/mp/ssq022
  • Annotated
349 zep1 Os04g0452500 10.1105/tpc.109.070789
  • Annotated
350 tdd1 Os04g0463500 10.1111/j.1365-313X.2009.03952.x
  • A rice tryptophan deficient dwarf mutant, tdd1, contains a reduced level of indole acetic acid and develops abnormal flowers and organless embryos
351 d11 Os04g0469800 10.1105/tpc.104.024950
  • Annotated
352 OsGLU3 Os04g0497200 10.1093/mp/ssr084
  • OsGLU3, a putative membrane-bound endo-1,4-beta-glucanase, is required for root cell elongation and division in rice (Oryza sativa L.)
353 OsDCL4 Os04g0509300 10.1105/tpc.107.052209
  • Oryza sativa Dicer-like4 Reveals a Key Role for Small Interfering RNA Silencing in Plant Development
355 TOB1 Os04g0536300 10.1105/tpc.111.094797
  • The YABBY Gene TONGARI-BOUSHI1 Is Involved in Lateral Organ Development and Maintenance of Meristem Organization in the Rice Spikelet
356 Osvpe1 Os04g0537900 10.1111/j.1365-313X.2009.03801.x
  • The vacuolar processing enzyme OsVPE1 is required for efficient glutelin processing in rice
357 d17 Os04g0550600 10.1038/nature07272
  • Inhibition of shoot branching by new terpenoid plant hormones
359 OsCPK12 Os04g0560600 10.1111/j.1365-313X.2011.04766.x
  • Annotated
360 glr3.1 Os04g0585200 10.1105/tpc.105.037713
  • Annotated
361 apo2 Os04g0598300 10.1111/j.1365-313X.2011.04781.x
  • ABERRANT PANICLE ORGANIZATION 2/RFL, the rice ortholog of Arabidopsis LEAFY, suppresses the transition from inflorescence meristem to floral meristem through interaction with APO1
362 rlin1 Os04g0610800 10.1016/j.jcg.2010.12.001
  • RLIN1, encoding a putative coproporphyrinogen III oxidase, is involved in lesion initiation in rice
363 osks1 Os04g0611800 10.1104/pp.103.033696
  • An Overview of Gibberellin Metabolism Enzyme Genes and Their Related Mutants in Rice
364 fc1 Os04g0612700 10.1007/s11103-008-9448-8
  • FLEXIBLE CULM 1 encoding a cinnamyl-alcohol dehydrogenase controls culm mechanical strength in rice
366 ili1 Os04g0641700 10.1105/tpc.109.070441
  • Antagonistic HLH/bHLH Transcription Factors Mediate Brassinosteroid Regulation of Cell Elongation and Plant Development in Rice and Arabidopsis
367 flo2 Os04g0645100 10.1105/tpc.109.070821
  • Annotation
368 OsCP1 Os04g0670500 10.1023/B:PLAN.0000040904.15329.29
  • Isolation and characterization of a rice cysteine protease gene, OsCP1, using T-DNA gene-trap system
369 OsARF12 Os04g0671900 10.1111/j.1469-8137.2011.03910.x
  • Annotation
370 OsMKP1 Os05g0115800 10.1093/pcp/pcm007
  • A Calmodulin-Binding Mitogen-Activated Protein Kinase Phosphatase is Induced by Wounding and Regulates the Activities of Stress-Related Mitogen-Activated Protein Kinases in Rice
371 rsr1 Os05g0121600 10.1104/pp.110.159517
  • Coexpression Analysis Identifies Rice Starch Regulator1, a Rice AP2/EREBP Family Transcription Factor, as a Novel Rice Starch Biosynthesis Regulator1
372 siz1 Os05g0125000 10.1111/j.1469-8137.2010.03538.x
  • Annotation
373 srs3 Os05g0154700 10.1093/pcp/pcq092
  • Annotation
374 bc10 Os05g0170000 10.1111/j.1365-313X.2008.03703.x
  • BC10, a DUF266-containing and Golgi-located type II membrane protein, is required for cell-wall biosynthesis in rice (Oryza sativa L.)
375 mads58 Os05g0203800 10.1105/tpc.111.087262
  •  ??Rice MADS6 Interacts with the Floral Homeotic Genes SUPERWOMAN1, MADS3, MADS58, MADS13, and DROOPING LEAF in Specifying Floral Organ Identities and Meristem Fate
376 d1 Os05g0333200 10.1073/pnas.96.18.10284
  • Annotation
377 ygl1 Os05g0349700 10.1104/pp.107.100321
  • Annotation
378 OsImpβ1 Os05g0353400 10.1007/s10059-011-2321-7
  • Rice Importin β1 Gene Affects Pollen Tube Elongation
379 osbc1l4 Os05g0386800 10.1007/s11103-009-9537-3
  • Molecular characterization, expression pattern, and function analysis of the OsBC1L family in rice
380 flo4 Os05g0405000 10.1111/j.1365-313X.2005.02423.x
  • White-core endosperm floury endosperm-4 in rice is generated by knockout mutations in the C4-type pyruvate orthophosphate dikinase gene (OsPPDKB)
382 gid1 Os05g0407500 10.1038/nature04028
  • Annotation
383 DNG701 Os05g0446000 10.1073/pnas.1112704108
  • A 5-methylcytosine DNA glycosylase/lyase demethylates the retrotransposon Tos17 and promotes its transposition in rice
384 bgl Os05g0454200 10.1007/s11103-011-9839-0
  • The rice bright green leaf (bgl) locus encodes OsRopGEF10, which activates the development of small cuticular papillae on leaf surfaces
385 oszip5 Os05g0472700 10.1007/s11103-010-9637-0
  • OsZIP5 is a plasma membrane zinc transporter in rice
386 eui1 Os05g0482400 10.1093/pcp/pci233
  • Annotation
389 spl7 Os05g0530400 10.1073/pnas.112209199
  • Annotation
390 snrk1a Os05g0530500 10.1105/tpc.105.037887
  • The SnRK1A Protein Kinase Plays a Key Role in Sugar Signaling during Germination and Seedling Growth of Rice
391 ltn1 Os05g0557700 10.1104/pp.110.170209
  • Annotated
392 nl1 Os05g0578900 10.1038/cr.2009.36
  • NECK LEAF 1, a GATA type transcription factor, modulates organogenesis by regulating the expression of multiple regulatory genes during reproductive development in rice
393 Osrec8 Os05g0580500 10.1104/pp.111.177428
  • Annotated
394 osjar1 Os05g0586200 10.1111/j.1365-3040.2008.01790.x
  • Annotated
395 Osexpa17 Os06g0108600 10.1111/j.1365-313X.2011.04533.x
  • Root hair-specific expansins modulate root hair elongation in rice
398 zn Os06g0116400 10.1111/j.1365-313X.2010.04183.x
  • ZEBRA-NECROSIS, a thylakoid-bound protein, is critical for the photoprotection of developing chloroplasts during early leaf development
399 osbbi1 Os06g0125800 10.1038/cr.2011.4
  • Annotated
400 d62/dlt Os06g0127800 10.1007/s00425-010-1263-1
  • Annotated
402 sik1 Os06g0130100 10.1111/j.1365-313X.2010.04146.x
  • Annotated
403 dp1 Os06g0136900 10.1016/j.ydbio.2011.08.023
  • An AT-hook gene is required for palea formation and floral organ number control in rice
404 d3 Os06g0154200 10.1093/pcp/pci022
  • Suppression of Tiller Bud Activity in Tillering Dwarf Mutants of Rice
405 OsSSI Os06g0160700 10.1104/pp.105.071845
  • Annotated
406 v3 Os06g0168600 10.1104/pp.109.136648
  • Rice Virescent3 and Stripe1 Encoding the Large and Small Subunits of Ribonucleotide Reductase Are Required for Chloroplast Biogenesis during Early Leaf Development
407 aid1 Os06g0181300 10.1104/pp.104.041459
  • The ANTHER INDEHISCENCE1 Gene Encoding a Single MYB Domain Protein Is Involved in Anther Development in Rice
408 abl1 Os06g0211200 10.1104/pp.111.173427
  • Annotated
409 Osabf2 Os06g0211200 10.1016/j.jplph.2010.05.008
  • Annotated
410 lsi6 Os06g0228200 10.1105/tpc.108.059311
  • A Transporter Regulating Silicon Distribution in Rice Shoots
411 st1 Os06g0257450 10.1104/pp.109.136648
  • Rice Virescent3 and Stripe1 Encoding the Large and Small Subunits of Ribonucleotide Reductase Are Required for Chloroplast Biogenesis during Early Leaf Development
412 nyc3 Os06g0354700 10.1111/j.1365-313X.2009.03919.x
  • Defect in non-yellow coloring 3, an a/b hydrolase-fold family protein, causes a stay-green phenotype during leaf senescence in rice
413 d35 Os06g0569500 10.1023/B:PLAN.0000038261.21060.47
  • Annotated
414 OsIAA23 Os06g0597000 10.1111/j.1365-313X.2011.04698.x
  • Annotated
415 se5 Os06g0603000 10.1046/j.1365-313X.2000.00753.x
  • Annotated
416 moc1 Os06g0610350 10.1038/nature01518
  • Annotated
417 spp Os06g0625400 10.1093/pcp/pcq012
  • A Rice Stromal Processing Peptidase Regulates Chloroplast and Root Development
418 apo1 Os06g0665400 10.1111/j.1365-313X.2007.03200.x
  • Rice ABERRANT PANICLE ORGANIZATION 1, encoding an F-box protein, regulates meristem fate
419 oshma9 Os06g0665800 10.1104/pp.107.102236
  • Annotated
420 dep3 Os06g0677000 10.1007/s00122-011-1543-6
  • Fine mapping and candidate gene analysis of dense and erect panicle 3, DEP3, which confers high grain yield in rice (Oryza sativa L.)
421 star1 Os06g0695800 10.1105/tpc.108.064543
  • Annotated
422 OsHMA2 Os06g0700700 10.1093/pcp/pcr166
  • Annotated
423 oshkt2;1 Os06g0701700 10.1038/sj.emboj.7601732
  • Annotated
424 spw1 Os06g0712700 10.1242/dev.00294
  • Annotated
425 fon1 Os06g0717200 10.1242/dev.01441
  • The gene FLORAL ORGAN NUMBER1 regulates floral meristem size in rice and encodes a leucine-rich repeat receptor kinase orthologous to Arabidopsis CLAVATA1
426 ila1 Os06g0724900 10.1105/tpc.111.093419
  • Annotated
427 GA2ox5 Os07g0103500 10.1105/tpc.108.060913
  • A Novel Class of Gibberellin 2-Oxidases Control Semidwarfism, Tillering, and Root Development in Rice
428 crl5 Os07g0124700 10.1111/j.1365-313X.2011.04610.x * Finished
429 g1 Os07g0139300 10.1073/pnas.0907896106
  • The homeotic gene long sterile lemma (G1) specifies sterile lemma identity in the rice spikelet
430 waf1 Os07g0164000 10.1104/pp.110.160234
  • Annotated
431 osku70 Os07g0184900 10.1104/pp.109.150391
  • OsKu70 Is Associated with Developmental Growth and Genome Stability in Rice
432 OsPHF1 Os07g0187700 10.1104/pp.111.181669
  • OsPHF1 Regulates the Plasma Membrane Localization of Low- and High-Affinity Inorganic Phosphate Transporters and Determines Inorganic Phosphate Uptake and Translocation in Rice
433 STR2 Os07g0191600 10.1111/j.1365-313X.2011.04842.x
  • The half-size ABC transporters STR1 and STR2 are indispensable for mycorrhizal arbuscule formation in rice
434 OsZDS Os07g0204900 10.1111/j.1365-313X.2008.03411.x
  • Mutations of genes in synthesis of the carotenoid precursors of ABA lead to pre-harvest sprouting and photo-oxidation in rice
435 sh-h Os07g0207700 10.1111/j.1365-313X.2009.04039.x
  • Inactivation of the CTD phosphatase-like gene OsCPL1 enhances the development of the abscission layer and seed shattering in rice
436 OsZIP8 Os07g0232800 10.1007/s10059-010-0069-0
  • Zinc Deficiency-Inducible OsZIP8 Encodes a Plasma Membrane-Localized Zinc Transporter in Rice
437 snb Os07g0235800 10.1111/j.1365-313X.2006.02941.x
  • The rice heterochronic gene SUPERNUMERARY BRACT regulates the transition from spikelet meristem to floral meristem
438 oscbt Os07g0490200 10.1007/s10059-009-0081-4
  • The Calmodulin-Binding Transcription Factor OsCBT Suppresses Defense Responses to Pathogens in Rice
439 oswrky78 Os07g0583700 10.1007/s00425-011-1423-y
  • The WRKY transcription factor OsWRKY78 regulates stem elongation and seed development in rice
440 bui1 Os07g0596300 10.1105/tpc.110.081802
  • Annotated
441 dep2 Os07g0616000 10.1038/cr.2010.69
  • Annotated
442 srs1 Os07g0616000 10.1266/ggs.85.327
  • Annotated
445 rth1 Os07g0682800 10.1270/jsbbs.59.13
  • Annotated
446 wox11 Os07g0684900 10.1105/tpc.108.061655
  • The WUSCHEL-Related Homeobox Gene WOX11 Is Required to Activate Shoot-Borne Crown Root Development in Rice
447 OsNAS3 Os07g0689600 10.1073/pnas.0910950106
  • Iron fortification of rice seeds through activation of the nicotianamine synthase gene
448 ehd3 Os08g0105000 10.1111/j.1365-313X.2011.04517.x
  • Annotated
449 pss1 Os08g0117000 10.1105/tpc.109.073692
  • Annotated
450 cyp703a3 Os08g0131100 10.1105/tpc.108.062935
  • Annotated
451 crr6 Os08g0167500 10.1111/j.1365-313X.2011.04747.x
  • Annotated
453 ss3a Os08g0191433 10.1093/jxb/err125
  • Annotated
454 osagps2 Os08g0345800 10.1007/s11103-007-9153-z
  • Annotated
455 GF14c Os08g0430500 10.1093/pcp/pcp012
  • The 14-3-3 Protein GF14c Acts as a Negative Regulator of Flowering in Rice by Interacting with the Florigen Hd3a
456 coe1 Os08g0442700 10.1111/j.1365-313X.2010.04250.x
  • COE1, an LRR–RLK responsible for commissural vein pattern formation in rice
457 bc12 Os09g0114500 10.1111/j.1365-313X.2010.04238.x
  • Annotated
458 gdd1 Os09g0114500 10.1105/tpc.110.081901
  • Annotated
459 sll1 Os09g0395300 10.1105/tpc.108.061457
  • Annotated
460 rl9 Os09g0395300 10.1007/s11103-008-9365-x
  • Annotated
461 STR1 Os09g0401100 10.1111/j.1365-313X.2011.04842.x
  • Annotated
462 rep1 Os09g0410500 10.1104/pp.108.128231
  • RETARDED PALEA1 Controls Palea Development and Floral Zygomorphy in Rice
463 bc6 Os09g0422500 10.1093/jxb/erq395
  • Annotated
464 OsCesA9 Os09g0422500 10.1104/pp.103.022442
  • Annotated
465 osgl1-1 Os09g0426800 10.1093/mp/ssr028
  • Annotated
466 wsl2 Os09g0426800 10.1007/s00425-011-1481-1
  • Annotated
470 PTC1 Os09g0449000 10.1104/pp.111.175760
  • Annotated
471 aco1 Os09g0451000 10.1111/j.1365-3040.2009.02106.x
  • ACO1, a gene for aminocyclopropane-1-carboxylate oxidase: effects on internode elongation at the heading stage in rice
472 isa3 Os09g0469400 10.1093/pcp/pcr058
  • Rice Debranching Enzyme Isoamylase3 Facilitates Starch Metabolism and Affects Plastid Morphogenesis
473 gna1 Os09g0488000 10.1104/pp.104.058248
  • A Novel Short-Root Gene Encodes a Glucosamine-6-Phosphate Acetyltransferase Required for Maintaining Normal Root Cell Shape in Rice
474 PAIR2 Os09g0506800 10.1007/s00438-003-0934-z
  • An insertional mutation in the rice PAIR2 gene, the ortholog of Arabidopsis ASY1, results in a defect in homologous chromosome pairing during meiosis
475 sgr Os09g0532000 10.1105/tpc.106.044891
  • The Senescence-Induced Staygreen Protein Regulates Chlorophyll Degradation
476 OsAT1/Spl18 Os10g0195600 10.1007/s11103-006-9130-y
  • Isolation and molecular characterization of a Spotted leaf 18 mutant by modified activation-tagging in rice
477 brd2 Os10g0397400 10.1105/tpc.105.030973
  • Annotated
478 pla1 Os10g0403000 10.1073/pnas.2636936100
  • Annotated
479 pair3 Os10g0405500 10.1111/j.1365-313X.2009.03870.x
  • Annotated
480 ehd2 Os10g0419200 10.1104/pp.108.125542
  • Annotated
481 rid1 Os10g0419200 10.1073/pnas.0806019105
  • Annotated
482 OsCesA7 Os10g0467800 10.1104/pp.103.022442
  • Annotated
483 wda1 Os10g0471100 10.1105/tpc.106.042044
  • Wax-deficient anther1 Is Involved in Cuticle and Wax Production in Rice Anther Walls and Is Required for Pollen Development
484 OsMPK6 Os10g0533600 10.1007/s00425-007-0541-z
  • Annotated
485 OsCAO1 Os10g0567200 10.1007/s11103-005-2066-9
  • Annotated
486 cao Os10g0567400 10.1270/jsbbs.55.361
  • Annotated
487 jmj6 Os10g0577600 10.1073/pnas.0805901105
  • Annotated
488 OsCSLD1 Os10g0578200 10.1104/pp.106.091546
  • OsCSLD1, a Cellulose Synthase-Like D1 Gene, Is Required for Root Hair Morphogenesis in Rice
489 phot1a Os11g0102200 10.1007/s11103-008-9442-1
  • Rice phot1a mutation reduces plant growth by affecting photosynthetic responses to light during early seedling growth
490 OsPK1 Os11g0148500 10.1007/s00425-011-1471-3
  • Annotated
491 PDIL1 Os11g0199200 10.1093/jxb/err262
  • The failure to express a protein disulphide isomerase-like protein results in a floury endosperm and an endoplasmic reticulum stress response in rice
492 rad Os11g0210300 10.1270/jsbbs.56.69
  • Annotated
493 sp1 Os11g0235200 10.1111/j.1365-313X.2009.03799.x
  • Annotated
494 Tid1 Os11g0247300 10.1266/ggs.84.209
  • Annotated
495 nls1-1D Os11g0249000 10.1111/j.1365-313X.2011.04557.x
  • Annotated
496 lazy1 Os11g0490600 10.1038/cr.2007.38
  • Annotated
497 osarf1 Os11g0523800 10.1007/s11103-009-9474-1
  • Annotated
498 tld1-D Os11g0528700 10.1104/pp.109.146803
  • Altered Architecture and Enhanced Drought Tolerance in Rice via the Down-Regulation of Indole-3-Acetic Acid by TLD1/OsGH3.13 Activation
501 d27 Os11g0587000 10.1105/tpc.109.065987
  • Annotated
502 fon2 Os11g0595400 10.1093/pcp/pcl025
  • Conservation and Diversification of Meristem Maintenance Mechanism in Oryza sativa: Function of the FLORAL ORGAN NUMBER2 Gene
503 wdl1 Os11g0708400 10.1007/s11103-010-9656-x
  • Mutation in Wilted Dwarf and Lethal 1 (WDL1) causes abnormal cuticle formation and rapid water loss in rice
504 rip1 Os12g0132400 10.1093/pcp/pcl013
  • Rice Immature Pollen 1 (RIP1) is a Regulator of Late Pollen Development
505 art1 Os12g0170400 10.1105/tpc.109.070771
  • A Zinc Finger Transcription Factor ART1 Regulates Multiple Genes Implicated in Aluminum Tolerance in Rice
506 OsMADS13 Os12g0207000 10.1111/j.1365-313X.2007.03272.x
  • The D-lineage MADS-box gene OsMADS13 controls ovule identity in rice
507 ogr1 Os12g0270200 10.1111/j.1365-313X.2009.03909.x
  • Rice OGR1 encodes a pentatricopeptide repeat–DYW protein and is essential for RNA editing in mitochondria
508 osatg10b Os12g0506800 10.1007/s10059-009-0006-2
  • Annotated
509 kch1 Os12g0547500 10.1093/jxb/erq164
  • A kinesin with calponin-homology domain is involved in premitotic nuclear migration
513 spl11 Os12g0570000 10.1105/tpc.108.058610
  • SPIN1, a K Homology Domain Protein Negatively Regulated and Ubiquitinated by the E3 Ubiquitin Ligase SPL11, Is Involved in Flowering Time Control in Rice
514 mel2 Os12g0572800 10.1371/journal.pgen.1001265
  • A Novel RNA-Recognition-Motif Protein Is Required for Premeiotic G1/S-Phase Transition in Rice (Oryza sativa L.)
515 gpa1 Os12g0631100 10.1111/j.1365-313X.2010.04370.x
  • OsRab5a regulates endomembrane organization and storage protein trafficking in rice endosperm cells
516 ossut2 Os12g0641400 10.1104/pp.111.176982
  • Annotated
517 d18 Os01g0177400 10.1073/pnas.141239398
  • Annotated
518 Gn1a Os01g0197700 10.1126/science.1113373
  • Cytokinin Oxidase Regulates Rice Grain Production
520 SKC1 Os01g0307500 10.1038/ng1643
  • Annotated
521 PSR Os01g0357100 10.1073/pnas.0504220102
  • Isolation of a rice regeneration quantitative trait loci gene and its application to transformation systems
522 SaF Os01g0578500 10.1073/pnas.0810108105
  • Annotated
523 SaM Os01g0578700 10.1073/pnas.0810108105
  • Hybrid male sterility in rice controlled by interaction between divergent alleles of two adjacent genes
524 Rd Os01g0633500 10.1111/j.1365-313X.2006.02958.x
  • The Rc and Rd genes are involved in proanthocyanidin synthesis in rice pericarp
525 Pi37 Os01g0781700 10.1534/genetics.107.080648
  • The Blast Resistance Gene Pi37 Encodes a Nucleotide Binding Site–Leucine-Rich Repeat Protein and Is a Member of a Resistance Gene Cluster on Rice Chromosome 1
526 qSH1 Os01g0848400 10.1126/science.1126410
  • Annotated
527 qNPQ1-2 Os01g0869800 10.1073/pnas.1104809108 Finished
528 sd1 Os01g0883800 10.1038/416701a
  • Annotated
529 GW2 Os02g0244100 10.1038/ng2014
  • Annotated
530 Rf2 Os02g0274000 10.1111/j.1365-313X.2010.04427.x
  • The fertility restorer gene, Rf2, for Lead Rice-type cytoplasmic male sterility of rice encodes a mitochondrial glycine-rich protein
531 hbd2 Os02g0622100 10.1007/s00438-010-0514-y
  • Annotated
532 Pib Os02g0818450 10.1046/j.1365-313X.1999.00498.x
  • The Pib gene for rice blast resistance belongs to the nucleotide binding and leucine-rich repeat class of plant disease resistance genes
533 qLTG3?1 Os03g0103300 10.1073/pnas.0805303105
  • Annotated
534 dth3 Os03g0122600 10.1007/s00299-011-1129-4
  • Annotated
535 GS3 Os03g0407400 10.1007/s00122-006-0218-1
  • Annotated
536 GRP162 Os03g0641300 10.1105/tpc.111.093211
  • The Rice Pentatricopeptide Repeat Protein RF5 Restores Fertility in Hong-Lian Cytoplasmic Male-Sterile Lines via a Complex with the Glycine-Rich Protein GRP162
537 LOX-3 Os03g0700400 10.1007/s12374-013-0085-7
  • Molecular genetic characterization of rice seed lipoxygenase 3 and assessment of its effects on seed longevity
538 Hd6 Os03g0762000 10.1073/pnas.111136798
  • Annotated
539 Bph14 Os03g0848700 10.1073/pnas.0912139106
  • Annotated
541 Pi21 Os04g0401000 10.1126/science.1175550
  • Annotated
542 GIF1 Os04g0413500 10.1038/ng.220
  • Annotated
543 Rf17 Os04g0475900 10.1073/pnas.0901860106
  • Suppressed expression of RETROGRADE-REGULATED MALE STERILITY restores pollen fertility in cytoplasmic male sterile rice plants
544 BET1 Os04g0477300 10.1104/pp.110.171470
  • Suppression of a NAC-Like Transcription Factor Gene Improves Boron-Toxicity Tolerance in Rice
545 OSB2 Os04g0557500 10.1093/pcp/pce128
  • The Purple leaf (Pl) Locus of Rice: the Plw Allele has a Complex Organization and Includes Two Genes Encoding Basic Helix-Loop-Helix Proteins Involved in Anthocyanin Biosynthesis
546 OSB1 Os04g0557800 10.1093/pcp/pce128
  • The Purple leaf (Pl) Locus of Rice: the Plw Allele has a Complex Organization and Includes Two Genes Encoding Basic Helix-Loop-Helix Proteins Involved in Anthocyanin Biosynthesis
547 Xa1 Os04g0622600 10.1073/pnas.95.4.1663
  • Annotated
548 sh4 Os04g0670900 10.1126/science.1123604
  • Rice Domestication by Reducing Shattering
549 Xa5 Os05g0107700 10.1094/MPMI.2004.17.12.1348
  • Annotated
550 GS5 Os05g0158500 10.1038/ng.977
  • Annotated
551 GW5 DQ991205 10.1038/cr.2008.307
  • Isolation and initial characterization of GW5, a major QTL associated with rice grain width and weight
552 qSW5 AB433345_DQ991205 10.1038/ng.169
  • Deletion in a gene associated with grain size increased yields during rice domestication
553 wx Os06g0133000 10.1046/j.1365-313X.1995.7040613.x
  • Annotated
554 Hd3a Os06g0157700 10.1093/pcp/pcf156
  • Annotated
555 DPL2 Os06g0184100 10.1073/pnas.1003124107
  • Rice pollen hybrid incompatibility caused by reciprocal gene loss of duplicated genes
556 S5 Os06g0213100 10.1073/pnas.0804761105
  • A triallelic system of S5 is a major regulator of the reproductive barrier and compatibility of indica–japonica hybrids in rice
557 ALK Os06g0229800 10.1111/j.1744-7909.2011.01065.x
  • Annotated
558 Hd1 Os06g0275000 10.1105/tpc.12.12.2473
  • Annotated
559 Pi2 Os06g0286700 10.1094/MPMI-19-1216
  • Annotated
560 Pi9 Os06g0286700 10.1534/genetics.105.044891
  • Annotated
561 Pi25 Os06g0330100 10.1016/j.jgg.2011.03.010
  • Annotated
562 Pid3 Os06g0330100 10.1534/genetics.109.102871
  • Annotated
563 Pi-d2 Os06g0494100 10.1111/j.1365-313X.2006.02739.x
  • Annotated
564 Xa27 Os06g0598900 10.1038/nature03630
  • R gene expression induced by a type-III effector triggers disease resistance in rice
566 PROG1 Os07g0153600 10.1038/ng.197
  • Control of a key transition from prostrate to erect growth in rice domestication
567 Rc Os07g0211500 10.1105/tpc.105.038430
  • Caught Red-Handed: Rc Encodes a Basic Helix-Loop-Helix Protein Conditioning Red Pericarp in Rice
569 OsHMA3 Os07g0232900 10.1073/pnas.1005396107
  • Annotated
571 Ghd7 Os07g0261200 10.1038/ng.143
  • Annotated
572 Sdr4 Os07g0585700 10.1073/pnas.0911965107
  • Annotated
573 Pi36 Os08g0150100 10.1534/genetics.107.075465
  • The in Silico Map-Based Cloning of Pi36, a Rice Coiled-Coil–Nucleotide-Binding Site–Leucine-Rich Repeat Gene That Confers Race-Specific Resistance to the Blast Fungus
574 DTH8 Os08g0174500 10.1104/pp.110.156943
  • Annotated
578 Badh2 Os08g0424500 10.1105/tpc.108.058917
  • Annotated
579 WFP Os08g0509600 10.1038/ng.592
  • Annotated
580 IPA1 Os08g0509600 10.1038/ng.591
  • Annotated
581 xa13 Os08g0535200 10.1101/gad.1416306
  • Annotated
582 Sub1A AAZ06207 10.1038/nature04920
  • Sub1A is an ethylene-response-factor-like gene that confers submergence tolerance to rice
584 DEP1 Os09g0441900 10.1038/ng.352
  • Annotated
585 TAC1 Os09g0529300 10.1111/j.1365-313X.2007.03284.x
  • Annotated
586 CPDphotolyase Os10g0167600 10.1093/pcp/pch215
  • Annotated
588 Ehd1 Os10g0463400 10.1101/gad.1189604
  • Ehd1, a B-type response regulator in rice, confers short-day promotion of flowering and controls FT-like gene expression independently of Hd1
589 RF1A Os10g0497300 10.1105/tpc.105.038240
  • Annotated
591 Rf-1 Os10g0497432 10.1046/j.1365-313X.2003.01961.x
  • Map-based cloning of a fertility restorer gene, Rf-1, in rice (Oryza sativa L.)
592 RF1B Os10g0499500 10.1105/tpc.105.038240
  • Cytoplasmic Male Sterility of Rice with Boro II Cytoplasm Is Caused by a Cytotoxic Peptide and Is Restored by Two Related PPR Motif Genes via Distinct Modes of mRNA Silencing
593 Pia Os11g0225100 10.1111/j.1365-313X.2011.04502.x
  • Annotated
594 Xa21 Os11g0559200 10.1126/science.270.5243.1804
  • Annotated
595 Pb1 Os11g0598500 10.1111/j.1365-313X.2010.04348.x
  • Durable panicle blast-resistance gene Pb1 encodes an atypical CC-NBS-LRR protein and was generated by acquiring a promoter through local genome duplication
596 Pik1 Os11g0687800 10.1111/j.1469-8137.2010.03462.x
  • The isolation and characterization of Pik, a rice blast resistance gene which emerged after rice domestication
597 Pik2 Os11g0687900 10.1111/j.1469-8137.2010.03462.x
  • The isolation and characterization of Pik, a rice blast resistance gene which emerged after rice domestication
599 Pik-p Os11g0689100 10.1007/s00122-010-1506-3
  • The Pik-p resistance to Magnaporthe oryzae in rice is mediated by a pair of closely linked CC-NBS-LRR genes
600 Xa3 Os11g0692300 10.1007/s00122-006-0388-x
  • Annotated
601 Xa26 Os11g0692300 10.1046/j.1365-313X.2003.01976.x Xa26, a gene conferring resistance to Xanthomonas oryzae pv. oryzae in rice, encodes an LRR receptor kinase-like protein
602 Pi-ta Os12g0281300 10.1105/tpc.12.11.2033 A Single Amino Acid Difference Distinguishes Resistant and Susceptible Alleles of the Rice Blast Resistance Gene Pi-ta
606 OsCOIN Os01g0104100 10.1007/s00425-007-0548-5 Finished
607 OsIRL Os01g0106400 10.1111/j.1399-3054.2009.01290.x Finished
609 OsDREB2A Os01g0165000 10.1007/s10529-011-0620-x Finished
610 OsIAA1 Os01g0178500 10.1007/s11103-009-9474-1 Annotated
611 OsCDR1 Os01g0178600 10.1094/MPMI-22-12-1635 Finished
613 NH1 Os01g0194300 10.1094/MPMI-18-0511 Annotated
614 OsRAA1 Os01g0257300 10.1104/pp.104.041996 Annotated
615 CYP734A6 Os01g0388000 10.1111/j.1365-313X.2011.04567.x Finished
616 OsWRKY11 Os01g0626400 10.1007/s00299-008-0614-x Annotated
617-1 SLRL1 Os01g0646300 10.1111/j.1365-313X.2005.02562.x Finished
617-2 SLRL2 Os05g0574900 10.1111/j.1365-313X.2005.02562.x Finished
618 RACK1A Os01g0686800 10.1105/tpc.107.054395 Annotated
619 OsWRKY13 Os01g0750100 10.1094/MPMI-20-5-0492 Finished
620 OsKAT1 Os01g0756700 10.1104/pp.107.101154 Annotated
621 OsCIPK12 Os01g0759400 10.1104/pp.107.101295 Annotated
623 GH3-2 Os01g0764800 10.1104/pp.110.163774 Annotated
624 OsGH3.1 Os01g0785400 10.1094/MPMI-22-2-0201 Finished
626 AP37 Os01g0797600 10.1104/pp.109.137554 Finished
627 ZFP179 Os01g0839100 10.1093/jxb/erq120 Annotated
628 OsMYB3R-2 Os01g0841500 10.1104/pp.108.133454 Finished
630 SAPK4 Os01g0869900 10.1186/1471-2229-8-49 Finished
631 SNAC2 Os01g0884300 10.1007/s11103-008-9309-5 Finished
633 OsDREB1F Os01g0968800 10.1007/s11103-008-9340-6 Annotated
635 BiP Os02g0115900 10.1093/pcp/pcp098 Finished
636 BiP3 Os02g0115900 10.1371/journal.pone.0009262 Finished
637 OsRacB Os02g0120800 10.1016/j.plaphy.2005.12.001 Finished
638 OsCYP2 Os02g0121300 10.1186/1471-2229-11-34 Finished
639 OsMAPK33 Os02g0148100 10.1007/s12038-011-9002-8 Annotated
641 OsWRKY71 Os02g0181300 10.1016/j.jplph.2006.07.006 Finished
642 OsAGAP Os02g0198300 10.1111/j.1365-313X.2006.02898.x Annotated
645 RCN2 Os02g0531600 10.1046/j.1365-313X.2002.01255.x Annotated
647 OsTPP1 Os02g0661100 10.1007/s00425-008-0729-x Annotated
648 MAIF1 Os02g0671100 10.1093/mp/ssq066 Finished
649 SBPase Os02g0698000 10.1007/s00299-006-0299-y Finished
650 OsFAD2 Os02g0716500 10.1007/s11032-011-9587-5 Finished
651 OsHAP3E Os02g0725700 10.1016/j.plantsci.2011.04.009 Finished
652 OsSKIPa Os02g0759800 10.1073/pnas.0901940106 Finished
653 Orysa;KRP1 Os02g0762400 10.1104/pp.106.087056 Finished
654 mtHsp70 Os02g0774300 10.1016/j.febslet.2010.11.051 Finished
657 RWC3 Os02g0823100 10.1093/pcp/pch058 Finished
658 CDPK13 Os03g0128700 10.1007/s00438-007-0220-6 Annotated
659 OsCDPK13 Os03g0128700 10.1007/s11103-004-1178-y Annotated
661 OsTIFY11a Os03g0180800 10.1007/s11103-009-9524-8 Annotated
662 GS1;2 Os03g0223400 10.1007/s00299-008-0665-z Annotated
666 sHSP17.7 Os03g0267200 10.1007/s00299-007-0470-0 Annotated
667 OsSDIR1 Os03g0272300 10.1007/s11103-011-9775-z Annotated
668 OsAPXa Os03g0285700 10.1007/s00299-010-0985-7 Finished
669 OsCIPK03 Os03g0319400 10.1104/pp.107.101295 Annotated
671 OsIPT2 Os03g0356900 10.1104/pp.106.085811 Annotated
674 OSH1 Os03g0727000 10.1105/tpc.5.9.1039 Finished
675 OsbHLH148 Os03g0741100 10.1111/j.1365-313X.2010.04477.x Annotated
676 OSH43 Os03g0771500 10.1006/dbio.2000.9624 Finished
677 OsIPT4 Os03g0810100 10.1104/pp.106.085811 Finished
678 SNAC1 Os03g0815100 10.1073/pnas.0604882103 Annotated
680 ZFP182 Os03g0820300 10.1016/j.bbaexp.2007.02.006 Annotated
685 OsOxi1 Os04g0488700 10.1093/pcp/pcq132 Annotated
686 OsRDCP1 Os04g0530500 10.1016/j.plantsci.2011.02.008 Annotated
687 OsDREB1E Os04g0572400 10.1007/s10529-008-9811-5 Finished
688 OsCDPK7 Os04g0584600 10.1046/j.1365-313x.2000.00787.x Annotated
689 OsAP2-39 Os04g0610400 10.1371/journal.pone.0025216 Finished
690 ostgap1 Os04g0637000 10.1074/jbc.M109.036871 Finished
691 GS2 Os04g0659100 10.1023/A:1006408712416 Finished
692 OsRR6 Os04g0673300 10.1093/pcp/pcm022 Finished
694 OSH71 Os05g0129700 10.1006/dbio.2000.9624 Finished
695 OsLti6b Os05g0138300 10.1007/s00299-006-0297-0 Annotated
696 OsPYL/RCAR5 Os05g0213500 10.1093/jxb/err338 Annotated
698 OsWRKY53 Os05g0343400 10.1016/j.bbaexp.2007.04.006 Finished
699 OsDREB2B Os05g0346200 10.1007/s10529-008-9811-5 Finished
700 DEPG1 Os05g0365300 10.1007/s11033-011-1122-6 Over-expression in the nucleotide-binding site-leucine rich repeat gene DEPG1 increases susceptibility to bacterial leaf streak disease in transgenic rice plants Susceptibility to Biotic Stress
701 Gns1 Os05g0375400 10.1023/A:1020714426540 Characterization of transgenic rice plants over-expressing the stress-inducible beta-glucanase gene Gns1
702 OsISA2 Os05g0393700 10.1104/pp.111.173435 Functional diversity of isoamylase oligomers: the ISA1 homo-oligomer is essential for amylopectin biosynthesis in rice endosperm
703 OsTPS1 Os05g0518600 10.1007/s00425-011-1458-0 Overexpression of the trehalose-6-phosphate synthase gene OsTPS1 enhances abiotic stress tolerance in rice Abiotic stress
704 OsLEA3-1 Os05g0542500 10.1007/s00122-007-0538-9 Annotated
705-1 OsIPT7 Os05g0551700 10.1104/pp.106.085811 Finished
705-2 OsIPT5 Os07g0211700 10.1104/pp.106.085811 Finished
705-3 OsIPT4 Os03g0810100 10.1104/pp.106.085811 Finished
705-4 OsIPT2 Os03g0356900 10.1104/pp.106.085811 Finished
705-5 OsIPT8 Os01g0688300 10.1104/pp.106.085811 Finished
705-6 OsIPT10 Os06g0729800 10.1104/pp.106.085811 Finished
706 OsRAN2 Os05g0574500 10.1111/j.1365-3040.2010.02225.x Annotated
707 OsHDT1 Os05g0597100 10.1371/journal.pone.0021789 Annotated
708 OsDREB1C Os06g0127100 10.1093/pcp/pci230 Annotated
709 OsENOD93-1 Os06g0142350 10.1111/j.1365-3040.2009.02032.x Annotated
710 OsPTF1 Os06g0193400 10.1104/pp.105.063115 Annotated
711 bu1 Os06g0226500 10.1104/pp.109.140806 Finished
712 HOX1a Os06g0229300 10.1111/j.1744-7909.2011.01075.x Finished
713 OsGLK1 Os06g0348800 10.1093/pcp/pcp138 Annotated
714-1 OsHDAC1 Os06g0583400 10.1046/j.1365-313X.2003.01650.x Finished
714-2 OsHDAC2 Os02g0215200 10.1046/j.1365-313X.2003.01650.x Finished
714-3 OsHDAC3 Os02g0214900 10.1046/j.1365-313X.2003.01650.x Finished
715 CYP734A4 Os06g0600400 10.1111/j.1365-313X.2011.04567.x Finished
716 OsSPX1 Os06g0603600 10.1111/j.1365-313X.2008.03734.x Finished
717 OsiSAP8 Os06g0612800 10.1007/s11103-007-9284-2 Finished
718 OVP1 Os06g0644200 10.1016/j.plaphy.2010.09.014 Finished
721 YK1 Os06g0651100 10.1023/A:1019275218830 Finished
722 OsPIN2 Os06g0660200 10.1111/j.1467-7652.2011.00637.x Finished
723-1 OSH1 Os03g0727000 10.1006/dbio.2000.9624 Finished
723-2 OSH15 Os07g0129700 10.1006/dbio.2000.9624 Finished
723-3 OSH43 Os03g0771500 10.1006/dbio.2000.9624 Finished
723-4 OSH6 Os01g0302500 10.1006/dbio.2000.9624 Finished
723-5 OSH71 Os05g0129700 10.1006/dbio.2000.9624 Finished
725 OsNek3 Os07g0176600 10.1093/pcp/pcp026 Finished
726 OsNRAMP1 Os07g0258400 10.1093/jxb/err136 Finished
727 OsPHR2 Os07g0438800 10.1104/pp.107.111443 Finished
728 CrtintP1 Os07g0498800 10.1007/s00438-007-0220-6 Finished
729 GH3-8 Os07g0592600 10.1105/tpc.107.055657 Finished
730 OsMADS18 Os07g0605200 10.1104/pp.104.045039 Finished
731 OsNHX1 Os07g0666900 10.1093/pcp/pch014 Finished
733 OsGAPC3 Os08g0126300 10.1007/s11240-011-9950-6 Finished
735 OsDOG Os08g0504700 10.1016/j.jplph.2010.12.013 Finished
737 OsCPK21 Os08g0540400 10.1007/s11103-010-9717-1 Finished
740 OsCO3 Os09g0240200 10.1007/s00425-008-0742-0 Finished
741 OsWRKY76 Os09g0417600 10.1007/s12284-010-9039-6 Finished
743 OsbZIP72 Os09g0456200 10.1007/s00425-008-0857-3 Finished
744 OsEATB Os09g0457900 10.1104/pp.111.179945 Finished
745 Oshox4 Os09g0470500 10.1007/s11103-007-9270-8 Finished
746 OsTFX1 Os09g0474000 10.1073/pnas.0701742104 Finished
747 RF2a Os09g0516200 10.1073/pnas.0810303105 Finished
748 OsDREB1B Os09g0522000 10.1093/pcp/pci230 Finished
749 OsDREB1A Os09g0522200 10.1093/pcp/pci230 Finished
750 OsPIP2;7 Os09g0541000 10.1093/pcp/pcn166 Finished
751 SAUR39 Os09g0545300 10.1104/pp.109.143875 Finished
753-1 OsSPX1 Os06g0603600 10.1111/j.1744-7909.2009.00834.x Annotated
753-2 OsSPX2 Os02g0202200 10.1111/j.1744-7909.2009.00834.x Annotated
753 OsSPX3 Os10g0392600 10.1111/j.1744-7909.2009.00834.x Annotated
753 OsSPX4 Os03g0827500 10.1111/j.1744-7909.2009.00834.x Annotated
753 OsSPX5 Os03g0406100 10.1111/j.1744-7909.2009.00834.x Annotated
753 OsSPX6 Os07g0614700 10.1111/j.1744-7909.2009.00834.x Annotated
754 OsiICK6 Os10g0471700 10.1093/aob/mcr057 Finished
755 OsMADS56 Os10g0536100 10.1111/j.1365-3040.2009.02008.x Finished
756 MYBS3 Os10g0561400 10.1104/pp.110.153015 Annotated
757 OsMSRA4.1 Os10g0563600 10.1007/s00425-009-0934-2 Annotated
758 Rir1b Os10g0569400 10.1023/A:1006423232753 Finished
759 WOX3 Os11g0102100 10.1104/pp.107.095737 Annotated
760 OsCIPK15 Os11g0113700 10.1104/pp.107.101295 Finished
761 OsNAC10 Os11g0126900 10.1104/pp.110.154773 Finished
762 ONAC045 Os11g0127600 10.1016/j.bbrc.2008.12.163 Finished
763 RCN1 Os11g0152500 10.1046/j.1365-313X.2002.01255.x Annotated
764 OsAsr1 Os11g0167800 10.1007/s10059-009-0055-6 Annotated
765-1 OsPR4a Os11g0592200 10.1016/j.jplph.2011.07.013 Finished
765-2 OsPR4b Os11g0592100 10.1016/j.jplph.2011.07.013 Finished
765-3 OsPR4c Os11g0592000 10.1016/j.jplph.2011.07.013 Finished
765-4 OsPR4d Os11g0591800 10.1016/j.jplph.2011.07.013 Finished
765-5 OsPR4e Os11g0592200 10.1016/j.jplph.2011.07.013 Finished
766 OsMT1a Os11g0704500 10.1007/s11103-009-9466-1 Finished
767 OsWAK1 Os11g0690066 10.1007/s11103-008-9430-5 Annotated
768 ZFP252 Os12g0583700 10.1016/j.febslet.2008.02.052 Finished
769 OsPID Os12g0614600 10.1093/pcp/pcm024 Finished
771 OsTLP27 Os01g0102300 10.1016/j.plantsci.2012.06.006 Finished
772 OsHsp17.0 Os01g0136200 10.1016/j.jplph.2011.12.014 Finished
775 OsMKK6 Os01g0510100 10.1016/j.jplph.2011.11.012 Finished
776 OsRDR6 Os01g0527600 10.1111/j.1365-313X.2012.05001.x Finished
777 RAD51C Os01g0578000 10.1093/jxb/ers190 Finished
779 CFO1 Os01g0726400 10.1104/pp.112.200980 Finished
780 OsPAP10a Os01g0776600 10.1111/j.1744-7909.2012.01143.x Finished
782 OsCOI1 Os01g0853400 10.1371/journal.pone.0036214 Finished
783 OsMGT1 Os01g0869200 10.1104/pp.112.199778 Finished
784 PsbS Os01g0869800 10.1111/j.1365-313X.2012.04995.x Finished
785 OsHPL3 Os02g0110200 10.1111/j.1365-313X.2012.05027.x Finished
786 MADS29 Os02g0170300 10.1105/tpc.111.094854 Finished
787 MTR1 Os02g0491300 10.1016/j.devcel.2012.04.011 Finished
788 cry1a Os02g0573200 10.1093/pcp/pcs097 Finished
788-2 cry1b Os04g0452100 10.1093/pcp/pcs097 Finished
789 OsABC1-2 Os02g0575500 10.1016/j.gene.2012.02.017 Finished
791 OsHk6 Os02g0738400 10.1093/pcp/pcs079 Finished
1227 OsHk3 Os01g0923700 10.1093/pcp/pcs079 Finished
1228 OsHk4 Os03g0717700 10.1093/pcp/pcs079 Finished
792 D50 Os02g0477700 10.1111/j.1365-3040.2012.02534.x Finished
793 th1 Os02g0811000 10.1007/s11103-011-9868-8 Annotated
794 osdrm2 Os03g0110800 10.1111/j.1365-313X.2012.04974.x Targeted disruption of an orthologue of DOMAINS REARRANGED METHYLASE 2, OsDRM2, impairs the growth of rice plants by abnormal DNA methylation
795 te Os03g0123300 10.1038/ncomms1716 Finished
796 OsMYB2 Os03g0315400 10.1093/jxb/err431 The rice Os03g0315400 was reported as OsMYB2 in 2012 [1] by researchers from China.
797 OsCam1-1 Os03g0319300 10.1007/s12374-011-0154-8 The rice Os03g0319300 was reported as OsCam1-1 in 2012 [1] by researchers from Thailand.
798 OsLEA3-2 Os03g0322900 10.1371/journal.pone.0045117 OsLEA3-2, an Abiotic Stress Induced Gene of Rice Plays a Key Role in Salt and Drought Tolerance
800 ysa Os03g0597200 10.1104/pp.112.195081 Disruption of a Rice Pentatricopeptide Repeat Protein Causes a Seedling-Specific Albino Phenotype and Its Utilization to Enhance Seed Purity in Hybrid Rice Production
801 OsSh1 Os03g0650000 10.1038/ng.2281 Parallel domestication of the Shattering1 genes in cereals
802 OsSWAP70A Os03g0666200 10.1111/j.1365-313X.2011.04874.x Annotated
803 OsDDM1b Os03g0722400 10.1007/s00438-012-0717-5 DDM1 (Decrease in DNA Methylation) genes in rice (Oryza sativa)
804 OsDDM1a Os09g0442700 10.1007/s00438-012-0717-5 DDM1 (Decrease in DNA Methylation) genes in rice (Oryza sativa)
806 OsPIL1 Os03g0782500 10.1073/pnas.1207324109 Annotated
807 gh1 Os03g0819600 10.1007/s00425-012-1598-x A mutation in the rice chalcone isomerase gene causes the golden hull and internode 1 phenotype
808 OsPT1 Os03g0150600 10.1104/pp.112.196345 A Constitutive Expressed Phosphate Transporter, OsPht1;1, Modulates Phosphate Uptake and Translocation in Phosphate-Replete Rice
810 OsVIT1 Os04g0463400 10.1111/j.1365-313X.2012.05088.x Annotated
811 YSL16 Os04g0542800 10.1105/tpc.112.103820 Annotated
812 cZOGT1 Os04g0556500 10.1104/pp.112.196733 Cytokinin Activity of cis-Zeatin and Phenotypic Alterations Induced by Overexpression of Putative cis-Zeatin-O-glucosyltransferase in Rice
813 cZOGT2 Os04g0556600 10.1104/pp.112.196733 Cytokinin Activity of cis-Zeatin and Phenotypic Alterations Induced by Overexpression of Putative cis-Zeatin-O-glucosyltransferase in Rice
1026 cZOGT3 Os04g0565400 10.1104/pp.112.196733 Cytokinin Activity of cis-Zeatin and Phenotypic Alterations Induced by Overexpression of Putative cis-Zeatin-O-glucosyltransferase in Rice
814 xiao Os04g0576900 10.1111/j.1365-313X.2011.04877.x XIAO is involved in the control of organ size by contributing to the regulation of signaling and homeostasis of brassino steroids and cell cycling in rice
815 MPR25 Os04g0602600 10.1111/j.1365-313X.2012.05091.x Annotated
816 shat1 Os04g0649100 10.1105/tpc.111.094383 Genetic Control of Seed Shattering in Rice by the APETALA2 Transcription Factor SHATTERING ABORTION1
817 SLAC1 Os04g0674700 10.1093/jxb/ers216 Increased leaf photosynthesis caused by elevated stomatal conductance in a rice mutant deficient in SLAC1, a guard cell anion channel protein
819 OsMYB2P-1 1 Os05g0140100 10.1104/pp.112.194217 OsMYB2P-1, an R2R3 MYB Transcription Factor, Is Involved in the Regulation of Phosphate-Starvation Responses and Root Architecture in Rice
820 OsSYP71 Os05g0553700 10.1016/j.gene.2012.05.011 Overexpression of the Qc-SNARE gene OsSYP71 enhances tolerance to oxidative stress and resistance to rice blast in rice
821 HDT701 Os05g0597100 10.1105/tpc.112.101972 HDT701, a Histone H4 Deacetylase, Negatively Regulates Plant Innate Immunity by Modulating Histone H4 Acetylation of Defense-Related Genes in Rice
822 OsELF3-1 Os06g0142600 10.1371/journal.pone.0043705 Annotated
823 Hd17 Os06g0142600 10.1093/pcp/pcs028 Natural Variation in Hd17, a Homolog of Arabidopsis ELF3 That is Involved in Rice Photoperiodic Flowering
825 LYP6 Os06g0208800 10.1105/tpc.112.102475 Annotated
826 OsbZIP46 Os06g0211200 10.1104/pp.111.190389 Constitutive Activation of Transcription Factor OsbZIP46 Improves Drought Tolerance in Rice
830 RPL1 Os06g0245600 10.1093/mp/ssr091 RPL1, a Gene Involved in Epigenetic Processes Regulates Phenotypic Plasticity in Rice
831 OsHSBP2 Os06g0274000 10.1093/jxb/ers245 Functional analysis of OsHSBP1 and OsHSBP2 revealed
1027 OsHSBP1 Os09g0375100 10.1093/jxb/ers245 Functional analysis of OsHSBP1 and OsHSBP2 revealed
832 OsMIOX Os06g0561000 10.1016/j.plantsci.2012.08.003 Annotated
833 SE5 Os06g0603000 10.1007/s11103-012-9945-7 Annotated
834 OsCOM1 Os06g0613400 10.1111/j.1365-313X.2012.05025.x The role of OsCOM1 in homologous chromosome synapsis and recombination in rice meiosis
835 OsbZIP52/RISBZ5 Os06g0662200 10.1007/s00425-011-1564-z Annotated
836 SRL1 Os07g0102300 10.1104/pp.112.199968 Annotated
837 MADS15 Os07g0108900 10.1105/tpc.112.097105 Annotated
840 OsSWAP70B Os07g0138100 10.1111/j.1365-313X.2011.04874.x SWAP70 functions as a Rac/Rop guanine nucleotide-exchange factor in rice
841 spl5 Os07g0203700 10.1007/s11032-011-9677-4 SPL5, a cell death and defense-related gene, encodes a putative splicing factor 3b subunit 3 (SF3b3) in rice
842 Nramp5 Os07g0257200 10.1105/tpc.112.096925 Annotated
843 OsCHR4 Os07g0497000 10.1007/s00425-012-1667-1 Molecular cloning and characterization of OsCHR4, a rice chromatin-remodeling factor required for early chloroplast development in adaxial mesophyll
844 chr729 Os07g0497100 10.1073/pnas.1203148109 CHD3 protein recognizes and regulates methylated histone H3 lysines 4 and 27 over a subset of targets in the rice genome
845 OSRIP18 Os07g0556800 10.1007/s11248-011-9568-9 Annotated
846 ObgC Os07g0669200 10.1111/j.1365-313X.2012.04976.x Functional characterization of ObgC in ribosome biogenesis during chloroplast development
847 cslf6 Os08g0160500 10.1104/pp.112.195495 Loss of Cellulose Synthase-Like F6 Function Affects Mixed-Linkage Glucan Deposition, Cell Wall Mechanical Properties, and Defense Responses in Vegetative Tissues of Rice
848 OsLIS-L1 Os08g0162100 10.1007/s00425-011-1532-7 Annotated
851 WRKY30 Os08g0499300 10.1007/s00425-012-1668-0 Annotated
852 Orysa;CDKB2;1 Os08g0512600 10.1111/j.1365-313X.2011.04847.x CDKB2 is involved in mitosis and DNA damage response in rice
853 qGW8 Os08g0531600 10.1038/ng.2327 Annotated
854 SDG724 Os09g0307800 10.1105/tpc.112.101436 Annotated
856 OsVIT2 Os09g0396900 10.1111/j.1365-313X.2012.05088.x Annotated
857 OsDDM1a Os09g0442700 10.1007/s00438-012-0717-5 Annotated
858 LYP4 Os09g0452200 10.1105/tpc.112.102475 Annotated
859 BC15/OsCTL1 Os09g0494200 10.1104/pp.112.195529 Annotated
860 LGD1 Os09g0502100 10.1111/j.1365-313X.2012.04989.x Annotated
861 BSR1 Os09g0533600 10.1111/j.1467-7652.2010.00568.x Screening for resistance against Pseudomonas syringae in rice-FOX Arabidopsis lines identified a putative receptor-like cytoplasmic kinase gene that confers resistance to major bacterial and fungal pathogens in Arabidopsis and rice. Resistance
862 OsLDC-like 1 Os09g0547500 10.1007/s10059-012-0067-5 Increased Polyamine Biosynthesis Enhances Stress Tolerance by Preventing the Accumulation of Reactive Oxygen Species: T-DNA Mutational Analysis of Oryza sativa Lysine Decarboxylase-like Protein 1
863 OsDEES1 Os09g0561600 10.1104/pp.112.203943 Annotated
864 OsFbx352 Os10g0127900 10.1093/jxb/ers206 Annotated
865 rl14 Os10g0558900 10.1111/j.1467-7652.2012.00679.x Annotated
866 ospk1 Os11g0148500 10.1007/s11105-011-0386-2 Downregulation of OsPK1 Contributes to Oxidative Stress and the Variations in ABA/GA Balance in Rice
867 MIL2 Os12g0152500 10.1111/j.1469-8137.2012.04270.x MIL2 (MICROSPORELESS2) regulates early cell differentiation in the rice anther
868 PSTOL1 BAK26566 10.1038/nature11346
869 p/tms12-1 smRNA615912 10.1038/cr.2012.28
870 OsHsp23.7 Os12g0569700 10.1016/j.jplph.2011.12.014 Annotated
871 Amy1A Os02g0765600 10.1111/j.1467-7652.2012.00741.x Annotated Suppression of a-amylase genes improves quality of rice grain ripened under high temperature
872 Amy2A Os06g0713800 10.1111/j.1467-7652.2012.00741.x Suppression of a-amylase genes improves quality of rice grain ripened under high temperature
873 Amy3A Os09g0457400 10.1111/j.1467-7652.2012.00741.x Suppression of a-amylase genes improves quality of rice grain ripened under high temperature
874 Amy3B Os09g0457600 10.1111/j.1467-7652.2012.00741.x Suppression of a-amylase genes improves quality of rice grain ripened under high temperature
1236 Amy3C Os09g0457800 10.1111/j.1467-7652.2012.00741.x Suppression of a-amylase genes improves quality of rice grain ripened under high temperature
1237 Amy3D Os08g0473900 10.1111/j.1467-7652.2012.00741.x Suppression of a-amylase genes improves quality of rice grain ripened under high temperature
1238 Amy3E Os08g0473600 10.1111/j.1467-7652.2012.00741.x Suppression of a-amylase genes improves quality of rice grain ripened under high temperature
875 ylc1 Os09g0380200 10.1007/s00425-012-1756-1 Young Leaf Chlorosis 1, a chloroplast-localized gene required for chlorophyll and lu
878 OsIAGLU Os03g0693600 10.1007/s12374-012-0238-0 Tiller Formation in Rice is Altered by Overexpression of OsIAGLU Gene Encoding an IAA-conjugating Enzyme or Exogenous Treatment of Free IAA
879 OsOAT Os03g0643300 10.1016/j.plantsci.2012.09.002 Annotated
1230 OsAPS1 Os09g0298200 10.1071/FP12186 Gene Expression of ADP-glucose Pyrophosphorylase and Starch Contents in Rice Cultured Cells are Cooperatively Regulated by Sucrose and ABA
1231 OsAPS2 Os08g0345800 10.1071/FP12186 Gene Expression of ADP-glucose Pyrophosphorylase and Starch Contents in Rice Cultured Cells are Cooperatively Regulated by Sucrose and ABA
1232 OsAGPL1 Os03g0735000 10.1071/FP12186 Gene Expression of ADP-glucose Pyrophosphorylase and Starch Contents in Rice Cultured Cells are Cooperatively Regulated by Sucrose and ABA
1234 OsAPL3 Os05g0580000 10.1071/FP12186 Gene Expression of ADP-glucose Pyrophosphorylase and Starch Contents in Rice Cultured Cells are Cooperatively Regulated by Sucrose and ABA
1235 OsAPL4 Os07g0243200 10.1071/FP12186 Gene Expression of ADP-glucose Pyrophosphorylase and Starch Contents in Rice Cultured Cells are Cooperatively Regulated by Sucrose and ABA
881 OsGH3-2 Os01g0764800 10.1093/jxb/ers300 Annotated
882 OsDMI3 Os05g0489900 10.1093/mp/sss068 Annotated
883 Psi?LDMAR Os12g0545900 10.1093/mp/sss095 Annotated
884 OsJAZ8 Os09g0439200 10.1093/pcp/pcs145 Annotated
885 Osj10gBTF3 Os10g0483000 10.1093/pcp/pcs146 Inhibition of a Basal Transcription Factor 3-Like Gene Osj10gBTF3 in Rice Results in Significant Plant Miniaturization and Typical Pollen Abortion
886 LPA1 Os03g0237250 10.1104/pp.112.208496 Annotated
887 PT11 Os01g0657100 10.1105/tpc.112.104901 Nonredundant Regulation of Rice Arbuscular Mycorrhizal Symbiosis by Two Members of the PHOSPHATE TRANSPORTER1 Gene Family
888 PT13 Os04g0186800 10.1105/tpc.112.104901 Nonredundant Regulation of Rice Arbuscular Mycorrhizal Symbiosis by Two Members of the PHOSPHATE TRANSPORTER1 Gene Family
889 OsMYB55 Os05g0553400 10.1371/journal.pone.0052030 Annotated
890 DDF1 Os06g0138700 10.1111/j.1365-313X.2012.05126.x Dwarf and deformed flower 1, encoding an F‐box protein, is critical for vegetative and floral development in rice (Oryza sativa L.)
891 OsPIN3t Os01g0643300 10.1111/j.1365-313X.2012.05121.x Annotated
892 OsbHLH133 Os12g0508500 10.1111/j.1365-3040.2012.02569.x Identification of OsbHLH133 as a regulator of iron distribution between roots and shoots in Oryza sativa
893 PGR5 Os08g0566600 10.1093/pcp/pcs153 PGR5-Dependent Cyclic Electron Transport Around PSI Contributes to the Redox Homeostasis in Chloroplasts Rather Than CO2 Fixation and Biomass Production in Rice
894 OsNRT2.3a Os01g0704100 10.1104/pp.112.204461 Annotated
895 bls1 Os02g0811000 10.1007/s11105-012-0480-0 BEAK LIKE SPIKELET1 is Required for Lateral Development of Lemma and Palea in Ri
896 UIP1 Os02g0818000 10.1007/s11816-012-0239-y Transgenic overexpression of UIP1, an interactor of the 3 0 untranslated region of the Rubisco small subunit mRNA, increases rice tolerance to drought
897 OrbHLH001 Os01g0928000 10.1016/j.jplph.2012.08.019 Annotated
898 CSA Os01g0274800 10.1073/pnas.1213041110 Annotated
899 qGL3 Os03g0646900 10.1073/pnas.1219776110 Annotated
900 OsPPKL2 Os05g0144400 10.1073/pnas.1219776110 Rare allele of OsPPKL1 associated with grain length causes extra-large grain and a significant yield increase in rice
901 OsPPKL3 Os12g0617900 10.1073/pnas.1219776110 Rare allele of OsPPKL1 associated with grain length causes extra-large grain and a significant yield increase in rice
902 OsSRO1c Os03g0230300 10.1093/jxb/ers349
  • Annotated
903 OsGT1 Os01g0262600 10.1104/pp.112.210948
  • Annotated
904 FIE1 Os08g0137250 10.1105/tpc.112.102269
  • Annotated
905 APIP6 Os05g0154600 10.1105/tpc.112.105429 The Magnaporthe oryzae Effector AvrPiz-t Targets the RING E3 Ubiquitin Ligase APIP6 to Suppress Pathogen Associated Molecular Pattern–Triggered Immunity in Rice
906 BRK1 Os07g0508500 10.1105/tpc.112.105874 BRK1, a Bub1-Related Kinase, Is Essential for Generating Proper Tension between Homologous Kinetochores at Metaphase I of Rice Meiosis
907 OsARG Os04g0106300 10.1111/j.1365-313x.2012.05122.x
  • Annotated
908 DEC Os12g0465700 10.1111/j.1365-313x.2012.05123.x Rice DECUSSATE controls phyllotaxy by affecting the cytokinin signaling pathway
909 OsIDD10 Os04g0566400 10.1111/nph.12075 Regulatory role of indeterminate domain 10 (IDD10) in ammonium-dependent gene expression in rice roots
910 OsARF16 Os06g0196700 10.1111/pce.12001
  • Annotated
911 OsMADS29 Os02g0170300 10.1371/journal.pone.0051435 Annotated
912 OsPDCD5 Os05g0547850 10.1007/s11032-012-9793-9 Annotated
913 OsCDPK1 Os03g0128700 10.1007/s11103-012-0006-z Annotated
914 PDA1 Os06g0607700 10.1007/s12374-013-0902-z Annotated
915 JMJ703 Os05g0196500 10.1073/pnas.1217020110 Annotated
916 OsVIL2 Os02g0152500 10.1111/tpj.12057 OsVIL2 functions with PRC2 to induce flowering by repressing OsLFL1 in rice
917 AIP1 Os01g0125800 10.1111/tpj.12065 Oryza sativa actin-interacting protein 1 is required for rice growth by promoting actin turnover
918 Xb25 Os09g0513000 10.1111/tpj.12076 The XA21 binding protein XB25 is required for maintaining XA21-mediated disease resistance
919 DTH2 Os02g0724000 10.1073/pnas.1213962110 Annotated
920 reg1 Os03g0786400 10.1073/pnas.1300359110 Annotated
924 fgl Os10g0496900 10.1111/tpj.12110 Annotated
925 Ehd4 Os03g0112700 10.1371/journal.pgen.1003281 Annotated
926 GnTI Os02g0833000 10.1111/tpj.12087 N-glycan maturation is crucial for cytokinin-mediated development and cellulose synthesis in Oryza sativa
927 OsFH1 Os01g0897700 10.1007-s00425-013-1838-8 Annotated
928 moc2 Os01g0866400 10.5511/plantbiotechnology.12.1210a Rice monoculm mutation moc2, which inhibits outgrowth of the second tillers, is ascribed to lack of a fructose-1,6-bisphosphatase
929 OsHsfA7 Os01g0571300 10.5483/BMBRep.2013.46.1.090 Annotated
930 OsPIANK1 Os11g0182500 10.1371/journal.pone.0059699 Functional Analysis and Expressional Characterization of Rice Ankyrin Repeat-Containing Protein, OsPIANK1, in Basal Defense against Magnaporthe oryzae Attack
931 OsFIE2 Os08g0137100 10.1371/journal.pgen.1003322 Annotated
933 OsORC3 Os10g0402200 10.1111/tpj.12126 OsORC3 is required for lateral root development in rice
934 OsAOC Os03g0438100 10.1111/tpj.12115 Identification of rice Allene Oxide Cyclase mutants and the function of jasmonate for defence against Magnaporthe oryzae
935 OsSNDP1 Os10g0122600 10.1007-s11103-013-0033-4 OsSNDP1, a Sec14-nodulin domain-containing protein, plays a critical role in root hair elongation in rice
936 OsRP1L1 Os05g0365300 10.1007-s11105-012-0537-0 Annotated
937 OsVPS22 Os09g0529700 10.1007/s11033-012-2422-1 Knockout of the VPS22 component of the ESCRT-II complex in rice (Oryza sativa L.) causes chalky endosperm and early seedling lethality
938 OsTZF1 Os05g0195200 10.1104/pp.112.205385 Annotated
939 OsAt10 Os06g0594700 10.1104/pp.112.208694 Overexpression of a BAHD Acyltransferase, OsAt10, Alters Rice Cell Wall Hydroxycinnamic Acid Content and Saccharification
940 Cga1 Os02g0220400 10.1104/pp.113.217265 Annotated
941 nal2 Os11g0102100 10.1111/nph.12231 A WUSCHEL-LIKE HOMEOBOX Gene Represses a YABBY Gene Expression Required for Rice Leaf Development
942 nal3 Os12g0101600 10.1111/nph.12231 Annotated
943 OsPTR9 Os06g0706400 10.1111/pbi.12031 Annotated
944 OsDHAR1 Os05g0116100 10.1007/s00425-013-1862-8 Homologous expression of cytosolic dehydroascorbate reductase increases grain yield and biomass under paddy field conditions in transgenic rice
945 ASR1 Os11g0167800 10.1007/s10059-013-0036-7 Annotated
946 ASR3 Os02g0543000 10.1007/s10059-013-0036-7 Abiotic Stress Responsive Rice ASR1 and ASR3 Exhibit Different Tissue-Dependent Sugar and Hormone-Sensitivities
947 OsDIL1 Os10g0148000 10.1007/s11103-013-0057-9 Annotated
948 SLL1 Os04g0379900 10.1016/j.plantsci.2013.01.003 SLL1, which encodes a member of the stearoyl-acyl carrier protein fatty acid desaturase family, is involve
949 Oscyp71Z2 Os07g0217600 10.1016/j.plantsci.2013.02.005 Oscyp71Z2 involves diterpenoid phytoalexin biosynthesis that contributes to bacterial blight resistance in rice
950 OsGPX3 Os02g0664000 10.1016/j.plantsci.2013.03.017 The mitochondrial glutathione peroxidase GPX3 is essential for H 2 O 2 homeostasis and root and shoot development in rice
951 OsGS1;2 Os03g0223400 10.1093/pcp/pct046 Annotated
952 MSF1 Os05g0497200 10.1104/pp.113.216044 Annotated
953 CAP1 Os02g0141300 10.1104/pp.113.216523 Annotated
954 glup6 Os03g0262900 10.1104/pp.113.217869 Annotated
955 OsGDCH Os10g0516100 10.1111/pce.12078 Knockdown of GDCH gene reveals reactive oxygen species-induced leaf senescence in rice
956 RGA4 Os11g0225100 10.1105/tpc.112.107201 Annotated
957 RGA5 Os11g0225300 10.1105/tpc.112.10720 The Rice Resistance Protein Pair RGA4/RGA5 Recognizes the Magnaporthe oryzae Effectors AVR-Pia and AVR1-CO39 by Direct Binding
958 LOX3 Os03g0700400 10.1007/s12374-013-0085-7 Molecular Genetic Characterization of Rice Seed Lipoxygenase 3 and Assessment of Its Effects on Seed Longevity
959 Sar1a Os01g0338000 10.1093/jxb/ert128 Small GTPase Sar1 is crucial for proglutelin and α-globulin export from the endoplasmic reticulum in rice endosperm
960 Sar1b Os12g0560300 10.1093/jxb/ert128 Small GTPase Sar1 is crucial for proglutelin and α-globulin export from the endoplasmic reticulum in rice endosperm
961 Sar1c Os01g0254000 10.1093/jxb/ert128 Small GTPase Sar1 is crucial for proglutelin and α-globulin export from the endoplasmic reticulum in rice endosperm
961 Sar1d Os06g0225000 10.1093/jxb/ert128 Small GTPase Sar1 is crucial for proglutelin and α-globulin export from the endoplasmic reticulum in rice endosperm
962 vyl Os03g0411500 10.1104/pp.113.217604 Annotated
963 SERF1 Os05g0420300 10.1105/tpc.113.113068 SALT-RESPONSIVE ERF1 Regulates Reactive Oxygen Species–Dependent Signaling during the Initial Response to Salt Stress in Rice
964 dep Os05g0118700 10.1186/1939-8433-5-28 A WUSCHEL-related homeobox 3B gene, depilous (dep), confers glabrousness of rice leaves and glumes
965 LC1 Os01g0785400 10.1093/mp/sss064
966 TUD1 Os03g0232600 10.1371/journal.pgen.1003391 Annotated
967 GL3.1 Os03g0646900 10.1038/cr.2012.151 Annotated
971 Oshox22 Os04g0541700 10.1007/s11103-012-9967-1 Annotated
972 OsLG1 Os04g0656500 10.1038/ng.2567 OsLG1 regulates a closed panicle trait in domesticated rice
973 OsMSH5 Os05g0498300 10.1093/mp/sss145 Annotated
974 ABCG15 Os06g0607700 10.1093/pcp/pcs162 Annotated
975 TGW6 Os06g0623700 10.1038/ng.2612 Loss of function of the IAA-glucose hydrolase gene TGW6 enhances rice grain weight and increases yield
976 OsFD2 Os06g0720900 10.1093/pcp/pct005 Functional Diversification of FD Transcription Factors in Rice, Components of Florigen Activation Complexes Annotated
127 OsFD1 Os09g0540800 10.1038/nature10272 Functional Diversification of FD Transcription Factors in Rice, Components of Florigen Activation Complexes
977 OsDGL1 Os07g0209000 10.1093/pcp/pcs159 OsDGL1, a Homolog of an Oligosaccharyltransferase Complex Subunit, is Involved in N-Glycosylation and Root Development in Rice
978 Rurm1 Os07g0466300 10.1093/mp/sst042 Loss-of-Function of a Ubiquitin-Related Modifier Promotes the Mobilization of the Active MITE mPing
979 RSS3 Os11g0446000 10.1105/tpc.113.112052 Annotated
980 OsRecQl4 Os04g0433800 10.1093/pcp/pcs155 DNA replication arrest leads to enhanced homologous recombination and cell death in meristems of rice OsRecQl4 mutants
981 OsExo1 Os01g0777300 10.1093/pcp/pcs155 Rice exonuclease-1 homologue, OsEXO1, that interacts with DNA polymerase k and RPA subunit proteins, is involved in cell proliferation
982 OsIRX10 Os01g0926700 10.1093/mp/sss135 Inactivation of OsIRX10 Leads to Decreased Xylan Content in Rice Culm Cell Walls and Improved Biomass Saccharification
983 OsCpn60α1 Os12g0277500 10.1007/s10059-013-2337-2 OsCpn60α1, Encoding the Plastid Chaperonin 60α Subunit, Is Essential for Folding of rbcL
985 Dro1 Os09g0439800 10.1038/ng.2725 Annotated
986 OsSAG12-1 Os01g0907600 10.1007/s12038-013-9334-7 Down-regulation of OsSAG12-1 results in enhanced senescence and pathogen-induced cell death in transgenic rice plants
987 BGL11(t) Os11g0592900 10.1007/s13258-013-0094-4 Identification and characterization of BGL11(t), a novel gene regulating leaf-color mutation in rice (Oryza sativa L.)
990 OsDET1 Os01g0104600 10.1016/j.plantsci.2013.06.003 Mutation of OsDET1 increases chlorophyll content in rice
991 OsVHA-A Os06g0662000 10.1371/journal.pone.0069046 Annotated
992 TIFY11b Os03g0181100 10.1271/bbb.120545 Overexpression of a Rice TIFY Gene Increases Grain Size through Enhanced Accumulation of Carbohydrates in the Stem
994 GE Os07g0603700 10.1111/tpj.12223 GIANT EMBRYO encodes CYP78A13, required for proper size balance between embryo and endosperm in rice
999 OsAP65 Os07g0592200 10.1093/jxb/ert173 OsAP65, a rice aspartic protease, is essential for male fertility and plays a role in pollen germination and pollen tube growth
1000 OsbZIP58 Os07g0182000 10.1093/jxb/ert187 OsbZIP58, a basic leucine zipper transcription factor, regulates starch biosynthesis in rice endosperm
1001 YGL138(t) Os11g0153600 10.1186/1939-8433-6-7 YGL138(t), encoding a putative signal recognition

particle 54 kDa protein, is involved in chloroplast development of rice

Development
1003 OsGA20ox3 Os07g0169700 10.1094/MPMI-05-12-0138-R Gibberellin 20-Oxidase Gene OsGA20ox3 Regulates

Plant Stature and Disease Development in Rice

Stress
1004 Hd16 Os03g0793500 10.1111/tpj.12268 Annotated
1005 Bh4 Os04g0460200 10.1104/pp.110.168500 Genetic Control of a Transition from Black to Straw-White Seed Hull in Rice Domestication Development
1006 OsSUV3 Os03g0746500 10.1111/tpj.12277 Annotated
1007 OsMPS Os02g0618400 10.1111/tpj.12286 Annotated
1008 OsCDT3 Os01g0178300 10.1111/tpj.12296 A plasma membrane-localized small peptide is involved in rice aluminum tolerance Stress
1009 CRC1 Os04g0479000 10.1105/tpc.113.113175 CENTRAL REGION COMPONENT1, a Novel Synaptonemal Complex Component, Is Essential for Meiotic Recombination Initiation in Rice Development
1010 ASL1 Os01g0678600 10.1534/g3.113.007856 Disruption of the Rice Plastid Ribosomal Protein S20 Leads to Chloroplast Developmental Defects and Seedling Lethality Development
1011 OsNAP Os03g0327800 10.1186/1471-2229-13-132 Annotated
1012 GS6 Os06g0127800 10.1111/jipb.12062 Annotated
1013 OsHOS1 Os03g0737200 10.1007/s11103-013-0092-6 Isolation and characterization of rice (Oryza sativa L.) E3-ubiquitin ligase OsHOS1 gene in the modulation of cold stress response Stress
1014 SGRL Os04g0692600 10.1016/j.jplph.2013.05.016 The Stay-Green Rice like (SGRL) gene regulates chlorophyll degradation in rice
1017 An-1 Os04g0350700 10.1105/tpc.113.113589 Annotated
1018 OslecRK Os04g0201900 10.1111/tpj.12328 A rice lectin receptor-like kinase that is involved in innateimmune responses also contributes to seed germination
1020 OsVOZ2 Os05g0515700 10.1371/journal.pone.0073346 Xanthomonas oryzae pv. oryzae Type III Effector XopN Targets OsVOZ2 and a Putative Thiamine Synthase as a Virulence Factor in Rice Stress
1021 OsHsfB2b Os08g0546800 10.1007/s00299-013-1492-4 Annotated
1022 OsGRX8 Os02g0512400 10.1007/s00425-013-1940-y Modified expression of an auxin‐responsive rice CC‐type glutaredoxin gene affects multiple abiotic stress responses stress
1023 DAO Os04g0475600 10.1016/j.devcel.2013.09.005 Annotated
1024 OsHMA5 Os04g0556000 10.1104/pp.113.226225 A Member of the Heavy Metal P-Type ATPase OsHMA5 Is Involved in Xylem Loading of Copper in Rice Stress
1025 Osoxo4 Os03g0693700 10.1111/mpp.12055 Rice oxalate oxidase gene driven by green tissue-specific promoter increases tolerance to sheath blight pathogen (Rhizoctonia solani) in transgenic rice
1026 OsSTN8 Os05g0480000 10.1111/tpj.12331 Loss-of-function of OsSTN8 suppresses the photosystem II core protein phosphorylation and interferes with the photosystem II repair mechanism in rice
1027 OsEXPA8 Os01g0248900 10.1371/journal.pone.0075997 Overexpression of OsEXPA8, a root-specific gene, improves rice growth and root system architecture by facilitating cell extension
1028 OsPRR37 Os07g0695100 10.1093/mp/sst088 Natural Variation in OsPRR37 Regulates Heading Date and Contributes to Rice Cultivation at a Wide Range of Latitudes
1029 OsMADS57 Os02g0731200 10.1038/ncomms2542 Annotated
1030 DWA1 Os04g0473900 10.1073/pnas.1316412110 Annotated
1031 gpa2 Os03g0262900 10.1093/mp/sst081 Annotated
1032 MHZ7/OsEIN2 Os07g0155600 10.1093/mp/sst087 Annotated
1033 YGL2 Os06g0603000 10.1007/s00299-013-1498-y Annotated
1034 OsMTP8.1 Os03g0226400 10.1093/jxb/ert243 Mn tolerance in rice is mediated by MTP8.1, a member of the cation diffusion facilitator family
1035 this1 Os01g0751600 10.1093/jxb/ert256 THIS1 is a putative lipase that regulates tillering, plant height, and spikelet fertility in rice
1036 OsABCG15 Os06g0607700 10.1111/jipb.12053 The ATP‐binding Cassette Transporter OsABCG15 is Required for Anther Development and Pollen Fertility in Rice
1037 OsRRMh Os09g0516300 10.1111/jipb.12056 OsRRMh, a Spen-like gene, plays an important role during the vegetative to reproductive transition in rice.
1038 OsCTR2 Os02g0527600 10.1093/jxb/ert272 Rice CONSTITUTIVE TRIPLE-RESPONSE2 is involved in the ethylene-receptor signalling and regulation of various aspects of rice growth and development
1039 OsbZIP71 Os09g0306400 10.1007/s11103-013-0115-3 Annotated
1040 OsHox33 Os12g0612700 10.1007/s11427-013-4565-2 Knockdown of OsHox33, a member of the class III homeodomain-leucine zipper gene family, accelerates leaf senescence in rice
1041 OsGAPDHB Os03g0129300 10.1016/j.plantsci.2013.09.010 A proteomic study of rice cultivar TNG67 and its high aroma mutant SA0420.
1042 OsAPX7 Os04g0434800 10.1016/j.plantsci.2013.10.001 The knockdown of chloroplastic ascorbate peroxidases reveals its regulatory role in the photosynthesis and protection under photo-oxidative stress in rice
1043 OsAPX8 Os02g0553200 10.1016/j.plantsci.2013.10.001 Annotated
1044 OsRNS4 Os09g0537700 10.1016/j.plantsci.2013.10.003 Annotated
1045 D53 Os11g0104300 "10.1038/nature12870, 10.1038/nature12878" Annotated
1046 OsHRZ1 Os01g0689451 10.1038/ncomms3792 Iron-binding haemerythrin RING ubiquitin ligases regulate plant iron responses and accumulation
1047 OsHRZ2 Os05g0551000 10.1038/ncomms3792 Iron-binding haemerythrin RING ubiquitin ligases regulate plant iron responses and accumulation
1048 PTB1 Os05g0145000 10.1038/ncomms3793 Natural variation in PTB1 regulates rice seed setting rate by controlling pollen tube growth
1050 OsBOR4 Os05g0176800 10.1093/pcp/pct136 Annotated
1051 LYL1 Os02g0744900 10.1371/journal.pone.0075299 Mutation of the Light-Induced Yellow Leaf 1 Gene, Which Encodes a Geranylgeranyl Reductase, Affects Chlorophyll Biosynthesis and Light Sensitivity in Rice
1052 OsEBS Os05g0591400 10.1111/pbi.12097 Identification and characterization of OsEBS, a gene involved in enhanced plant biomass and spikelet number in rice
1053 SOR1 Os04g0101800 10.1186/1939-8433-6-30 Isolation of a novel mutant gene for soil-surface rooting in rice (Oryza sativa L.)
1054 OsCPK10 Os03g0788500 10.1016/j.plaphy.2013.10.004 Annotated
1055 JMJ705 Os01g0907400 10.1105/tpc.113.118802 Jumonji C Domain Protein JMJ705-Mediated Removal of Histone H3 Lysine 27 Trimethylation Is Involved in Defense-Related Gene Activation in Rice Stress
1056 OsCCaMK Os05g0489900 10.1128/AEM.03646-13. A rice gene for microbial symbiosis, OsCCaMK, reduces CH 4 flux in a paddy field with low nitrogen input Stress
1061 LH8 Os08g0174500 10.1038/srep04263 Annotated
1063 OsTrx1 Os09g0134500 10.1104/pp.113.228049 Trithorax group protein Oryza sativa Trithorax1 controls flowering time in rice via interaction with early heading date3
1071 RIXI Os11g0701800 10.1007/s10658-013-0342-0 Functional characterization of a new pathogen induced xylanase inhibitor (RIXI) from rice
1072 TCD9 Os09g0563300 10.1016/j.plantsci.2013.11.003 Importance of the rice TCD9 encoding α subunit of chaperonin protein 60 (Cpn60α) for the chloroplast development during the early leaf stage.
1074 OsBURP16 Os10g0409400 10.1111/pce.12223 Overexpression of stress-inducible OsBURP16, the β subunit of polygalacturonase 1, decreases pectin content and cell adhesion and increases abiotic stress sensitivity in rice
1075 OsDSR2 Os01g0839200 10.1007/s00299-013-1532-0 Overexpression of a new stress-repressive gene OsDSR2 encodinga protein with a DUF966 domain increases salt and simulated drought stress sensitivities and reduces ABA sensitivity in rice
1076 ssg4 Os01g0179400 10.1104/pp.113.229591 Amyloplast-Localized SUBSTANDARD STARCH GRAIN4 Protein Influences the Size of Starch Grains in Rice Endosperm
1080 OsAMT1;1 Os04g0509600 10.1093/jxb/ert458 AMT1;1 transgenic rice plants with enhanced NH4+ permeability show superior growth and higher yield under optimal and suboptimal NH4+ conditions
1082 WLP1 Os01g0749200 10.1007/s11103-013-0134-0 The rice nuclear gene WLP1 encoding a chloroplast ribosome L13 protein is needed for chloroplast development in rice grown under low temperature conditions
1083 ADH1 Os11g0210300 10.1093/aob/mct305 Annotated
1084 OsAlba1 Os01g0173100 10.1016/j.phytochem.2014.01.015 Annotated
1086 OsDCL3a Os01g0909200 10.1073/pnas.1318131111 Annotated
1087 SGL Os05g0154700 10.1007/s00299-013-1524-0 Annotated
1088 OsHI-XIP Os05g0247100 10.1007/s11105-013-0661-5 Overexpression of a Xylanase Inhibitor Gene, OsHI-XIP, Enhances Resistance in Rice to Herbivore
1089 OsZHD1 Os09g0466400 10.1007/s00425-013-2009-7 Annotated
1090 CYP96B4 Os03g0140400 10.1371/journal.pone.0088068 The rice semi-dwarf mutant sd37, caused by a mutation in CYP96B4, plays an important role in the fine-tuning of plant growth.
1092 FLO6 Os03g0686900 10.1111/tpj.12444 FLOURY ENDOSPERM6 encodes a CBM48 domain-containing protein involved in compound granule formation and starch synthesis in rice endosperm
1093 OsKS2 Os04g0612000 10.1111/plb.12069 Annotated
1094 OsDG2 Os02g0606000 10.1007/s00299-013-1549-4 The rice OsDG2 encoding a glycine-rich protein is involved in the regulation of chloroplast development during early seedling stage
1095 Hwi2 Os01g0795400 10.1038/ncomms4357 A two-locus interaction causes interspecific hybrid weakness in rice
1222 Hwi1 Os11g0173500 10.1038/ncomms4357 A two-locus interaction causes interspecific hybrid weakness in rice
1096 OsGLO4 Os07g0152900 10.1111/ppl.12104 Suppression of glycolate oxidase causes glyoxylate accumulation that inhibits photosynthesis through deactivating Rubisco in rice
1097 DL Os03g0215200 10.1111/tpj/12411 Annotated
1098 OsETT2 Os01g0670800 10.1111/tpj/12411 The DROOPING LEAF and OsETTIN2 genes promote awndevelopment in rice
1099 SHL2 Os01g0527600 10.1111/tpj/12411 Rice RNA-dependent RNA polymerase 6 acts in small RNA biogenesis and spikelet development.
1100 OsLIS Os02g0121700 10.1111/pce.12169 Jasmonate induction of the monoterpene linalool confers resistance to rice bacterial blight and its biosynthesis is regulated by JAZ protein in rice
1101 OsPT9 Os06g0324800 10.1111/pce.12224 Phosphate transporters OsPHT1;9 and OsPHT1;10 are involved in phosphate uptake in rice.
1102 OsPT10 Os06g0325200 10.1111/pce.12224 Phosphate transporters OsPHT1;9 and OsPHT1;10 are involved in phosphate uptake in rice.
1106 LTG1 Os02g0622100 10.1111/tpj.12487 Annotated
1107 OsRPK1 Os05g0486100 10.1016/j.bbagen.2014.01.003 Annotated
1108 d89 Os05g0333200 10.1007/s10681-014-1071-y Annotated
1112 OsEMF2b Os09g0306800 10.1007/s11105-014-0733-1 OsEMF2b Acts as a Regulator of Flowering Transition and Floral Organ Identity by Mediating H3K27me3 Deposition at OsLFL1 and OsMADS4 in Rice
1117 OsFIE1 Os08g0137250 10.1104/pp.113.232413 Annotated
1118 OsUGE1 Os05g0595100 10.1371/journal.pone.0096158 Functional Characterization of the Rice UDP-glucose 4- epimerase 1, OsUGE1: A Potential Role in Cell Wall Carbohydrate Partitioning during Limiting Nitrogen Conditions
1119 OsATG7 Os01g0614900 10.4161/auto.28279 OsATG7 is required for autophagy-dependent lipid metabolism in rice postmeiotic anther development
1120 chalk5 Os05g0156900 10.1038/ng.2923 Chalk5 encodes a vacuolar H + -translocating pyrophosphatase influencing grain chalkiness in rice
1122 cl7(t) Os07g0616000 10.1093/jxb/eru074 Rice DENSE AND ERECT PANICLE 2 is essential for determining panicle outgrowth and elongation
1123 OsGPX1 Os04g0556300 10.1007/s10535-014-0394-9 Chloroplastic and mitochondrial GPX genes play a critical role in rice development
1124 OsGPX4 Os06g0185900 10.1007/s10535-014-0394-9 Chloroplastic and mitochondrial GPX genes play a critical role in rice development
1125 D1352 Os03g0232600 10.1007/s11032-014-0021-7 Annotated
1126 OsAHP1 Os08g0557700 10.1104/pp.113.232629 Two Rice Authentic Histidine Phosphotransfer Proteins, OsAHP1 and OsAHP2, Mediate Cytokinin Signaling and Stress Responses in Rice
1127 OsAHP2 Os09g0567400 10.1104/pp.113.232629 Two Rice Authentic Histidine Phosphotransfer Proteins, OsAHP1 and OsAHP2, Mediate Cytokinin Signaling and Stress Responses in Rice
1128 OsWR2 Os06g0604000 10.1007/s11105-013-0687-8 Annotated
1129 Se14 Os03g0151300 10.1371/journal.pone.0096064 Se14, Encoding a JmjC Domain-Containing Protein, Plays Key Roles in Long-Day Suppression of Rice Flowering through the Demethylation of H3K4me3 of RFT1
1130 MET1b Os07g0182900 10.1007/s11103-014-0178-9 Annotated
1131 MET1a Os03g0798300 10.1007/s11103-014-0178-9 Homologous recombination-mediated knock-in targeting of the MET1a gene for a maintenance DNA methyltransferase reproducibly reveals dosage-dependent spatiotemporal gene expression in rice
1133 smos1 Os05g0389000 10.1093/pcp/pcu023 A Novel AP2-Type Transcription Factor, SMALL ORGAN SIZE1, Controls Organ Size Downstream of an Auxin Signaling Pathway
1135 OsCPK4 Os02g0126400 10.1104/pp.113.230268 Annotated
1136 OsPAD4 Os11g0195500 10.1111/tpj.12500 Rice OsPAD4 functions differently from Arabidopsis AtPAD4 in host-pathogen interactions
1137 OsMOGS Os01g0921200 10.1111/tpj.12497 Annotated
1138 OsJAR1 Os05g0586200 10.1111/pce.12201 Annotated
1139 OsMADS34 Os03g0756100 10.1111/nph.12657 Annotated
1140 OsMRP5 Os03g0142800 10.1007/s11248-014-9792-1 Seed-specific silencing of OsMRP5 reduces seed phytic acid and weight in rice
1141 TMS 9-1(OsMS1) Os09g0449000 10.1007/s00122-014-2289-8 Annotated
1142 epsps Os06g0133900 10.1111/nph.12428 A novel 5-enolpyruvoylshikimate-3-phosphate (EPSP) synthase transgene for glyphosate resistance stimulates growth and fecundity in weedy rice (Oryza sativa) without herbicide
1143 DWT1 Os01g0667400 10.1371/journal.pgen.1004154 Annotated
1144 DP2 Os02g0531600 10.1007/s13258-013-0169-2 Morphological characteristics and gene mapping of a dense panicle (dp2) mutant in rice (Oryza sativa L.)
1145 OsRACK1A Os01g0686800 10.1371/journal.pone.0097120 OsRACK1 Is Involved in Abscisic Acid- and H 2 O 2 - Mediated Signaling to Regulate Seed Germination in Rice (Oryza sativa, L.)
1223 OsCAF1A Os08g0440300 10.1007/s11103-014-0196-7 Divergence of the expression and subcellular localization of CCR4‐associated factor 1 (CAF1) deadenylase proteins in Oryza sativa
1146 OsCAF1B Os04g0684900 10.1007/s11103-014-0196-7 Divergence of the expression and subcellular localization of CCR4‐associated factor 1 (CAF1) deadenylase proteins in Oryza sativa
1147 OsCAF1G Os09g0416800 10.1007/s11103-014-0196-7 Divergence of the expression and subcellular localization of CCR4‐associated factor 1 (CAF1) deadenylase proteins in Oryza sativa
1148 OsCAF1H Os02g0796300 10.1007/s11103-014-0196-7 Divergence of the expression and subcellular localization of CCR4‐associated factor 1 (CAF1) deadenylase proteins in Oryza sativa
1149 OsLOX2 (L-2) Os03g0738600 10.1007/s11248-014-9803-2 OsLOX2, a rice type I lipoxygenase, confers opposite effects on seed germination and longevity
1150 OsNAC111 Os10g0177000 10.1094/mpmi-03-14-0065-r OsNAC111, a Blast Disease–Responsive Transcription Factor in Rice, Positively Regulates the Expression of Defense-Related Genes
1152 OsCKX4 Os01g0940000 10.1104/pp.114.238584 Annotated
1155 DIF1 Os01g0626400 10.1371/journal.pone.0102529 Annotated
1164 CYP93G1 Os04g0101400 10.1104/pp.114.239723 Cytochrome P450 93G1 Is a Flavone Synthase II That Channels Flavanones to the Biosynthesis of Tricin O-Linked Conjugates in Rice
1224 CYP93G2 Os06g0102100 10.1104/pp.114.239723 CYP93G2 Is a Flavanone 2-Hydroxylase Required for C-Glycosylflavone Biosynthesis in Rice
1165 OsMYB4P Os11g0558200 10.1016/j.plaphy.2014.02.024 Overexpression of OsMYB4P, an R2R3-type MYB transcriptional activator, increases phosphate acquisition in rice
1166 rip-3 (a-tubulin) Os03g0726100 10.1016/j.plaphy.2014.04.011 Water-stress-induced inhibition of a -tubulin gene expression during growth, and its implications for reproductive success in rice
1167 OsRDR1 Os02g0736200 10.1186/1471-2229-14-177 Mutation of the RDR1 gene caused genome-wide changes in gene expression, regional variation in small RNA clusters and localized alteration in DNA methylation in rice
1168 ygl7 Os03g0811100 10.1371/journal.pone.0099564 Annotated
1169 OsDREB6 Os09g0369000 10.1007/s12374-013-0480-0 Characterization of OsDREB6 Responsive to Osmotic and Cold Stresses in Rice
1170 OsPAO7 Os09g0368500 10.1093/pcp/pcu047 Polyamine Oxidase 7 is a Terminal Catabolism-Type Enzyme in Oryza sativa and is Specifically Expressed in Anthers
1172 OsAGPL2 Os01g0633100 10.1093/pcp/pcu057 The Rice Endosperm ADP-Glucose Pyrophosphorylase Large Subunit is Essential for Optimal Catalysis and Allosteric Regulation of the Heterotetrameric Enzyme
1173 OsMYB103L Os08g0151300 10.1186/1471-2229-14-158 OsMYB103L, an R2R3-MYB transcription factor, influences leaf rolling and mechanical strength in rice
1174 DRO1 Os09g0439800 10.1038/srep05563 Annotated
1175 FIB Os01g0169800 10.1111/tpj.12517 Annotated
1176 OsNIP3;1 Os10g0513200 10.1111/tpj.12511 OsNIP3;1, a rice boric acid channel, regulates boron distribution and is essential for growth under boron-deficient conditions
1177 OsETOL1 Os03g0294700 10.1111/tpj.12508 Annotated
1178 OsGLY1-11.2 Os08g0191700 10.1111/tpj.12521 A unique Ni 2+ -dependent and methylglyoxal-inducible rice glyoxalase I possesses a single active site and functions in abiotic stress response
1179 OsKTN80a Os10g0494800 10.1111/jipb.12170 Overexpression of OsKTN80a, a katanin P80 ortholog, caused the repressed cell elongation and stalled cell division mediated by microtubule apparatus defects in primary root in Oryza Sativa
1180 WRKY45 Os05g0322900 10.1007/s11103-014-0221-x Annotated
1181 OsRZFP34 Os01g0719100 10.1007/s11103-014-0217-6 Expression of a gene encoding a rice RING zinc‐finger protein, OsRZFP34, enhances stomata opening Stress
1182 OsSPS1 Os01g0919400 10.1016/j.plantsci.2014.05.018 Annotated
1183 AM1 Os04g0682800 10.1007/s00299-014-1639-y Annotated
1184 OsMPK3 Os02g0148100 10.1007/s00299-014-1620-9 Annotated
1186 OsMet1-2 Os07g0182900 10.1073/pnas.1410761111 Annotated
1189 sped1 Os06g0597500 10.1534/genetics.114.163931 Regulation of Inflorescence Branch Development in Rice Through a Novel Pathway Involving the Pentatricopeptide Repeat Protein sped1-D
1190 OsXXT1 Os03g0300000 10.1093/jxb/eru189 Mutation in xyloglucan 6-xylosytransferase results in abnormal root hair development in Oryza sativa
1191 Nrat1 Os02g0131800 10.1093/jxb/eru201 Annotated
1192 SLCHL4 (NAL1) Os04g0615000 10.1093/mp/ssu055 Annotated
1193 OsNMD3 Os10g0573900 10.1093/jxb/eru150 Annotated
1194 OsRAN1 Os01g0611100 10.1093/jxb/eru178 Annotated
1195 OsABCB14 Os04g0459000 10.1111/tpj.12544 OsABCB14 functions in auxin transport and iron homeostasis in rice (Oryza sativa.L)
1196 OsRAD51D Os09g0104200 10.1111/tpj.12558 Annotated
1198 Roc5(rl(t)) Os02g0674800 10.1007/s11434-014-0357-8 Isolation and characterization of rl (t) , a gene that controls leaf rolling in rice
1200 OsB12D1 Os07g0604700 10.3390/ijms150813461 The Mitochondrion-Located Protein OsB12D1 Enhances Flooding Tolerance during Seed Germination and Early Seedling Growth in Rice Stress
1201 OsHO2 Os03g0395000 10.1007/s00425-014-2116-0 Annotated Biosynthesis
1202 CL4 (= dwarf11) Os04g0469800 10.1007/s11434-014-0568-z Annotated Development
1203 OsEXPA3 Os05g0276500 10.2135/cropsci2013.11.0746 Repression of OsEXPA3 Expression Leadsto Root System Growth Suppression in Rice Stress,Development
1204 bHLH142 Os01g0293100 10.1105/tpc.114.126292 Annotated Development
1205 SIT1 Os02g0640500 10.1105/tpc.114.125187 The Receptor-Like Kinase SIT1 Mediates Salt

Sensitivity by Activating MAPK3/6 and Regulating Ethylene Homeostasis in Rice

Stress
1206 SIT2 Os04g0531400 10.1105/tpc.114.125187 The Receptor-Like Kinase SIT1 Mediates Salt

Sensitivity by Activating MAPK3/6 and Regulating Ethylene Homeostasis in Rice

Stress
1207 CPK18 Os07g0409900 10.1105/tpc.114.126441 Direct Phosphorylation and Activation of a Mitogen-Activated

Protein Kinase by a Calcium-Dependent Protein Kinase in Rice

Stress
1208 OsHPR1 Os02g0101500 10.1111/jipb.12125 Two hydroxypyruvate reductases encoded by OsHPR1 and OsHPR2 are involved in

photorespiratory metabolism in rice

Metabolism
1222 OsHPR2 Os01g0228600 10.1111/jipb.12125 Two hydroxypyruvate reductases encoded by OsHPR1 and OsHPR2 are involved in

photorespiratory metabolism in rice

Metabolism
1209 OsCAD2 Os02g0187800 10.1038/srep06567 Annotated
1210 OsSLI1 Os02g0649300 10.1155/2014/809353 OsSLI1, a Homeodomain Containing Transcription Activator, Involves Abscisic Acid Related Stress Response in Rice (Oryza sativa L.) Stress,Development
1211 OsMKK1 (MAPKK) Os06g0147800 10.1016/j.plantsci.2014.08.007 The mitogen-activated protein kinase cascade MKK1-MPK4 mediates salt signaling in rice Stress
1212 SPK1(SYG1) Os06g0603600 10.1073/pnas.1404680111 Annotated Finished
1213 SPK2(SYG2) Os02g0202200 10.1073/pnas.1404680111 Rice SPX1 and SPX2 inhibit phosphate starvation responses through interacting with PHR2 in a phosphate-dependent manner
1215 OsAAP6 Os01g0878700 10.1038/ncomms5847 OsAAP6 functions as an important regulator of grain protein content and nutritional quality in rice
1216 OsSOT1(STV11) Os11g0505300 10.1038/ncomms5768 STV11 encodes a sulphotransferase and confers durable resistance to rice stripe virus
1217 tms5 Os02g0214300 10.1038/srep06567 Annotated
1218 CYP703A3 Os08g0131100 10.1111/jipb.12212 Rice CYP703A3, a cytochrome P450 hydroxylase, is essential for development of anther cuticle and pollen exine Development
1219 OsGUN4 Os11g0267000 10.1007/s00122-014-2393-9 A down-regulated epi-allele of the genomes uncoupled 4 gene generates a xantha marker trait in rice. Color
1220 OsBADH1 Os04g0464200 OsBADH1 is possibly involved in acetaldehyde oxidation in rice plant peroxisomes OsBADH1 is possibly involved in acetaldehyde oxidation in rice plant peroxisomes Stress
243 gh2 Os02g0187800 10.1104/pp.105.073007 Increased lodging resistance in long-culm, low-lignin gh2 rice for improved feed and bioenergy production Stress
1221 OsABCC1 Os04g0620000 10.1073/pnas.1414968111 A rice ABC transporter, OsABCC1, reduces arsenic accumulation in the grain Stress
demo demo Os04g0459000 demo demo demo
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