Test

Number	Gene name	RAP ID	DOI	Reference TitleLDMAR	Keywords
1	GA2ox3	Os01g0757200	10.1105/tpc.108.060913	A Novel Class of Gibberellin 2-Oxidases Control Semidwarfism, Tillering, and Root Development in Rice W
2	GA2ox9	Os02g0630300	10.1105/tpc.108.060913	A Novel Class of Gibberellin 2-Oxidases Control Semidwarfism, Tillering, and Root Development in Rice W
3	GA2ox6	Os04g0522500	10.1105/tpc.108.060913	A Novel Class of Gibberellin 2-Oxidases Control Semidwarfism, Tillering, and Root Development in Rice W
4	SG1	Os09g0459200	10.1104/pp.111.187567	Annotated
5	ALS	Os02g0510200	10.1007/s00299-010-0915-8	Selecting genetic transformants of indica and indica-derived rice cultivars using bispyribac sodium and a mutated ALS gene
6	EL5	Os02g0559800	10.1111/j.1365-313X.2007.03120.x	SHORT GRAIN1 Decreases Organ Elongation and Brassinosteroid Response in Rice1[W][OA]
7	OASA2	Os03g0264400	10.1104/pp.111.175778	Application of Gene Targeting to Designed Mutation Breeding of High-Tryptophan Rice1[W][OA]
8	OsGAD2	Os04g0447800	10.1093/jxb/erm120	C-terminal extension of rice glutamate decarboxylase(OsGAD2) functions as an autoinhibitory domain and overexpression of a truncated mutant results in the accumulation of extremely high levels of GABA in plant cells
9	OsIAA3	Os12g0601400	10.1111/j.1365-313X.2006.02693.x	Production and characterization of auxin-insensitive rice by overexpression of a mutagenized rice IAA protein
10	IDEF1	Os08g0101000	10.1111/j.1365-313X.2011.04772.x	Annotated
11	OsPLDα1	Os01g0172400	10.1111/j.1744-7909.2010.01021.x	Annotated
12	AFT	Os01g0185300	10.1007/s00425-009-1077-1	Down-regulation of four putative arabinoxylan feruloyl transferase genes from family PF02458 reduces ester-linked ferulate content in rice cell walls
13	OsGAE1	Os01g0201600	10.1007/s11103-006-9030-1	The rice OsGAE1 is a novel gibberellin-regulated gene and involved in rice growth
14	OsMADS3	Os01g0201700	10.1023/A:1006051911291	Annotated
15	OsSAMS3	Os01g0293000	10.1016/j.jplph.2011.05.020	Knockdown of SAMS genes encoding S-adenosyl-l-methionine synthetases causes methylation alterations of DNAs and histones and leads to late flowering in rice
16	OsSAMS2	Os01g0323600	10.1016/j.jplph.2011.05.020	Knockdown of SAMS genes encoding S-adenosyl-l-methionine synthetases causes methylation alterations of DNAs and histones and leads to late flowering in rice
17	OsACO7	Os01g0580500	10.1104/pp.110.162412	Cyanide, a Coproduct of Plant Hormone Ethylene Biosynthesis, Contributes to the Resistance of Rice to Blast Fungus
18	OsrbohA	Os01g0734466	10.5511/plantbiotechnology.22.127	Function of the rice gp91phox homologs OsrbohA and OsrbohE genes in ROS-dependent plant immune responses
19	Orysa;CycB1;1	Os01g0805600	10.1007/s00425-009-1051-y	Annotated
20	OsNAC4	Os01g0816100	10.1038/emboj.2009.39	The transcription factor OsNAC4 is a key positive regulator of plant hypersensitive cell death
21	OsHAP3A	Os01g0834400	10.1046/j.1365-313X.2003.01897.x	Annotated
22	HDT702	Os01g0909100	10.1016/j.bbrc.2009.07.162	Rice histone deacetylase genes display specific expression patterns and developmental functions
23	OsDCL1	Os01g0909200	10.1104/pp.105.063420	Loss of Function of OsDCL1 Affects MicroRNA Accumulation and Causes Developmental Defects in Rice
24	SDG714	Os01g0927000	10.1105/tpc.106.048124	SDG714, a Histone H3K9 Methyltransferase, Is Involved in Tos17 DNA Methylation and Transposition in Rice
25	rtS	Os01g0929600	10.1007/s11103-006-9031-0	Annotated
26	Osg1	Os01g0947700	10.1007/s00425-010-1301-z	A rice �-1,3-glucanase gene Osg1 is required for callose degradation in pollen development
27	NOA1	Os02g0104700	10.1371/journal.pone.0020015	Annotated
28	OsNOA1?RIF1	Os02g0104700	10.1111/j.1469-8137.2010.03264.x	Annotated
29	Os4CL3	Os02g0177600	10.1104/pp.111.178301	Functional Characterization of Evolutionarily Divergent 4-Coumarate:Coenzyme A Ligases in Rice
30	HDA703	Os02g0214900	10.1016/j.bbrc.2009.07.162	Rice histone deacetylase genes display specific expression patterns and developmental functions
31	HDA710	Os02g0215200	10.1016/j.bbrc.2009.07.162	Rice histone deacetylase genes display specific expression patterns and developmental functions
32	RPBF	Os02g0252400	10.1111/j.1365-313X.2009.03925.x	Compensation and interaction between RISBZ1 and RPBF during grain filling in rice
33	DCW11	Os02g0255100	10.1093/pcp/pcn036	DCW11, Down-Regulated Gene 11 in CW-Type Cytoplasmic Male Sterile Rice,Encoding Mitochondrial Protein Phosphatase 2C is Related to Cytoplasmic Male Sterility
34	OsHARP	Os02g0256200	10.1007/s00726-008-0043-8	Characterization of a histidine- and alanine-rich protein showing interaction with calreticulin in rice
35	OsGMST1	Os02g0274900	10.1093/jxb/err178	Annotated
36	OsTudor-SN	Os02g0523500	10.1111/j.1365-313X.2008.03516.x	The cytoplasmic-localized, cytoskeletal-associated RNA binding protein OsTudor-SN: evidence for an essential role in storage protein RNA transport and localization
37	RAR1	Os02g0535400	10.1105/tpc.107.055517	Annotated
38	GF14e	Os02g0580300	10.1111/j.1365-313X.2011.04728.x	Annotated
39	OsNAR2.1	Os02g0595900	10.1111/j.1365-3040.2011.02335.x	Rice OsNAR2.1 interacts with OsNRT2.1, OsNRT2.2 and OsNRT2.3a nitrate transporters to provide uptake over high and low concentration ranges
40	OsCKI1	Os02g0622100	10.1046/j.1365-313X.2003.01866.x	Annotated
41	Oscry2	Os02g0625000	10.1093/pcp/pcj064	Involvement of Rice Cryptochromes in De-etiolation Responses and Flowering
42	OsYSL15	Os02g0650300	10.1074/jbc.M806042200	Annotated
43	SGL1	Os02g0762600	10.1104/pp.111.187567	SHORT GRAIN1 Decreases Organ Elongation and Brassinosteroid Response in Rice
44	CEBiP	Os03g0133400	10.1111/j.1365-313X.2010.04328.x	Perception of the chitin oligosaccharides contributes to disease resistance to blast fungus Magnaporthe oryzae in rice
45	OsPAO	Os03g0146400	10.1016/j.jplph.2011.05.026	Knockdown of OsPAO and OsRCCR1 cause different plant death phenotypes in rice
46	OsPT2	Os03g0150800	10.1111/j.1365-313X.2008.03726.x	Two rice phosphate transporters, OsPht1;2 and OsPht1;6, have different functions and kinetic properties in uptake and translocation
47	OsSUT1	Os03g0170900	10.1093/pcp/pce148	Annotated
48	OsBP-73	Os03g0183100	10.1023/A:1024854101965	OsBP-73, a rice gene, encodes a novel DNA-binding protein with a SAP-like domain and its genetic interference by double-stranded RNA inhibits rice growth
49	OsMDP1	Os03g0186600	10.1111/j.1365-313X.2006.02804.x	A brassinolide-suppressed rice MADS-box transcription factor, OsMDP1, has a negative regulatory role in BR signaling
50	RINO1	Os03g0192700	10.1093/pcp/pcp071	Differential Effects of a Transgene to Confer Low Phytic Acid in Caryopses Located at Different Positions in Rice Panicles
51	OsMADS1	Os03g0215400	10.1111/j.1365-313X.2009.04101.x	Annotated
53	OsApx1	Os03g0285700	10.1016/j.phytochem.2010.01.003	Annotated
54	APx1	Os03g0285700	10.1111/j.1365-3040.2011.02366.x	Annotated
55	OsFAD7	Os03g0290300	10.1093/pcp/pcm107	Disease Resistance against Magnaporthe grisea is Enhanced in Transgenic Rice with Suppression of u-3 Fatty Acid Desaturases
57	RGB1	Os03g0669100	10.1111/j.1365-313X.2011.04643.x	Suppression of the rice heterotrimeric G protein b-subunit gene, RGB1, causes dwarfism and browning of internodes and lamina joint regions
58	OsPIPK1	Os03g0701800	10.1023/B:PLAN.0000028796.14336.24	OsPIPK1, a rice phosphatidylinositol monophosphate kinase, regulates rice heading by modifying the expression of floral induction genes
59	ero1	Os03g0733800	10.1073/pnas.0904429106	ER membrane-localized oxidoreductase Ero1 is required for disulfide bond formation in the rice endosperm
60	OsSPO11-1	Os03g0752200	10.1007/s00412-010-0284-7	OsSPO11-1 is essential for both homologous chromosome pairing and crossover formation in rice
61	CysR10	Os03g0766000	10.1093/pcp/pcr053	A Role for the Cysteine-Rich 10 kDa Prolamin in Protein Body I Formation in Rice
62	OsGLO1	Os03g0786100	10.1093/jxb/erp056	Inducible antisense suppression of glycolate oxidase reveals its strong regulation over photosynthesis in rice
63	OsMet1	Os03g0798300	10.1111/j.1365-313X.2008.03624.x	Annotation
64	CYP99A3	Os04g0178400	10.1111/j.1365-313X.2010.04408.x	Annotation
65	CYP99A2	Os04g0180400	10.1111/j.1365-313X.2010.04408.x	CYP99A3: functional identification of a diterpene oxidase from the momilactone biosynthetic gene cluster in rice
66	Ostil1	Os04g0460600	10.1111/j.1469-8137.2007.02177.x	Overexpression of a NAC-domain protein promotes shoot Blackwell Publishing Ltd branching in rice
67	OsPBP1	Os04g0531100	10.1093/mp/ssn035	A Novel C2-Domain Phospholipid-Binding Protein, OsPBP1, Is Required for Pollen Fertility in Rice
68	YAB3	Os04g0536300	10.1104/pp.107.095737	Annotation
69	OsACS2	Os04g0578000	10.1104/pp.110.162412	Cyanide, a Coproduct of Plant Hormone Ethylene Biosynthesis, Contributes to the Resistance of Rice to Blast Fungus
70	rca	Os04g0658300	10.1093/aob/mcl025	Annotation
71	OsRMC	Os04g0659300	10.1111/j.1365-3040.2007.01663.x	Annotation
72	OsMT2b	Os05g0111300	10.1104/pp.107.110304	Annotation
73	XB3	Os05g0112000	10.1105/tpc.106.046730	Annotation
74	STAR2	Os05g0119000	10.1105/tpc.108.064543	Annotation
75	OsSAMS1	Os05g0135700	10.1016/j.jplph.2011.05.020	Annotation
76	OsACO5	Os05g0149400	10.1104/pp.110.162412	Cyanide, a Coproduct of Plant Hormone Ethylene Biosynthesis, Contributes to the Resistance of Rice to Blast Fungus
77	OsBLE3	Os05g0245300	10.1016/j.phytochem.2006.05.026	OsBLE3, a brassinolide-enhanced gene, is involved in the growth of rice
78	OsMADS4	Os05g0423400	10.1023/A:1006051911291	Identification of class B and class C floral organ identity genes from rice plants
79	IDEF2	Os05g0426200	10.1074/jbc.M708732200	A Novel NAC Transcription Factor, IDEF2, That Recognizes the Iron Deficiency-responsive Element 2 Regulates the Genes Involved in Iron Homeostasis in Plants
81	OsHAP3C	Os05g0573500	10.1046/j.1365-313X.2003.01897.x	Annotated
82	OsRAD21-4	Os05g0580500	10.1007/s11103-005-4922-z	Annotated
83	OsMAPK6	Os06g0154500	10.1104/pp.104.057414	A Sphingolipid Elicitor-Inducible Mitogen-Activated Protein Kinase Is Regulated by the Small GTPase OsRac1 and Heterotrimeric G-Protein in Rice
84	RFT1	Os06g0157500	10.1242/dev.040170	Annotated
85	OsMADS5	Os06g0162800	10.1111/j.1365-313X.2009.04101.x	Functional conservation and diversification of class E floral homeotic genes in rice (Oryza sativa)
86	SSIIa	Os06g0229800	10.1139/g11-010	Annotated
87	OsGSR1	Os06g0266800	10.1111/j.1365-313X.2008.03707.x	OsGSR1 is involved in crosstalk between gibberellins and brassinosteroids in rice
89	HDA702	Os06g0583400	10.1016/j.bbrc.2009.07.162	Annotation
90	OsPNH1	Os06g0597400	10.1046/j.1365-313X.2002.01279.x	OsPNH1 regulates leaf development and maintenance of the shoot apical meristem in rice
91	OsPLDα4	Os06g0604200	10.1104/pp.111.183749	The Chloroplast-Localized Phospholipases D a4 and a5 Regulate Herbivore-Induced Direct and Indirect Defenses in Rice
92	OsPLDα5	Os06g0604300	10.1104/pp.111.183749	The Chloroplast-Localized Phospholipases D a4 and a5 Regulate Herbivore-Induced Direct and Indirect Defenses in Rice
93	OsLIC	Os06g0704300	10.1371/journal.pone.0003521	OsLIC, a Novel CCCH-Type Zinc Finger Protein with Transcription Activation, Mediates Rice Architecture via Brassinosteroids Signaling
94	OsEIN2	Os07g0155600	10.1104/pp.109.152702	Annotated
95	HDA704	Os07g0164100	10.1016/j.bbrc.2009.07.162	Rice histone deacetylase genes display specific expression patterns and developmental functions
96	RISBZ1	Os07g0182000	10.1111/j.1365-313X.2009.03925.x	Annotated
97	NDP kinase	Os07g0492000	10.1104/pp.122.2.447	Annotated
98	OsDR8	Os07g0529600	10.1007/s11103-005-4770-x	Annotated
99	OsFOR1	Os07g0568700	10.1023/B:PLAN.0000006940.89955.f1	Annotated
100	OsBZR1	Os07g0580500	10.1073/pnas.0706386104	Functions of OsBZR1 and 14-3-3 proteins in brassinosteroid signaling in rice
101	Osppc4	Os01g0208700	10.1073/pnas.0913127107	Phosphoenolpyruvate carboxylase intrinsically located in the chloroplast of rice plays a crucial role in ammonium assimilation
102	OsPDK1	Os07g0637300	10.1093/pcp/pci241	Gibberellin Regulates Mitochondrial Pyruvate Dehydrogenase Activity in Rice
103	OsBLE2	Os07g0650600	10.1023/A:1025001304994	A novel brassinolide-enhanced gene identified by cDNA microarray is involved in the growth of rice
104	aldolase	Os07g0650600	10.1007/s11103-004-5920-2	Characterization of fructose-bisphosphate aldolase regulated by gibberellin in roots of rice seedling
105	rtGA2.1	Os07g0687700	10.1111/j.1365-313X.2005.02457.x	Alteration of TGA factor activity in rice results in enhanced tolerance to Xanthomonas oryzae pv. oryzae
106	OsFAD8	Os07g0693800	10.1093/pcp/pcm107	Annotated
107	OsApx2	Os07g0694700	10.1016/j.phytochem.2010.01.003	Annotated
108	APx2	Os07g0694700	10.1111/j.1365-3040.2011.02366.x	Annotated
109	OsDEG10	Os08g0139000	10.1016/j.bbrc.2009.01.131	Annotated
110	OsDR10	Os08g0155900	10.1371/journal.pone.0004603	A Rice Gene of De Novo Origin Negatively Regulates Pathogen-Induced Defense Response
111	OsBAK1	Os08g0174700	10.1111/j.1467-7652.2009.00444.x	Annotated
112	OsGLP8	Os08g0189200	10.1104/pp.108.128348	A Germin-Like Protein Gene Family Functions as a Complex Quantitative Trait Locus Conferring Broad-Spectrum Disease Resistance in Rice
113	SSIIIa	Os08g0191433	10.1139/g11-010	Double repression of soluble starch synthase genes SSIIa and SSIIIa in rice (Oryza sativa L.) uncovers interactive effects on the physicochemical properties of starch
114	OsRAD21-3	Os08g0266700	10.1111/j.1365-313X.2007.03190.x	OsRAD21-3, an orthologue of yeast RAD21, is required for pollen development in Oryza sativa
115	OsCCC1	Os08g0323700	10.1007/s11103-011-9744-6	Annotated
116	OsrbohE	Os08g0453733	10.5511/plantbiotechnology.22.127	Function of the rice gp91phox homologs OsrbohA and OsrbohE genes in ROS-dependent plant immune responses
117	OsHI-LOX	Os08g0508800	10.1111/j.1365-313X.2009.03988.x	Silencing OsHI-LOX makes rice more susceptible to chewing herbivores, but enhances resistance to a phloem feeder
118	OsAPx-R	Os08g0522400	10.1111/j.1469-8137.2011.03659.x	Ascorbate peroxidase-related (APx-R) is a new hemecontaining protein functionally associated with ascorbate peroxidase but evolutionarily divergent
119	OsMADS7	Os08g0531700	10.1111/j.1365-313X.2009.04101.x	Annotated
120	Os8N3	Os08g0535200	10.1073/pnas.0604088103	Annotated
121	OsCERK1	Os08g0538300	10.1111/j.1365-313X.2010.04324.x	Two LysM receptor molecules, CEBiP and OsCERK1,cooperatively regulate chitin elicitor signaling in rice
122	OsSPY	Os08g0559300	10.1111/j.1365-313X.2006.02875.x	Annotated
123	OsPT6	Os08g0564000	10.1111/j.1365-313X.2008.03726.x	Two rice phosphate transporters, OsPht1;2 and OsPht1;6, have different functions and kinetic properties in uptake and translocation
124	OsMADS8	Os09g0507200	10.1111/j.1365-313X.2009.04101.x	Functional conservation and diversification of class E floral homeotic genes in rice (Oryza sativa)
125	OsSGT1	Os09g0518200	10.1111/j.1365-313X.2008.03697.x	Functional conservation and diversification of class E floral homeotic genes in rice (Oryza sativa)
126	OsGEN-L	Os09g0521900	10.1093/pcp/pci090	RNAi-mediated Silencing of OsGEN-L (OsGEN-like), a New Member of the RAD2/XPG Nuclease Family, Causes Male Sterility by Defect of Microspore Development in Rice
128	Ugp1	Os09g0553200	10.1105/tpc.106.044123	Rice UDP-Glucose Pyrophosphorylase1 Is Essential for Pollen Callose Deposition and Its Cosuppression Results in a New Type of Thermosensitive Genic Male Sterility
129	OsRCCR1	Os10g0389200	10.1016/j.jplph.2011.05.026	Knockdown of OsPAO and OsRCCR1 cause different plant death phenotypes in rice
130	EBL1	Os10g0390800	10.1007/s10529-010-0405-7	Phytochrome-regulated EBL1 contributes to ACO1 upregulation in rice
131	OsDCL3b	Os10g0485600	10.1111/j.1365-313X.2011.04805.x	Roles of DCL4 and DCL3b in rice phased small RNA biogenesis
132	OsPLDbeta1	Os10g0524400	10.1104/pp.108.131979	Suppression of a Phospholipase D Gene, OsPLDb1,Activates Defense Responses and Increases Disease Resistance in Rice
134	SPK	Os10g0539600	10.1093/pcp/pch122	A Rice Antisense SPK Transformant that Lacks the Accumulation of Seed Storage Substances Shows no Correlation Between Sucrose Concentration in Phloem Sap and Demand for Carbon Sources in the Sink Organs
135	OsMPK5	Os11g0684000	10.1104/pp.109.152702	Abscisic Acid-Induced Resistance against the Brown Spot Pathogen Cochliobolus miyabeanus in Rice Involves MAP Kinase-Mediated Repression of Ethylene Signaling
136	OsDMC1	Os12g0143800	10.1007/s11103-007-9195-2	OsDMC1 is required for homologous pairing in Oryza sativa
137	Ostrxm	Os12g0188700	10.1104/pp.108.123547	Abnormal Chloroplast Development and Growth Inhibition in Rice Thioredoxin m Knock-Down Plants
139	OsRBCS2	Os12g0274700	10.1111/j.1365-3040.2011.02434.x	Effect of individual suppression of RBCS multigene family on Rubisco contents in rice leavespce_2434 546..553
143	OsTDL1A	Os12g0472500	10.1111/j.1365-313X.2008.03426.x	Annotated
144	OsSpo11-4	Os12g0622500	10.1371/journal.pone.0020327	Annotated
145	OsDOS	Os01g0192000	10.1104/pp.106.082941	Annotated
146	OsNPR1	Os01g0194300	10.1007/s11103-010-9695-3	Annotated
147	OsRac1	Os01g0229400	10.1073/pnas.98.2.759	Essential role of the small GTPase Rac in disease resistance of rice
148	Rdd1	Os01g0264000	10.1111/j.1365-3040.2009.01954.x	Circadian clock- and phytochrome-regulated Dof-like gene,Rdd1, is associated with grain size in rice
149	OsLOL2	Os01g0612700	10.1007/s00438-007-0232-2	The rice OsLOL2 gene encodes a zinc Wnger protein involved in rice growth and disease resistance
150	OsYUCCA1	Os01g0645400	10.1104/pp.106.091561	Auxin Biosynthesis by the YUCCA Genes in Rice
151	PME1	Os01g0788400	10.1111/j.1365-313X.2011.04486.x	Methanol is an endogenous elicitor molecule for the synthesis of tryptophan and tryptophan-derived secondary metabolites upon senescence of detached rice leaves
152	OsABI5	Os01g0859300	10.1007/s11103-008-9298-4	Annotated
153	OsNAC6	Os01g0884300	10.1111/j.1365-313X.2009.03908.x	Annotated
154	OsIRO2	Os01g0952800	10.1111/j.1365-313X.2007.03149.x	Annotated
155	BiP1	Os02g0115900	10.1111/j.1365-313X.2010.04453.x	Annotated
156	OsYSL2	Os02g0649900	10.1111/j.1365-313X.2010.04158.x	Annotated
157	ARAG1	Os02g0657000	10.1093/aob/mcp303	Annotated
158	OsPIP1;1	Os02g0666200	10.1038/cr.2007.34	Annotated
159	OsDHODH1	Os02g0736400	10.1111/j.1744-7909.2009.00853.x	Annotated
160	OsPIN1	Os02g0743400	10.1093/pcp/pci183	Annotated
161	OsMADS22	Os02g0761000	10.1111/j.1365-313X.2008.03406.x	Rice SVP-group MADS-box proteins, OsMADS22 and OsMADS55, are negative regulators of brassinosteroid responses
162	AmyI-1	Os02g0765600	10.1093/pcp/pci091	Annotated
163	OsPIP1;3	Os02g0823100	10.1038/cr.2007.34	Annotated
164	OsACDR1	Os03g0160100	10.1007/s10059-009-0161-5	Annotated
165	OsBRR1	Os03g0228800	10.1007/s00425-009-0951-1	A putative leucine-rich repeat receptor kinase, OsBRR1, is involved in rice blast resistance
166	OsMAPK5	Os03g0285800	10.1105/tpc.008714	Annotation
167	OsWRKY31	Os03g0321700	10.1038/cr.2007.104	Constitutive expression of pathogen-inducible OsWRKY31 enhances disease resistance and affects root growth and auxin response in transgenic rice plants
168	OsDIS1	Os03g0356414	10.1104/pp.111.180893	The SINA E3 Ligase OsDIS1 Negatively Regulates Drought Response in Rice
169	OsLOX1	Os03g0700700	10.1007/s11103-007-9278-0	A novel lipoxygenase gene from developing rice seeds confers dual position specificity and responds to wounding and insect attack
170	OsSrt1	Os04g0271000	10.1104/pp.107.099473	Down-Regulation of a SILENT INFORMATION REGULATOR2-Related Histone Deacetylase Gene, OsSRT1, Induces DNA Fragmentation and Cell Death in Rice
171	RERJ1	Os04g0301500	10.1016/j.bbrc.2004.10.126	Annotated
172	OsGA2ox6	Os04g0522500	10.1016/S1673-8527(09)60022-9	Annotated
173	RFL	Os04g0598300	10.1073/pnas.0709059105	Annotated
174	OsrcaA2	Os04g0658300	10.1006/bbrc.2001.6269	Annotated
175	OsMTP1	Os05g0128400	10.1007/s00299-011-1140-9	Annotated
176	OsWRKY45	Os05g0322900	10.1093/jxb/err144	Annotated
177	OsEXP4	Os05g0477600	10.1105/tpc.011965	Regulation of Expansin Gene Expression Affects Growth and Development in Transgenic Rice Plants
178	SDG728	Os05g0490700	10.1093/mp/ssq030	Rice SUVH Histone Methyltransferase Genes Display Specific Functions in Chromatin Modification and Retrotransposon Repression
179	OsRan2	Os05g0574500	10.1093/jxb/erp341	Annotation
180	OsMADS55	Os06g0217300	10.1111/j.1365-313X.2008.03406.x	Rice SVP-group MADS-box proteins, OsMADS22 and OsMADS55, are negative regulators of brassinosteroid responses
181	OsCIPK23	Os07g0150700	10.1016/S1673-8527(08)60073-9	Annotated
182	OsTRXh1	Os07g0186000	10.1104/pp.111.182808	Annotated
183	TDC	Os08g0140300	10.1104/pp.109.138552	Annotated
184	OsLSD1	Os08g0159500	10.1094/MPMI-18-0375	Overexpression of OsRAN2 in rice and Arabidopsis renders transgenic plants hypersensitive to salinity and osmotic stress
185	OsDERF1	Os08g0454000	10.1371/journal.pone.0025216	Annotated
186	OsGLP1	Os08g0460000	10.1016/j.bbrc.2010.02.142	Functional role of rice germin-like protein1 in regulation of plant height and disease resistance
187	OsPRP3	Os10g0148100	10.1007/s11103-009-9557-z	OsPRP3, a flower specific proline-rich protein of rice, determines extracellular matrix structure of floral organs and its overexpression confers cold-tolerance
188	OsPT8	Os10g0444700	10.1104/pp.111.175240	The Phosphate Transporter Gene OsPht1;8 Is Involved in Phosphate Homeostasis in Rice
189	OsWRKY89	Os11g0117400	10.1007/s11103-007-9244-x	Annotated
190	OsNAC5	Os11g0184900	10.1007/s00425-011-1403-2	Annotated
191	OsPCBP	Os11g0689300	10.1007/s12374-011-9184-5	A Calmodulin-Binding Protein from Rice is Essential to Pollen Development
192	OsrcaA1	Os11g0707000	10.1006/bbrc.2001.6269	Involvement of a Ca21-Dependent Protein Kinase Component Downstream to the Gibberellin-Binding Phosphoprotein, RuBisCO Activase, in Rice
193	sui1	Os01g0118300	10.1007/s11103-011-9825-6	Identification and characterization of SHORTENED UPPERMOST INTERNODE 1, a gene negatively regulating uppermost internode elongation in rice
194	Osjag	Os01g0129200	10.1007/s11103-010-9703-7	Molecular cloning and functional characterization of OsJAG gene based on a complete-deletion mutant in rice (Oryza sativa L.)
195	sl1	Os01g0129200	10.1111/j.1365-313X.2009.03913.x	STAMENLESS 1, encoding a single C2H2 zinc finger protein, regulates floral organ identity in rice
197	OsABCG31	Os01g0177900	10.1073/pnas.1108444108	Annotated
198	OsGI	Os01g0182600	10.1105/tpc.111.083238	Annotated
199	d2	Os01g0197100	10.1105/tpc.014712	Annotated
200	mads3	Os01g0201700	10.1105/tpc.110.074369	Annotated
201	OsGSK1	Os01g0205700	10.1007/s11103-007-9213-4	Annotated
202	nyc1	Os01g0227100	10.1105/tpc.106.042911	Annotated
203	OSH6	Os01g0302500	10.1007/s00425-007-0576-1	A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts,in rice
204	phd1	Os01g0367100	10.1371/journal.pgen.1002196	Annotated
205	dbs1	Os01g0513900	10.1093/pcp/pci206	The Rice Mutant dwarf bamboo shoot 1: A Leaky Mutant of the NACK-type Kinesin-like Gene Can Initiate Organ Primordia but not Organ Development
206	shl2	Os01g0527600	10.1073/pnas.0704339104		Finishend Annotated
207	osubp6	Os01g0550100	10.1007/s10059-009-0138-4	Structure and Expression of OsUBP6, an Ubiquitin-Specific Protease 6 Homolog in Rice (Oryza sativa L.)
208	log	Os01g0588900	10.1038/nature05504	Direct control of shoot meristem activity by a cytokinin-activating enzyme
209	osagpl2	Os01g0633100	10.1007/s11103-007-9153-z	Annotated
210	snl6	Os01g0639200	10.1371/journal.pgen.1001123	Annotated
211	Ostpc1	Os01g0678500	10.1093/pcp/pch082	Annotated
212	nadh-gogat1	Os01g0682001	10.1007/s00726-010-0531-5	Reverse genetics approach to characterize a function of NADH-glutamate synthase1 in rice plants
213	dgl1	Os01g0683100	10.1104/pp.105.062968	Analysis of the Rice Mutant dwarf and gladius leaf 1. Aberrant Katanin-Mediated Microtubule Organization Causes Up-Regulation of Gibberellin Biosynthetic Genes Independently of Gibberellin Signaling
214	spl28*	Os01g0703600	10.1111/j.1469-8137.2009.03047.x	Annotated
215	OsLFL	Os01g0713600	10.1016/j.jplph.2007.07.010	Overexpression of transcription factor OsLFL1 delays flowering time in Oryza sativa
216	d61	Os01g0718300	10.1105/tpc.12.9.1591	Annotated
217	d10	Os01g0746400	10.1111/j.1365-313X.2007.03210.x	Annotated
218	Bc7(t)	Os01g0750300	10.1016/S1673-8527(07)60115-5	Biochemical and molecular characterization of a rice glutelin allele for the GluA-1 gene
221	gamyb	Os01g0812000	10.1105/tpc.017327	Annotated
222	lax	Os01g0831000	10.1073/pnas.1932414100	Annotated
223	oscfbp1	Os01g0866400	10.1111/j.1365-3040.2008.01890.x	Annotated
224	Osabf1	Os01g0867300	10.1007/s11103-009-9592-9	Annotated
225	Os-pollux	Os01g0870100	10.1104/pp.108.131540	Antiquity and Function of CASTOR and POLLUX, the Twin Ion Channel-Encoding Genes Key to the Evolution of Root Symbioses in Plants
226	OsPdk1	Os01g0872800	10.1093/pcp/pcq167	Pdk1 Kinase Regulates Basal Disease Resistance Through the OsOxi1–OsPti1a Phosphorylation Cascade in Rice
227	Osspr1	Os01g0898300	10.1111/j.1469-8137.2010.03513.x	Annotated
228	eg1	Os01g0900400	10.1111/j.1365-313X.2008.03710.x	A putative lipase gene EXTRA GLUME1 regulates both empty-glume fate and spikelet development in rice
229	pla2	Os01g0907900	10.1105/tpc.105.037622	Annotated
230	lhd2	Os01g0907900	10.1038/sj.cr.7310034	Annotated
231	C3H12	Os01g0917400	10.1104/pp.111.191379	A CCCH-Type Zinc Finger Nucleic Acid-Binding Protein Quantitatively Confers Resistance against Rice Bacterial Blight Disease
232	msp1	Os01g0917500	10.1105/tpc.012401	The MSP1 Gene Is Necessary to Restrict the Number of Cells Entering into Male and Female Sporogenesis and to Initiate Anther Wall Formation in Rice
233	OsFRDL4	Os01g0919100	10.1111/j.1365-313X.2011.04757.x	An Al-inducible MATE gene is involved in external detoxification of Al in rice
234	OsSSI2	Os01g0919900	10.1094/MPMI-22-7-0820	Annotation
235	OsMADS51	Os01g0922800	10.1104/pp.107.103291	Annotated
236	se13	Os01g0949400	10.1007/s00122-010-1426-2	Complete loss of photoperiodic response in the rice mutant line X61 is caused by deWciency of phytochrome chromophore biosynthesis gene
237	LCD	Os01g0956700	10.1093/jxb/err300	Low cadmium (LCD), a novel gene related to cadmium tolerance and accumulation in rice
238	cde1(t)	Os02g0121000	10.1007/s00425-007-0525-z	Identification and fine mapping of a thermo-sensitive chlorophyll deficient mutant in rice (Oryza sativa L.)
239	nrat1	Os02g0131800	10.1073/pnas.1004949107	Annotated
240	lc2	Os02g0152500	10.1038/cr.2010.109	Annotated
241	Oscand1	Os02g0167700	10.1093/mp/ssq068	OsCAND1 Is Required for Crown Root Emergence in Rice
242	osgl1-2	Os02g0178800	10.1007/s11103-009-9483-0	Annotated
244	b-OsLCY	Os02g0190600	10.1111/j.1365-313X.2008.03411.x	Mutations of genes in synthesis of the carotenoid precursors of ABA lead to pre-harvest sprouting and photo-oxidation in rice
245	Docs1	Os02g0236100	10.1111/j.1365-313X.2011.04824.x	A leucine-rich repeat receptor-like kinase gene is involved in the specification of outer cell layers in rice roots
246	ep3	Os02g0260200	10.1007/s00122-009-1151-x	Annotated
247	lp	Os02g0260200	10.1111/j.1467-7652.2011.00610.x	Annotated
248	oscps1	Os02g0278700	10.1104/pp.103.033696	An Overview of Gibberellin Metabolism Enzyme Genes and Their Related Mutants in Rice
249	naat1	Os02g0306401	10.1104/pp.107.107912	Mutation in Nicotianamine Aminotransferase Stimulated the Fe(II) Acquisition System and Led to Iron Accumulation in Rice
250	api5	Os02g0313400	10.1105/tpc.110.082636	Annotated
251	cfl1	Os02g0516400	10.1105/tpc.111.088625	Annotated
252	osgtgamma-1	Os02g0542400	10.1007/s00438-009-0507-x	Systematic analysis of GT factor family of rice reveals a novel subfamily involved in stress responses
253	Oscyt-inv1	Os02g0550600	10.1007/s00425-008-0718-0	OsCYT-INV1 for alkaline/neutral invertase is involved in root cell development and reproductivity in rice (Oryza sativa L.)
254	cpt1	Os02g0568200	10.1105/tpc.104.028357	The Rice COLEOPTILE PHOTOTROPISM1 Gene Encoding an Ortholog of Arabidopsis NPH3 Is Required for Phototropism of Coleoptiles and Lateral Translocation of Auxin
255	rss1	Os02g0606700	10.1038/ncomms1279	Annotated
256	OsCOL4	Os02g0610500	10.1111/j.1365-313X.2010.04226.x	Annotated
257	du3	Os02g0612300	10.5511/plantbiotechnology.25.483	Du3, a mRNA cap-binding protein gene, regulates amylose content in Japonica rice seeds
258	bc14	Os02g0614100	10.1073/pnas.1016144108	Golgi nucleotide sugar transporter modulates cell wall biosynthesis and plant growth in rice
260	oul1	Os02g0674800	10.1104/pp.111.176016	Annotated
261	Roc5	Os02g0674800	10.1104/pp.111.176016	Annotated
262	mfo1	Os02g0682200	10.1105/tpc.109.068742	Annotated
263	osmads6	Os02g0682200	10.1111/j.1365-313X.2010.04354.x	Annotated
265	adl1	Os02g0709400	10.1016/j.ydbio.2009.07.042	Annotated
266	OsGS1;1	Os02g0735200	10.1111/j.1365-313X.2011.04506.x	Metabolomics data reveal a crucial role of cytosolic glutamine synthetase 1;1 in coordinating metabolic balance in rice
268	bc3	Os02g0738900	10.1007/s00425-010-1145-6	Annotated
269	dsm1	Os02g0743500	10.1104/pp.109.149856	Annotated
270	lsi1	Os02g0745100	10.1038/nature04590	A silicon transporter in rice
271	OsbZIP23	Os02g0766700	10.1104/pp.108.128199	Annotated
272	pps	Os02g0771100	10.1105/tpc.111.083436	The COP1 Ortholog PPS Regulates the Juvenile–Adult and Vegetative–Reproductive Phase Changes in Rice
273	Ossgo1	Os02g0799100	10.1111/j.1365-313X.2011.04615.x	Annotated
274	Ospho1;2	Os02g0809800	10.1104/pp.109.149872	Characterization of the Rice PHO1 Gene Family Reveals a Key Role for OsPHO1;2 in Phosphate Homeostasis and the Evolution of a Distinct Clade in Dicotyledons
275	osmyoXIB	Os02g0816900	10.1016/j.ydbio.2007.01.008	ORYZA SATIVA MYOSIN XI B controls pollen development by photoperiod-sensitive protein localizations
276	rtbp1	Os02g0817800	10.1105/tpc.107.051953	Suppression of RICE TELOMERE BINDING PROTEIN1 Results in Severe and Gradual Developmental Defects Accompanied by Genome Instability in Rice
277	lpa1	Os02g0819400	10.1007/s00122-008-0818-z	The rice OsLpa1 gene encodes a novel protein involved in phytic acid metabolism
278	dh1	Os02g0820500	10.1007/s11103-007-9283-3	DH1, a LOB domain-like protein required for glume formation in rice
279	Osa8	Os03g0100800	10.1093/jxb/ern298	Annotated
280	pair1	Os03g0106300	10.1105/tpc.020701	The Novel Gene HOMOLOGOUS PAIRING ABERRATION IN RICE MEIOSIS1 of Rice Encodes a Putative Coiled-Coil Protein Required for Homologous Chromosome Pairing in Meiosis
281	lsi2	Os03g0107300	10.1038/nature05964	An efflux transporter of silicon in rice
282	rim1	Os03g0119966	10.1111/j.1365-313X.2008.03712.x	Disruption of a novel gene for a NAC-domain protein in rice confers resistance to Rice dwarf virus
283	osmads50	Os03g0122600	10.1111/j.1365-313X.2004.02082.x	Annotated
284	dsm2	Os03g0125100	10.1104/pp.110.163741	Annotated
285	OsCYP96B4	Os03g0140400	10.1371/journal.pone.0028069	Annotated
286	XS-lpa2-1	Os03g0142800	10.1007/s00122-009-1018-1	Annotated
287	arl1	Os03g0149100	10.1111/j.1365-313X.2005.02434.x	Annotated
288	crl1	Os03g0149100	10.1105/tpc.105.030981	Annotated
289	OsEDR1	Os03g0160100	10.1111/j.1365-3040.2010.02219.x	OsEDR1 negatively regulates rice bacterial resistance via activation of ethylene biosynthesispce
290	oscow1	Os03g0162000	10.1007/s11103-007-9203-6	NARROW LEAF 7 controls leaf shape mediated by auxin in rice
291	nal7	Os03g0162000	10.1007/s00438-008-0328-3	NARROW LEAF 7 controls leaf shape mediated by auxin in rice
292	dpw	Os03g0167600	10.1105/tpc.111.087528	Defective Pollen Wall Is Required for Anther and Microspore Development in Rice and Encodes a Fatty Acyl Carrier Protein Reductase
293	cyp704B2	Os03g0168600	10.1105/tpc.109.070326	Annotated	Development
294	oni1	Os03g0181500	10.1111/j.1365-313X.2011.04530.x	Annotated
295	OsPDS	Os03g0184000	10.1111/j.1365-313X.2008.03411.x	Mutations of genes in synthesis of the carotenoid precursors of ABA lead to pre-harvest sprouting and photo-oxidation in rice
296	gid2	Os03g0196500	10.1126/science.1081077	Accumulation of Phosphorylated Repressor for Gibberellin Signaling in an F-box Mutant
297	d88	Os03g0203200	10.1007/s11103-009-9522-x	Annotated
298	htd2	Os03g0203200	10.1007/s00425-009-0975-6	Annotated
299	d14	Os03g0203200	10.1093/pcp/pcp091	Annotated
300	dl	Os03g0215200	10.1105/tpc.018044	Annotated
301	lhs1	Os03g0215400	10.1105/tpc.12.6.871	Annotated
302	OsFRDL1	Os03g0216700	10.1104/pp.108.128132	OsFRDL1 Is a Citrate Transporter Required for Efficient Translocation of Iron in Rice
303	dsm3	Os03g0230500	10.1007/s11103-011-9830-9	Annotated
304	Osapc6	Os03g0236966	10.1007/s10142-009-0155-6	A candidate gene OsAPC6 of anaphase-promoting complex of rice identified through T-DNA insertion
305	rcn1	Os03g0281900	10.1111/j.1469-8137.2008.02724.x	Annotated
306	mit	Os03g0296800	10.1038/ncomms1326	The rice mitochondrial iron transporter is essential for plant growth
307	ssd1	Os03g0302900	10.2183/pjab.86.265	SSD1, which encodes a plant-specific novel protein, controls plant elongation by regulating cell division in rice
308	phyB	Os03g0309200	10.1105/tpc.105.035899	Annotated
309	oscipk31	Os03g0319400	10.1007/s10059-010-0084-1	Annotated
310	v2	Os03g0320900	10.1111/j.1365-313X.2007.03251.x	The rice nuclear gene, VIRESCENT 2, is essential for chloroplast development and encodes a novel type of guanylate kinase targeted to plastids and mitochondria
311	OschlH	Os03g0323200	10.1093/pcp/pcg064	Characterization of a Rice Chlorophyll-Deficient Mutant Using the T-DNA Gene-Trap System
312	glu1	Os03g0329500	10.1007/s11103-005-2972-x	Annotated
313	cwa1/bc1	Os03g0416200	10.1007/s00425-010-1171-4	Isolation of a novel cell wall architecture mutant of rice with defective Arabidopsis COBL4 ortholog BC1 required for regulated deposition of secondary cell wall components
314	glup4	Os03g0427300	10.1270/jsbbs.60.556	Characterization of the rice glup4 mutant suggests a role for the small GTPase Rab5 in the biosynthesis of carbon and nitrogen storage reserves in developing endosperm
315	OsAGO7	Os03g0449200	10.1007/s00425-006-0472-0	Annotated
316	shl4/sho2	Os03g0449200	10.1073/pnas.0704339104	Annotated
317	chl9	Os03g0563300	10.1007/s11103-006-9024-z	Rice Chlorina-1 and Chlorina-9 encode ChlD and ChlI subunits of Mg-chelatase, a key enzyme for chlorophyll synthesis and chloroplast development
318	pez1	Os03g0571900	10.1074/jbc.M111.221168	A Rice phenolic efflux transporter is essential for solubilizing precipitated apoplasmic iron in the plant stele
321	OsIAA11	Os03g0633500	10.1093/mp/ssr074	A Gain-of-Function Mutation in OsIAA11 Affects Lateral Root Development in Rice
322	Osam1	Os03g0650400	10.1038/cr.2011.7	OsAM1 is required for leptotene-zygotene transition in rice
323	nol1	Os03g0654600	10.1111/j.1365-313X.2008.03670.x	Two short-chain dehydrogenase/reductases, NON-YELLOW COLORING 1 and NYC1-LIKE, are required for chlorophyll b and light-harvesting complex II degradation during senescence in rice
324	v1	Os03g0656900	10.1111/j.1365-313X.2011.04755.x	Annotated
325	crl4	Os03g0666100	10.3117/plantroot.2.19	CRL4 regulates crown root formation through auxin transport in rice
327	fc1/OsTB1	Os03g0706500	10.1046/j.1365-313X.2003.01648.x	Annotated
328	slr1	Os03g0707600	10.1105/tpc.13.5.999	Annotated
329	Slr1-d	Os03g0707600	10.1007/s00438-008-0406-6	Annotated
330	phyA	Os03g0719800	10.1105/tpc.105.035899	Distinct and Cooperative Functions of Phytochromes A, B, and C in the Control of Deetiolation and Flowering in Rice
331	OsMIK	Os03g52760	10.1007/s00122-008-0863-7	Isolation and characterization of a low phytic acid rice mutant reveals a mutation in the rice orthologue of maize MIK
332	phyC	Os03g0752100	10.1105/tpc.105.035899	Distinct and Cooperative Functions of Phytochromes A, B, and C in the Control of Deetiolation and Flowering in Rice
333	pap2	Os03g0753100	10.1093/pcp/pcp166	Annotated
334	osmads34	Os03g0753100	10.1104/pp.110.156711	Annotated
335	pho1	Os03g0758100	10.1105/tpc.107.054007	Mutation of the Plastidial a-Glucan Phosphorylase Gene in Rice Affects the Synthesis and Structure of Starch in the Endosperm
336	bel	Os03g0760200	10.1007/s11103-006-0058-z	Annotated
337	DST	Os03g0786400	10.1101/gad.1812409	Annotated
338	pla3/gp	Os03g0790600	10.1111/j.1365-313X.2009.03841.x	PLASTOCHRON3/GOLIATH encodes a glutamate carboxypeptidase required for proper development in rice
339	el1	Os03g0793500	10.1038/emboj.2010.75	Annotated
340	chl1	Os03g0811100	10.1007/s11103-006-9024-z	Annotated
341	OsIDS1	Os03g0818800	10.1111/j.1365-313X.2011.04804.x	Two AP2 family genes, SUPERNUMERARY BRACT (SNB) and OsINDETERMINATE SPIKELET 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice
342	Xb15	Os03g0821300	10.1371/journal.pbio.0060231	Rice XB15, a Protein Phosphatase 2C, Negatively Regulates Cell Death and XA21-Mediated Innate Immunity Chang
343	Os-castor	Os03g0843600	10.1104/pp.108.131540	Antiquity and Function of CASTOR and POLLUX, the Twin Ion Channel-Encoding Genes Key to the Evolution of Root Symbioses in Plants
345	etr2	Os04g0169100	10.1105/tpc.108.065391	The Ethylene Receptor ETR2 Delays Floral Transition and Affects Starch Accumulation in Rice
346	OsYSL6	Os04g0390500	10.1104/pp.111.186031	* OsYSL6 Is Involved in the Detoxification of Excess Manganese in Rice1[W][OA]
347	lax2	Os04g0396500	10.1105/tpc.111.088765	LAX PANICLE2 of rice encodes a novel nuclear protein and regulates the formation of axillary meristems
348	ACL1	Os04g0415000	10.1093/mp/ssq022	Annotated
349	zep1	Os04g0452500	10.1105/tpc.109.070789	Annotated
350	tdd1	Os04g0463500	10.1111/j.1365-313X.2009.03952.x	A rice tryptophan deficient dwarf mutant, tdd1, contains a reduced level of indole acetic acid and develops abnormal flowers and organless embryos
351	d11	Os04g0469800	10.1105/tpc.104.024950	Annotated
352	OsGLU3	Os04g0497200	10.1093/mp/ssr084	OsGLU3, a putative membrane-bound endo-1,4-beta-glucanase, is required for root cell elongation and division in rice (Oryza sativa L.)
353	OsDCL4	Os04g0509300	10.1105/tpc.107.052209	Oryza sativa Dicer-like4 Reveals a Key Role for Small Interfering RNA Silencing in Plant Development
355	TOB1	Os04g0536300	10.1105/tpc.111.094797	The YABBY Gene TONGARI-BOUSHI1 Is Involved in Lateral Organ Development and Maintenance of Meristem Organization in the Rice Spikelet
356	Osvpe1	Os04g0537900	10.1111/j.1365-313X.2009.03801.x	The vacuolar processing enzyme OsVPE1 is required for efficient glutelin processing in rice
357	d17	Os04g0550600	10.1038/nature07272	Inhibition of shoot branching by new terpenoid plant hormones
359	OsCPK12	Os04g0560600	10.1111/j.1365-313X.2011.04766.x	Annotated
360	glr3.1	Os04g0585200	10.1105/tpc.105.037713	Annotated
361	apo2	Os04g0598300	10.1111/j.1365-313X.2011.04781.x	ABERRANT PANICLE ORGANIZATION 2/RFL, the rice ortholog of Arabidopsis LEAFY, suppresses the transition from inflorescence meristem to floral meristem through interaction with APO1
362	rlin1	Os04g0610800	10.1016/j.jcg.2010.12.001	RLIN1, encoding a putative coproporphyrinogen III oxidase, is involved in lesion initiation in rice
363	osks1	Os04g0611800	10.1104/pp.103.033696	An Overview of Gibberellin Metabolism Enzyme Genes and Their Related Mutants in Rice
364	fc1	Os04g0612700	10.1007/s11103-008-9448-8	FLEXIBLE CULM 1 encoding a cinnamyl-alcohol dehydrogenase controls culm mechanical strength in rice
366	ili1	Os04g0641700	10.1105/tpc.109.070441	Antagonistic HLH/bHLH Transcription Factors Mediate Brassinosteroid Regulation of Cell Elongation and Plant Development in Rice and Arabidopsis
367	flo2	Os04g0645100	10.1105/tpc.109.070821	Annotation
368	OsCP1	Os04g0670500	10.1023/B:PLAN.0000040904.15329.29	Isolation and characterization of a rice cysteine protease gene, OsCP1, using T-DNA gene-trap system
369	OsARF12	Os04g0671900	10.1111/j.1469-8137.2011.03910.x	Annotation
370	OsMKP1	Os05g0115800	10.1093/pcp/pcm007	A Calmodulin-Binding Mitogen-Activated Protein Kinase Phosphatase is Induced by Wounding and Regulates the Activities of Stress-Related Mitogen-Activated Protein Kinases in Rice
371	rsr1	Os05g0121600	10.1104/pp.110.159517	Coexpression Analysis Identifies Rice Starch Regulator1, a Rice AP2/EREBP Family Transcription Factor, as a Novel Rice Starch Biosynthesis Regulator1
372	siz1	Os05g0125000	10.1111/j.1469-8137.2010.03538.x	Annotation
373	srs3	Os05g0154700	10.1093/pcp/pcq092	Annotation
374	bc10	Os05g0170000	10.1111/j.1365-313X.2008.03703.x	BC10, a DUF266-containing and Golgi-located type II membrane protein, is required for cell-wall biosynthesis in rice (Oryza sativa L.)
375	mads58	Os05g0203800	10.1105/tpc.111.087262	??Rice MADS6 Interacts with the Floral Homeotic Genes SUPERWOMAN1, MADS3, MADS58, MADS13, and DROOPING LEAF in Specifying Floral Organ Identities and Meristem Fate
376	d1	Os05g0333200	10.1073/pnas.96.18.10284	Annotation
377	ygl1	Os05g0349700	10.1104/pp.107.100321	Annotation
378	OsImpβ1	Os05g0353400	10.1007/s10059-011-2321-7	Rice Importin β1 Gene Affects Pollen Tube Elongation
379	osbc1l4	Os05g0386800	10.1007/s11103-009-9537-3	Molecular characterization, expression pattern, and function analysis of the OsBC1L family in rice
380	flo4	Os05g0405000	10.1111/j.1365-313X.2005.02423.x	White-core endosperm floury endosperm-4 in rice is generated by knockout mutations in the C4-type pyruvate orthophosphate dikinase gene (OsPPDKB)
382	gid1	Os05g0407500	10.1038/nature04028	Annotation
383	DNG701	Os05g0446000	10.1073/pnas.1112704108	A 5-methylcytosine DNA glycosylase/lyase demethylates the retrotransposon Tos17 and promotes its transposition in rice
384	bgl	Os05g0454200	10.1007/s11103-011-9839-0	The rice bright green leaf (bgl) locus encodes OsRopGEF10, which activates the development of small cuticular papillae on leaf surfaces
385	oszip5	Os05g0472700	10.1007/s11103-010-9637-0	OsZIP5 is a plasma membrane zinc transporter in rice
386	eui1	Os05g0482400	10.1093/pcp/pci233	Annotation
389	spl7	Os05g0530400	10.1073/pnas.112209199	Annotation
390	snrk1a	Os05g0530500	10.1105/tpc.105.037887	The SnRK1A Protein Kinase Plays a Key Role in Sugar Signaling during Germination and Seedling Growth of Rice
391	ltn1	Os05g0557700	10.1104/pp.110.170209	Annotated
392	nl1	Os05g0578900	10.1038/cr.2009.36	NECK LEAF 1, a GATA type transcription factor, modulates organogenesis by regulating the expression of multiple regulatory genes during reproductive development in rice
393	Osrec8	Os05g0580500	10.1104/pp.111.177428	Annotated
394	osjar1	Os05g0586200	10.1111/j.1365-3040.2008.01790.x	Annotated
395	Osexpa17	Os06g0108600	10.1111/j.1365-313X.2011.04533.x	Root hair-specific expansins modulate root hair elongation in rice
398	zn	Os06g0116400	10.1111/j.1365-313X.2010.04183.x	ZEBRA-NECROSIS, a thylakoid-bound protein, is critical for the photoprotection of developing chloroplasts during early leaf development
399	osbbi1	Os06g0125800	10.1038/cr.2011.4	Annotated
400	d62/dlt	Os06g0127800	10.1007/s00425-010-1263-1	Annotated
402	sik1	Os06g0130100	10.1111/j.1365-313X.2010.04146.x	Annotated
403	dp1	Os06g0136900	10.1016/j.ydbio.2011.08.023	An AT-hook gene is required for palea formation and floral organ number control in rice
404	d3	Os06g0154200	10.1093/pcp/pci022	Suppression of Tiller Bud Activity in Tillering Dwarf Mutants of Rice
405	OsSSI	Os06g0160700	10.1104/pp.105.071845	Annotated
406	v3	Os06g0168600	10.1104/pp.109.136648	Rice Virescent3 and Stripe1 Encoding the Large and Small Subunits of Ribonucleotide Reductase Are Required for Chloroplast Biogenesis during Early Leaf Development
407	aid1	Os06g0181300	10.1104/pp.104.041459	The ANTHER INDEHISCENCE1 Gene Encoding a Single MYB Domain Protein Is Involved in Anther Development in Rice
408	abl1	Os06g0211200	10.1104/pp.111.173427	Annotated
409	Osabf2	Os06g0211200	10.1016/j.jplph.2010.05.008	Annotated
410	lsi6	Os06g0228200	10.1105/tpc.108.059311	A Transporter Regulating Silicon Distribution in Rice Shoots
411	st1	Os06g0257450	10.1104/pp.109.136648	Rice Virescent3 and Stripe1 Encoding the Large and Small Subunits of Ribonucleotide Reductase Are Required for Chloroplast Biogenesis during Early Leaf Development
412	nyc3	Os06g0354700	10.1111/j.1365-313X.2009.03919.x	Defect in non-yellow coloring 3, an a/b hydrolase-fold family protein, causes a stay-green phenotype during leaf senescence in rice
413	d35	Os06g0569500	10.1023/B:PLAN.0000038261.21060.47	Annotated
414	OsIAA23	Os06g0597000	10.1111/j.1365-313X.2011.04698.x	Annotated
415	se5	Os06g0603000	10.1046/j.1365-313X.2000.00753.x	Annotated
416	moc1	Os06g0610350	10.1038/nature01518	Annotated
417	spp	Os06g0625400	10.1093/pcp/pcq012	A Rice Stromal Processing Peptidase Regulates Chloroplast and Root Development
418	apo1	Os06g0665400	10.1111/j.1365-313X.2007.03200.x	Rice ABERRANT PANICLE ORGANIZATION 1, encoding an F-box protein, regulates meristem fate
419	oshma9	Os06g0665800	10.1104/pp.107.102236	Annotated
420	dep3	Os06g0677000	10.1007/s00122-011-1543-6	Fine mapping and candidate gene analysis of dense and erect panicle 3, DEP3, which confers high grain yield in rice (Oryza sativa L.)
421	star1	Os06g0695800	10.1105/tpc.108.064543	Annotated
422	OsHMA2	Os06g0700700	10.1093/pcp/pcr166	Annotated
423	oshkt2;1	Os06g0701700	10.1038/sj.emboj.7601732	Annotated
424	spw1	Os06g0712700	10.1242/dev.00294	Annotated
425	fon1	Os06g0717200	10.1242/dev.01441	The gene FLORAL ORGAN NUMBER1 regulates floral meristem size in rice and encodes a leucine-rich repeat receptor kinase orthologous to Arabidopsis CLAVATA1
426	ila1	Os06g0724900	10.1105/tpc.111.093419	Annotated
427	GA2ox5	Os07g0103500	10.1105/tpc.108.060913	A Novel Class of Gibberellin 2-Oxidases Control Semidwarfism, Tillering, and Root Development in Rice
428	crl5	Os07g0124700	10.1111/j.1365-313X.2011.04610.x		* Finished
429	g1	Os07g0139300	10.1073/pnas.0907896106	The homeotic gene long sterile lemma (G1) specifies sterile lemma identity in the rice spikelet
430	waf1	Os07g0164000	10.1104/pp.110.160234	Annotated
431	osku70	Os07g0184900	10.1104/pp.109.150391	OsKu70 Is Associated with Developmental Growth and Genome Stability in Rice
432	OsPHF1	Os07g0187700	10.1104/pp.111.181669	OsPHF1 Regulates the Plasma Membrane Localization of Low- and High-Affinity Inorganic Phosphate Transporters and Determines Inorganic Phosphate Uptake and Translocation in Rice
433	STR2	Os07g0191600	10.1111/j.1365-313X.2011.04842.x	The half-size ABC transporters STR1 and STR2 are indispensable for mycorrhizal arbuscule formation in rice
434	OsZDS	Os07g0204900	10.1111/j.1365-313X.2008.03411.x	Mutations of genes in synthesis of the carotenoid precursors of ABA lead to pre-harvest sprouting and photo-oxidation in rice
435	sh-h	Os07g0207700	10.1111/j.1365-313X.2009.04039.x	Inactivation of the CTD phosphatase-like gene OsCPL1 enhances the development of the abscission layer and seed shattering in rice
436	OsZIP8	Os07g0232800	10.1007/s10059-010-0069-0	Zinc Deficiency-Inducible OsZIP8 Encodes a Plasma Membrane-Localized Zinc Transporter in Rice
437	snb	Os07g0235800	10.1111/j.1365-313X.2006.02941.x	The rice heterochronic gene SUPERNUMERARY BRACT regulates the transition from spikelet meristem to floral meristem
438	oscbt	Os07g0490200	10.1007/s10059-009-0081-4	The Calmodulin-Binding Transcription Factor OsCBT Suppresses Defense Responses to Pathogens in Rice
439	oswrky78	Os07g0583700	10.1007/s00425-011-1423-y	The WRKY transcription factor OsWRKY78 regulates stem elongation and seed development in rice
440	bui1	Os07g0596300	10.1105/tpc.110.081802	Annotated
441	dep2	Os07g0616000	10.1038/cr.2010.69	Annotated
442	srs1	Os07g0616000	10.1266/ggs.85.327	Annotated
445	rth1	Os07g0682800	10.1270/jsbbs.59.13	Annotated
446	wox11	Os07g0684900	10.1105/tpc.108.061655	The WUSCHEL-Related Homeobox Gene WOX11 Is Required to Activate Shoot-Borne Crown Root Development in Rice
447	OsNAS3	Os07g0689600	10.1073/pnas.0910950106	Iron fortification of rice seeds through activation of the nicotianamine synthase gene
448	ehd3	Os08g0105000	10.1111/j.1365-313X.2011.04517.x	Annotated
449	pss1	Os08g0117000	10.1105/tpc.109.073692	Annotated
450	cyp703a3	Os08g0131100	10.1105/tpc.108.062935	Annotated
451	crr6	Os08g0167500	10.1111/j.1365-313X.2011.04747.x	Annotated
453	ss3a	Os08g0191433	10.1093/jxb/err125	Annotated
454	osagps2	Os08g0345800	10.1007/s11103-007-9153-z	Annotated
455	GF14c	Os08g0430500	10.1093/pcp/pcp012	The 14-3-3 Protein GF14c Acts as a Negative Regulator of Flowering in Rice by Interacting with the Florigen Hd3a
456	coe1	Os08g0442700	10.1111/j.1365-313X.2010.04250.x	COE1, an LRR–RLK responsible for commissural vein pattern formation in rice
457	bc12	Os09g0114500	10.1111/j.1365-313X.2010.04238.x	Annotated
458	gdd1	Os09g0114500	10.1105/tpc.110.081901	Annotated
459	sll1	Os09g0395300	10.1105/tpc.108.061457	Annotated
460	rl9	Os09g0395300	10.1007/s11103-008-9365-x	Annotated
461	STR1	Os09g0401100	10.1111/j.1365-313X.2011.04842.x	Annotated
462	rep1	Os09g0410500	10.1104/pp.108.128231	RETARDED PALEA1 Controls Palea Development and Floral Zygomorphy in Rice
463	bc6	Os09g0422500	10.1093/jxb/erq395	Annotated
464	OsCesA9	Os09g0422500	10.1104/pp.103.022442	Annotated
465	osgl1-1	Os09g0426800	10.1093/mp/ssr028	Annotated
466	wsl2	Os09g0426800	10.1007/s00425-011-1481-1	Annotated
470	PTC1	Os09g0449000	10.1104/pp.111.175760	Annotated
471	aco1	Os09g0451000	10.1111/j.1365-3040.2009.02106.x	ACO1, a gene for aminocyclopropane-1-carboxylate oxidase: effects on internode elongation at the heading stage in rice
472	isa3	Os09g0469400	10.1093/pcp/pcr058	Rice Debranching Enzyme Isoamylase3 Facilitates Starch Metabolism and Affects Plastid Morphogenesis
473	gna1	Os09g0488000	10.1104/pp.104.058248	A Novel Short-Root Gene Encodes a Glucosamine-6-Phosphate Acetyltransferase Required for Maintaining Normal Root Cell Shape in Rice
474	PAIR2	Os09g0506800	10.1007/s00438-003-0934-z	An insertional mutation in the rice PAIR2 gene, the ortholog of Arabidopsis ASY1, results in a defect in homologous chromosome pairing during meiosis
475	sgr	Os09g0532000	10.1105/tpc.106.044891	The Senescence-Induced Staygreen Protein Regulates Chlorophyll Degradation
476	OsAT1/Spl18	Os10g0195600	10.1007/s11103-006-9130-y	Isolation and molecular characterization of a Spotted leaf 18 mutant by modified activation-tagging in rice
477	brd2	Os10g0397400	10.1105/tpc.105.030973	Annotated
478	pla1	Os10g0403000	10.1073/pnas.2636936100	Annotated
479	pair3	Os10g0405500	10.1111/j.1365-313X.2009.03870.x	Annotated
480	ehd2	Os10g0419200	10.1104/pp.108.125542	Annotated
481	rid1	Os10g0419200	10.1073/pnas.0806019105	Annotated
482	OsCesA7	Os10g0467800	10.1104/pp.103.022442	Annotated
483	wda1	Os10g0471100	10.1105/tpc.106.042044	Wax-deficient anther1 Is Involved in Cuticle and Wax Production in Rice Anther Walls and Is Required for Pollen Development
484	OsMPK6	Os10g0533600	10.1007/s00425-007-0541-z	Annotated
485	OsCAO1	Os10g0567200	10.1007/s11103-005-2066-9	Annotated
486	cao	Os10g0567400	10.1270/jsbbs.55.361	Annotated
487	jmj6	Os10g0577600	10.1073/pnas.0805901105	Annotated
488	OsCSLD1	Os10g0578200	10.1104/pp.106.091546	OsCSLD1, a Cellulose Synthase-Like D1 Gene, Is Required for Root Hair Morphogenesis in Rice
489	phot1a	Os11g0102200	10.1007/s11103-008-9442-1	Rice phot1a mutation reduces plant growth by affecting photosynthetic responses to light during early seedling growth
490	OsPK1	Os11g0148500	10.1007/s00425-011-1471-3	Annotated
491	PDIL1	Os11g0199200	10.1093/jxb/err262	The failure to express a protein disulphide isomerase-like protein results in a floury endosperm and an endoplasmic reticulum stress response in rice
492	rad	Os11g0210300	10.1270/jsbbs.56.69	Annotated
493	sp1	Os11g0235200	10.1111/j.1365-313X.2009.03799.x	Annotated
494	Tid1	Os11g0247300	10.1266/ggs.84.209	Annotated
495	nls1-1D	Os11g0249000	10.1111/j.1365-313X.2011.04557.x	Annotated
496	lazy1	Os11g0490600	10.1038/cr.2007.38	Annotated
497	osarf1	Os11g0523800	10.1007/s11103-009-9474-1	Annotated
498	tld1-D	Os11g0528700	10.1104/pp.109.146803	Altered Architecture and Enhanced Drought Tolerance in Rice via the Down-Regulation of Indole-3-Acetic Acid by TLD1/OsGH3.13 Activation
501	d27	Os11g0587000	10.1105/tpc.109.065987	Annotated
502	fon2	Os11g0595400	10.1093/pcp/pcl025	Conservation and Diversification of Meristem Maintenance Mechanism in Oryza sativa: Function of the FLORAL ORGAN NUMBER2 Gene
503	wdl1	Os11g0708400	10.1007/s11103-010-9656-x	Mutation in Wilted Dwarf and Lethal 1 (WDL1) causes abnormal cuticle formation and rapid water loss in rice
504	rip1	Os12g0132400	10.1093/pcp/pcl013	Rice Immature Pollen 1 (RIP1) is a Regulator of Late Pollen Development
505	art1	Os12g0170400	10.1105/tpc.109.070771	A Zinc Finger Transcription Factor ART1 Regulates Multiple Genes Implicated in Aluminum Tolerance in Rice
506	OsMADS13	Os12g0207000	10.1111/j.1365-313X.2007.03272.x	The D-lineage MADS-box gene OsMADS13 controls ovule identity in rice
507	ogr1	Os12g0270200	10.1111/j.1365-313X.2009.03909.x	Rice OGR1 encodes a pentatricopeptide repeat–DYW protein and is essential for RNA editing in mitochondria
508	osatg10b	Os12g0506800	10.1007/s10059-009-0006-2	Annotated
509	kch1	Os12g0547500	10.1093/jxb/erq164	A kinesin with calponin-homology domain is involved in premitotic nuclear migration
513	spl11	Os12g0570000	10.1105/tpc.108.058610	SPIN1, a K Homology Domain Protein Negatively Regulated and Ubiquitinated by the E3 Ubiquitin Ligase SPL11, Is Involved in Flowering Time Control in Rice
514	mel2	Os12g0572800	10.1371/journal.pgen.1001265	A Novel RNA-Recognition-Motif Protein Is Required for Premeiotic G1/S-Phase Transition in Rice (Oryza sativa L.)
515	gpa1	Os12g0631100	10.1111/j.1365-313X.2010.04370.x	OsRab5a regulates endomembrane organization and storage protein trafficking in rice endosperm cells
516	ossut2	Os12g0641400	10.1104/pp.111.176982	Annotated
517	d18	Os01g0177400	10.1073/pnas.141239398	Annotated
518	Gn1a	Os01g0197700	10.1126/science.1113373	Cytokinin Oxidase Regulates Rice Grain Production
520	SKC1	Os01g0307500	10.1038/ng1643	Annotated
521	PSR	Os01g0357100	10.1073/pnas.0504220102	Isolation of a rice regeneration quantitative trait loci gene and its application to transformation systems
522	SaF	Os01g0578500	10.1073/pnas.0810108105	Annotated
523	SaM	Os01g0578700	10.1073/pnas.0810108105	Hybrid male sterility in rice controlled by interaction between divergent alleles of two adjacent genes
524	Rd	Os01g0633500	10.1111/j.1365-313X.2006.02958.x	The Rc and Rd genes are involved in proanthocyanidin synthesis in rice pericarp
525	Pi37	Os01g0781700	10.1534/genetics.107.080648	The Blast Resistance Gene Pi37 Encodes a Nucleotide Binding Site–Leucine-Rich Repeat Protein and Is a Member of a Resistance Gene Cluster on Rice Chromosome 1
526	qSH1	Os01g0848400	10.1126/science.1126410	Annotated
527	qNPQ1-2	Os01g0869800	10.1073/pnas.1104809108		Finished
528	sd1	Os01g0883800	10.1038/416701a	Annotated
529	GW2	Os02g0244100	10.1038/ng2014	Annotated
530	Rf2	Os02g0274000	10.1111/j.1365-313X.2010.04427.x	The fertility restorer gene, Rf2, for Lead Rice-type cytoplasmic male sterility of rice encodes a mitochondrial glycine-rich protein
531	hbd2	Os02g0622100	10.1007/s00438-010-0514-y	Annotated
532	Pib	Os02g0818450	10.1046/j.1365-313X.1999.00498.x	The Pib gene for rice blast resistance belongs to the nucleotide binding and leucine-rich repeat class of plant disease resistance genes
533	qLTG3?1	Os03g0103300	10.1073/pnas.0805303105	Annotated
534	dth3	Os03g0122600	10.1007/s00299-011-1129-4	Annotated
535	GS3	Os03g0407400	10.1007/s00122-006-0218-1	Annotated
536	GRP162	Os03g0641300	10.1105/tpc.111.093211	The Rice Pentatricopeptide Repeat Protein RF5 Restores Fertility in Hong-Lian Cytoplasmic Male-Sterile Lines via a Complex with the Glycine-Rich Protein GRP162
537	LOX-3	Os03g0700400	10.1007/s12374-013-0085-7	Molecular genetic characterization of rice seed lipoxygenase 3 and assessment of its effects on seed longevity
538	Hd6	Os03g0762000	10.1073/pnas.111136798	Annotated
539	Bph14	Os03g0848700	10.1073/pnas.0912139106	Annotated
541	Pi21	Os04g0401000	10.1126/science.1175550	Annotated
542	GIF1	Os04g0413500	10.1038/ng.220	Annotated
543	Rf17	Os04g0475900	10.1073/pnas.0901860106	Suppressed expression of RETROGRADE-REGULATED MALE STERILITY restores pollen fertility in cytoplasmic male sterile rice plants
544	BET1	Os04g0477300	10.1104/pp.110.171470	Suppression of a NAC-Like Transcription Factor Gene Improves Boron-Toxicity Tolerance in Rice
545	OSB2	Os04g0557500	10.1093/pcp/pce128	The Purple leaf (Pl) Locus of Rice: the Plw Allele has a Complex Organization and Includes Two Genes Encoding Basic Helix-Loop-Helix Proteins Involved in Anthocyanin Biosynthesis
546	OSB1	Os04g0557800	10.1093/pcp/pce128	The Purple leaf (Pl) Locus of Rice: the Plw Allele has a Complex Organization and Includes Two Genes Encoding Basic Helix-Loop-Helix Proteins Involved in Anthocyanin Biosynthesis
547	Xa1	Os04g0622600	10.1073/pnas.95.4.1663	Annotated
548	sh4	Os04g0670900	10.1126/science.1123604	Rice Domestication by Reducing Shattering
549	Xa5	Os05g0107700	10.1094/MPMI.2004.17.12.1348	Annotated
550	GS5	Os05g0158500	10.1038/ng.977	Annotated
551	GW5	DQ991205	10.1038/cr.2008.307	Isolation and initial characterization of GW5, a major QTL associated with rice grain width and weight
552	qSW5	AB433345_DQ991205	10.1038/ng.169	Deletion in a gene associated with grain size increased yields during rice domestication
553	wx	Os06g0133000	10.1046/j.1365-313X.1995.7040613.x	Annotated
554	Hd3a	Os06g0157700	10.1093/pcp/pcf156	Annotated
555	DPL2	Os06g0184100	10.1073/pnas.1003124107	Rice pollen hybrid incompatibility caused by reciprocal gene loss of duplicated genes
556	S5	Os06g0213100	10.1073/pnas.0804761105	A triallelic system of S5 is a major regulator of the reproductive barrier and compatibility of indica–japonica hybrids in rice
557	ALK	Os06g0229800	10.1111/j.1744-7909.2011.01065.x	Annotated
558	Hd1	Os06g0275000	10.1105/tpc.12.12.2473	Annotated
559	Pi2	Os06g0286700	10.1094/MPMI-19-1216	Annotated
560	Pi9	Os06g0286700	10.1534/genetics.105.044891	Annotated
561	Pi25	Os06g0330100	10.1016/j.jgg.2011.03.010	Annotated
562	Pid3	Os06g0330100	10.1534/genetics.109.102871	Annotated
563	Pi-d2	Os06g0494100	10.1111/j.1365-313X.2006.02739.x	Annotated
564	Xa27	Os06g0598900	10.1038/nature03630	R gene expression induced by a type-III effector triggers disease resistance in rice
566	PROG1	Os07g0153600	10.1038/ng.197	Control of a key transition from prostrate to erect growth in rice domestication
567	Rc	Os07g0211500	10.1105/tpc.105.038430	Caught Red-Handed: Rc Encodes a Basic Helix-Loop-Helix Protein Conditioning Red Pericarp in Rice
569	OsHMA3	Os07g0232900	10.1073/pnas.1005396107	Annotated
571	Ghd7	Os07g0261200	10.1038/ng.143	Annotated
572	Sdr4	Os07g0585700	10.1073/pnas.0911965107	Annotated
573	Pi36	Os08g0150100	10.1534/genetics.107.075465	The in Silico Map-Based Cloning of Pi36, a Rice Coiled-Coil–Nucleotide-Binding Site–Leucine-Rich Repeat Gene That Confers Race-Specific Resistance to the Blast Fungus
574	DTH8	Os08g0174500	10.1104/pp.110.156943	Annotated
578	Badh2	Os08g0424500	10.1105/tpc.108.058917	Annotated
579	WFP	Os08g0509600	10.1038/ng.592	Annotated
580	IPA1	Os08g0509600	10.1038/ng.591	Annotated
581	xa13	Os08g0535200	10.1101/gad.1416306	Annotated
582	Sub1A	AAZ06207	10.1038/nature04920	Sub1A is an ethylene-response-factor-like gene that confers submergence tolerance to rice
584	DEP1	Os09g0441900	10.1038/ng.352	Annotated
585	TAC1	Os09g0529300	10.1111/j.1365-313X.2007.03284.x	Annotated
586	CPDphotolyase	Os10g0167600	10.1093/pcp/pch215	Annotated
588	Ehd1	Os10g0463400	10.1101/gad.1189604	Ehd1, a B-type response regulator in rice, confers short-day promotion of flowering and controls FT-like gene expression independently of Hd1
589	RF1A	Os10g0497300	10.1105/tpc.105.038240	Annotated
591	Rf-1	Os10g0497432	10.1046/j.1365-313X.2003.01961.x	Map-based cloning of a fertility restorer gene, Rf-1, in rice (Oryza sativa L.)
592	RF1B	Os10g0499500	10.1105/tpc.105.038240	Cytoplasmic Male Sterility of Rice with Boro II Cytoplasm Is Caused by a Cytotoxic Peptide and Is Restored by Two Related PPR Motif Genes via Distinct Modes of mRNA Silencing
593	Pia	Os11g0225100	10.1111/j.1365-313X.2011.04502.x	Annotated
594	Xa21	Os11g0559200	10.1126/science.270.5243.1804	Annotated
595	Pb1	Os11g0598500	10.1111/j.1365-313X.2010.04348.x	Durable panicle blast-resistance gene Pb1 encodes an atypical CC-NBS-LRR protein and was generated by acquiring a promoter through local genome duplication
596	Pik1	Os11g0687800	10.1111/j.1469-8137.2010.03462.x	The isolation and characterization of Pik, a rice blast resistance gene which emerged after rice domestication
597	Pik2	Os11g0687900	10.1111/j.1469-8137.2010.03462.x	The isolation and characterization of Pik, a rice blast resistance gene which emerged after rice domestication
599	Pik-p	Os11g0689100	10.1007/s00122-010-1506-3	The Pik-p resistance to Magnaporthe oryzae in rice is mediated by a pair of closely linked CC-NBS-LRR genes
600	Xa3	Os11g0692300	10.1007/s00122-006-0388-x	Annotated
601	Xa26	Os11g0692300	10.1046/j.1365-313X.2003.01976.x	Xa26, a gene conferring resistance to Xanthomonas oryzae pv. oryzae in rice, encodes an LRR receptor kinase-like protein
602	Pi-ta	Os12g0281300	10.1105/tpc.12.11.2033	A Single Amino Acid Difference Distinguishes Resistant and Susceptible Alleles of the Rice Blast Resistance Gene Pi-ta
606	OsCOIN	Os01g0104100	10.1007/s00425-007-0548-5		Finished
607	OsIRL	Os01g0106400	10.1111/j.1399-3054.2009.01290.x		Finished
609	OsDREB2A	Os01g0165000	10.1007/s10529-011-0620-x		Finished
610	OsIAA1	Os01g0178500	10.1007/s11103-009-9474-1		Annotated
611	OsCDR1	Os01g0178600	10.1094/MPMI-22-12-1635		Finished
613	NH1	Os01g0194300	10.1094/MPMI-18-0511		Annotated
614	OsRAA1	Os01g0257300	10.1104/pp.104.041996		Annotated
615	CYP734A6	Os01g0388000	10.1111/j.1365-313X.2011.04567.x		Finished
616	OsWRKY11	Os01g0626400	10.1007/s00299-008-0614-x		Annotated
617-1	SLRL1	Os01g0646300	10.1111/j.1365-313X.2005.02562.x		Finished
617-2	SLRL2	Os05g0574900	10.1111/j.1365-313X.2005.02562.x		Finished
618	RACK1A	Os01g0686800	10.1105/tpc.107.054395		Annotated
619	OsWRKY13	Os01g0750100	10.1094/MPMI-20-5-0492		Finished
620	OsKAT1	Os01g0756700	10.1104/pp.107.101154		Annotated
621	OsCIPK12	Os01g0759400	10.1104/pp.107.101295		Annotated
623	GH3-2	Os01g0764800	10.1104/pp.110.163774		Annotated
624	OsGH3.1	Os01g0785400	10.1094/MPMI-22-2-0201		Finished
626	AP37	Os01g0797600	10.1104/pp.109.137554		Finished
627	ZFP179	Os01g0839100	10.1093/jxb/erq120		Annotated
628	OsMYB3R-2	Os01g0841500	10.1104/pp.108.133454		Finished
630	SAPK4	Os01g0869900	10.1186/1471-2229-8-49		Finished
631	SNAC2	Os01g0884300	10.1007/s11103-008-9309-5		Finished
633	OsDREB1F	Os01g0968800	10.1007/s11103-008-9340-6		Annotated
635	BiP	Os02g0115900	10.1093/pcp/pcp098		Finished
636	BiP3	Os02g0115900	10.1371/journal.pone.0009262		Finished
637	OsRacB	Os02g0120800	10.1016/j.plaphy.2005.12.001		Finished
638	OsCYP2	Os02g0121300	10.1186/1471-2229-11-34		Finished
639	OsMAPK33	Os02g0148100	10.1007/s12038-011-9002-8		Annotated
641	OsWRKY71	Os02g0181300	10.1016/j.jplph.2006.07.006		Finished
642	OsAGAP	Os02g0198300	10.1111/j.1365-313X.2006.02898.x		Annotated
645	RCN2	Os02g0531600	10.1046/j.1365-313X.2002.01255.x		Annotated
647	OsTPP1	Os02g0661100	10.1007/s00425-008-0729-x		Annotated
648	MAIF1	Os02g0671100	10.1093/mp/ssq066		Finished
649	SBPase	Os02g0698000	10.1007/s00299-006-0299-y		Finished
650	OsFAD2	Os02g0716500	10.1007/s11032-011-9587-5		Finished
651	OsHAP3E	Os02g0725700	10.1016/j.plantsci.2011.04.009		Finished
652	OsSKIPa	Os02g0759800	10.1073/pnas.0901940106		Finished
653	Orysa;KRP1	Os02g0762400	10.1104/pp.106.087056		Finished
654	mtHsp70	Os02g0774300	10.1016/j.febslet.2010.11.051		Finished
657	RWC3	Os02g0823100	10.1093/pcp/pch058		Finished
658	CDPK13	Os03g0128700	10.1007/s00438-007-0220-6		Annotated
659	OsCDPK13	Os03g0128700	10.1007/s11103-004-1178-y		Annotated
661	OsTIFY11a	Os03g0180800	10.1007/s11103-009-9524-8		Annotated
662	GS1;2	Os03g0223400	10.1007/s00299-008-0665-z		Annotated
666	sHSP17.7	Os03g0267200	10.1007/s00299-007-0470-0		Annotated
667	OsSDIR1	Os03g0272300	10.1007/s11103-011-9775-z		Annotated
668	OsAPXa	Os03g0285700	10.1007/s00299-010-0985-7		Finished
669	OsCIPK03	Os03g0319400	10.1104/pp.107.101295		Annotated
671	OsIPT2	Os03g0356900	10.1104/pp.106.085811		Annotated
674	OSH1	Os03g0727000	10.1105/tpc.5.9.1039		Finished
675	OsbHLH148	Os03g0741100	10.1111/j.1365-313X.2010.04477.x		Annotated
676	OSH43	Os03g0771500	10.1006/dbio.2000.9624		Finished
677	OsIPT4	Os03g0810100	10.1104/pp.106.085811		Finished
678	SNAC1	Os03g0815100	10.1073/pnas.0604882103		Annotated
680	ZFP182	Os03g0820300	10.1016/j.bbaexp.2007.02.006		Annotated
685	OsOxi1	Os04g0488700	10.1093/pcp/pcq132		Annotated
686	OsRDCP1	Os04g0530500	10.1016/j.plantsci.2011.02.008		Annotated
687	OsDREB1E	Os04g0572400	10.1007/s10529-008-9811-5		Finished
688	OsCDPK7	Os04g0584600	10.1046/j.1365-313x.2000.00787.x		Annotated
689	OsAP2-39	Os04g0610400	10.1371/journal.pone.0025216		Finished
690	ostgap1	Os04g0637000	10.1074/jbc.M109.036871		Finished
691	GS2	Os04g0659100	10.1023/A:1006408712416		Finished
692	OsRR6	Os04g0673300	10.1093/pcp/pcm022		Finished
694	OSH71	Os05g0129700	10.1006/dbio.2000.9624		Finished
695	OsLti6b	Os05g0138300	10.1007/s00299-006-0297-0		Annotated
696	OsPYL/RCAR5	Os05g0213500	10.1093/jxb/err338		Annotated
698	OsWRKY53	Os05g0343400	10.1016/j.bbaexp.2007.04.006		Finished
699	OsDREB2B	Os05g0346200	10.1007/s10529-008-9811-5		Finished
700	DEPG1	Os05g0365300	10.1007/s11033-011-1122-6	Over-expression in the nucleotide-binding site-leucine rich repeat gene DEPG1 increases susceptibility to bacterial leaf streak disease in transgenic rice plants	Susceptibility to Biotic Stress
701	Gns1	Os05g0375400	10.1023/A:1020714426540	Characterization of transgenic rice plants over-expressing the stress-inducible beta-glucanase gene Gns1
702	OsISA2	Os05g0393700	10.1104/pp.111.173435	Functional diversity of isoamylase oligomers: the ISA1 homo-oligomer is essential for amylopectin biosynthesis in rice endosperm
703	OsTPS1	Os05g0518600	10.1007/s00425-011-1458-0	Overexpression of the trehalose-6-phosphate synthase gene OsTPS1 enhances abiotic stress tolerance in rice	Abiotic stress
704	OsLEA3-1	Os05g0542500	10.1007/s00122-007-0538-9		Annotated
705-1	OsIPT7	Os05g0551700	10.1104/pp.106.085811		Finished
705-2	OsIPT5	Os07g0211700	10.1104/pp.106.085811		Finished
705-3	OsIPT4	Os03g0810100	10.1104/pp.106.085811		Finished
705-4	OsIPT2	Os03g0356900	10.1104/pp.106.085811		Finished
705-5	OsIPT8	Os01g0688300	10.1104/pp.106.085811		Finished
705-6	OsIPT10	Os06g0729800	10.1104/pp.106.085811		Finished
706	OsRAN2	Os05g0574500	10.1111/j.1365-3040.2010.02225.x		Annotated
707	OsHDT1	Os05g0597100	10.1371/journal.pone.0021789		Annotated
708	OsDREB1C	Os06g0127100	10.1093/pcp/pci230		Annotated
709	OsENOD93-1	Os06g0142350	10.1111/j.1365-3040.2009.02032.x		Annotated
710	OsPTF1	Os06g0193400	10.1104/pp.105.063115		Annotated
711	bu1	Os06g0226500	10.1104/pp.109.140806		Finished
712	HOX1a	Os06g0229300	10.1111/j.1744-7909.2011.01075.x		Finished
713	OsGLK1	Os06g0348800	10.1093/pcp/pcp138		Annotated
714-1	OsHDAC1	Os06g0583400	10.1046/j.1365-313X.2003.01650.x		Finished
714-2	OsHDAC2	Os02g0215200	10.1046/j.1365-313X.2003.01650.x		Finished
714-3	OsHDAC3	Os02g0214900	10.1046/j.1365-313X.2003.01650.x		Finished
715	CYP734A4	Os06g0600400	10.1111/j.1365-313X.2011.04567.x		Finished
716	OsSPX1	Os06g0603600	10.1111/j.1365-313X.2008.03734.x		Finished
717	OsiSAP8	Os06g0612800	10.1007/s11103-007-9284-2		Finished
718	OVP1	Os06g0644200	10.1016/j.plaphy.2010.09.014		Finished
721	YK1	Os06g0651100	10.1023/A:1019275218830		Finished
722	OsPIN2	Os06g0660200	10.1111/j.1467-7652.2011.00637.x		Finished
723-1	OSH1	Os03g0727000	10.1006/dbio.2000.9624		Finished
723-2	OSH15	Os07g0129700	10.1006/dbio.2000.9624		Finished
723-3	OSH43	Os03g0771500	10.1006/dbio.2000.9624		Finished
723-4	OSH6	Os01g0302500	10.1006/dbio.2000.9624		Finished
723-5	OSH71	Os05g0129700	10.1006/dbio.2000.9624		Finished
725	OsNek3	Os07g0176600	10.1093/pcp/pcp026		Finished
726	OsNRAMP1	Os07g0258400	10.1093/jxb/err136		Finished
727	OsPHR2	Os07g0438800	10.1104/pp.107.111443		Finished
728	CrtintP1	Os07g0498800	10.1007/s00438-007-0220-6		Finished
729	GH3-8	Os07g0592600	10.1105/tpc.107.055657		Finished
730	OsMADS18	Os07g0605200	10.1104/pp.104.045039		Finished
731	OsNHX1	Os07g0666900	10.1093/pcp/pch014		Finished
733	OsGAPC3	Os08g0126300	10.1007/s11240-011-9950-6		Finished
735	OsDOG	Os08g0504700	10.1016/j.jplph.2010.12.013		Finished
737	OsCPK21	Os08g0540400	10.1007/s11103-010-9717-1		Finished
740	OsCO3	Os09g0240200	10.1007/s00425-008-0742-0		Finished
741	OsWRKY76	Os09g0417600	10.1007/s12284-010-9039-6		Finished
743	OsbZIP72	Os09g0456200	10.1007/s00425-008-0857-3		Finished
744	OsEATB	Os09g0457900	10.1104/pp.111.179945		Finished
745	Oshox4	Os09g0470500	10.1007/s11103-007-9270-8		Finished
746	OsTFX1	Os09g0474000	10.1073/pnas.0701742104		Finished
747	RF2a	Os09g0516200	10.1073/pnas.0810303105		Finished
748	OsDREB1B	Os09g0522000	10.1093/pcp/pci230		Finished
749	OsDREB1A	Os09g0522200	10.1093/pcp/pci230		Finished
750	OsPIP2;7	Os09g0541000	10.1093/pcp/pcn166		Finished
751	SAUR39	Os09g0545300	10.1104/pp.109.143875		Finished
753-1	OsSPX1	Os06g0603600	10.1111/j.1744-7909.2009.00834.x		Annotated
753-2	OsSPX2	Os02g0202200	10.1111/j.1744-7909.2009.00834.x		Annotated
753	OsSPX3	Os10g0392600	10.1111/j.1744-7909.2009.00834.x		Annotated
753	OsSPX4	Os03g0827500	10.1111/j.1744-7909.2009.00834.x		Annotated
753	OsSPX5	Os03g0406100	10.1111/j.1744-7909.2009.00834.x		Annotated
753	OsSPX6	Os07g0614700	10.1111/j.1744-7909.2009.00834.x		Annotated
754	OsiICK6	Os10g0471700	10.1093/aob/mcr057		Finished
755	OsMADS56	Os10g0536100	10.1111/j.1365-3040.2009.02008.x		Finished
756	MYBS3	Os10g0561400	10.1104/pp.110.153015		Annotated
757	OsMSRA4.1	Os10g0563600	10.1007/s00425-009-0934-2		Annotated
758	Rir1b	Os10g0569400	10.1023/A:1006423232753		Finished
759	WOX3	Os11g0102100	10.1104/pp.107.095737		Annotated
760	OsCIPK15	Os11g0113700	10.1104/pp.107.101295		Finished
761	OsNAC10	Os11g0126900	10.1104/pp.110.154773		Finished
762	ONAC045	Os11g0127600	10.1016/j.bbrc.2008.12.163		Finished
763	RCN1	Os11g0152500	10.1046/j.1365-313X.2002.01255.x		Annotated
764	OsAsr1	Os11g0167800	10.1007/s10059-009-0055-6		Annotated
765-1	OsPR4a	Os11g0592200	10.1016/j.jplph.2011.07.013		Finished
765-2	OsPR4b	Os11g0592100	10.1016/j.jplph.2011.07.013		Finished
765-3	OsPR4c	Os11g0592000	10.1016/j.jplph.2011.07.013		Finished
765-4	OsPR4d	Os11g0591800	10.1016/j.jplph.2011.07.013		Finished
765-5	OsPR4e	Os11g0592200	10.1016/j.jplph.2011.07.013		Finished
766	OsMT1a	Os11g0704500	10.1007/s11103-009-9466-1		Finished
767	OsWAK1	Os11g0690066	10.1007/s11103-008-9430-5		Annotated
768	ZFP252	Os12g0583700	10.1016/j.febslet.2008.02.052		Finished
769	OsPID	Os12g0614600	10.1093/pcp/pcm024		Finished
771	OsTLP27	Os01g0102300	10.1016/j.plantsci.2012.06.006		Finished
772	OsHsp17.0	Os01g0136200	10.1016/j.jplph.2011.12.014		Finished
775	OsMKK6	Os01g0510100	10.1016/j.jplph.2011.11.012		Finished
776	OsRDR6	Os01g0527600	10.1111/j.1365-313X.2012.05001.x		Finished
777	RAD51C	Os01g0578000	10.1093/jxb/ers190		Finished
779	CFO1	Os01g0726400	10.1104/pp.112.200980		Finished
780	OsPAP10a	Os01g0776600	10.1111/j.1744-7909.2012.01143.x		Finished
782	OsCOI1	Os01g0853400	10.1371/journal.pone.0036214		Finished
783	OsMGT1	Os01g0869200	10.1104/pp.112.199778		Finished
784	PsbS	Os01g0869800	10.1111/j.1365-313X.2012.04995.x		Finished
785	OsHPL3	Os02g0110200	10.1111/j.1365-313X.2012.05027.x		Finished
786	MADS29	Os02g0170300	10.1105/tpc.111.094854		Finished
787	MTR1	Os02g0491300	10.1016/j.devcel.2012.04.011		Finished
788	cry1a	Os02g0573200	10.1093/pcp/pcs097		Finished
788-2	cry1b	Os04g0452100	10.1093/pcp/pcs097		Finished
789	OsABC1-2	Os02g0575500	10.1016/j.gene.2012.02.017		Finished
791	OsHk6	Os02g0738400	10.1093/pcp/pcs079		Finished
1227	OsHk3	Os01g0923700	10.1093/pcp/pcs079		Finished
1228	OsHk4	Os03g0717700	10.1093/pcp/pcs079		Finished
792	D50	Os02g0477700	10.1111/j.1365-3040.2012.02534.x		Finished
793	th1	Os02g0811000	10.1007/s11103-011-9868-8	Annotated
794	osdrm2	Os03g0110800	10.1111/j.1365-313X.2012.04974.x	Targeted disruption of an orthologue of DOMAINS REARRANGED METHYLASE 2, OsDRM2, impairs the growth of rice plants by abnormal DNA methylation
795	te	Os03g0123300	10.1038/ncomms1716		Finished
796	OsMYB2	Os03g0315400	10.1093/jxb/err431	The rice Os03g0315400 was reported as OsMYB2 in 2012 [1] by researchers from China.
797	OsCam1-1	Os03g0319300	10.1007/s12374-011-0154-8	The rice Os03g0319300 was reported as OsCam1-1 in 2012 [1] by researchers from Thailand.
798	OsLEA3-2	Os03g0322900	10.1371/journal.pone.0045117	OsLEA3-2, an Abiotic Stress Induced Gene of Rice Plays a Key Role in Salt and Drought Tolerance
800	ysa	Os03g0597200	10.1104/pp.112.195081		Disruption of a Rice Pentatricopeptide Repeat Protein Causes a Seedling-Specific Albino Phenotype and Its Utilization to Enhance Seed Purity in Hybrid Rice Production
801	OsSh1	Os03g0650000	10.1038/ng.2281	Parallel domestication of the Shattering1 genes in cereals
802	OsSWAP70A	Os03g0666200	10.1111/j.1365-313X.2011.04874.x	Annotated
803	OsDDM1b	Os03g0722400	10.1007/s00438-012-0717-5	DDM1 (Decrease in DNA Methylation) genes in rice (Oryza sativa)
804	OsDDM1a	Os09g0442700	10.1007/s00438-012-0717-5	DDM1 (Decrease in DNA Methylation) genes in rice (Oryza sativa)
806	OsPIL1	Os03g0782500	10.1073/pnas.1207324109	Annotated
807	gh1	Os03g0819600	10.1007/s00425-012-1598-x	A mutation in the rice chalcone isomerase gene causes the golden hull and internode 1 phenotype
808	OsPT1	Os03g0150600	10.1104/pp.112.196345	A Constitutive Expressed Phosphate Transporter, OsPht1;1, Modulates Phosphate Uptake and Translocation in Phosphate-Replete Rice
810	OsVIT1	Os04g0463400	10.1111/j.1365-313X.2012.05088.x	Annotated
811	YSL16	Os04g0542800	10.1105/tpc.112.103820	Annotated
812	cZOGT1	Os04g0556500	10.1104/pp.112.196733	Cytokinin Activity of cis-Zeatin and Phenotypic Alterations Induced by Overexpression of Putative cis-Zeatin-O-glucosyltransferase in Rice
813	cZOGT2	Os04g0556600	10.1104/pp.112.196733	Cytokinin Activity of cis-Zeatin and Phenotypic Alterations Induced by Overexpression of Putative cis-Zeatin-O-glucosyltransferase in Rice
1026	cZOGT3	Os04g0565400	10.1104/pp.112.196733	Cytokinin Activity of cis-Zeatin and Phenotypic Alterations Induced by Overexpression of Putative cis-Zeatin-O-glucosyltransferase in Rice
814	xiao	Os04g0576900	10.1111/j.1365-313X.2011.04877.x	XIAO is involved in the control of organ size by contributing to the regulation of signaling and homeostasis of brassino steroids and cell cycling in rice
815	MPR25	Os04g0602600	10.1111/j.1365-313X.2012.05091.x	Annotated
816	shat1	Os04g0649100	10.1105/tpc.111.094383	Genetic Control of Seed Shattering in Rice by the APETALA2 Transcription Factor SHATTERING ABORTION1
817	SLAC1	Os04g0674700	10.1093/jxb/ers216	Increased leaf photosynthesis caused by elevated stomatal conductance in a rice mutant deficient in SLAC1, a guard cell anion channel protein
819	OsMYB2P-1 1	Os05g0140100	10.1104/pp.112.194217	OsMYB2P-1, an R2R3 MYB Transcription Factor, Is Involved in the Regulation of Phosphate-Starvation Responses and Root Architecture in Rice
820	OsSYP71	Os05g0553700	10.1016/j.gene.2012.05.011	Overexpression of the Qc-SNARE gene OsSYP71 enhances tolerance to oxidative stress and resistance to rice blast in rice
821	HDT701	Os05g0597100	10.1105/tpc.112.101972	HDT701, a Histone H4 Deacetylase, Negatively Regulates Plant Innate Immunity by Modulating Histone H4 Acetylation of Defense-Related Genes in Rice
822	OsELF3-1	Os06g0142600	10.1371/journal.pone.0043705	Annotated
823	Hd17	Os06g0142600	10.1093/pcp/pcs028	Natural Variation in Hd17, a Homolog of Arabidopsis ELF3 That is Involved in Rice Photoperiodic Flowering
825	LYP6	Os06g0208800	10.1105/tpc.112.102475	Annotated
826	OsbZIP46	Os06g0211200	10.1104/pp.111.190389	Constitutive Activation of Transcription Factor OsbZIP46 Improves Drought Tolerance in Rice
830	RPL1	Os06g0245600	10.1093/mp/ssr091	RPL1, a Gene Involved in Epigenetic Processes Regulates Phenotypic Plasticity in Rice
831	OsHSBP2	Os06g0274000	10.1093/jxb/ers245	Functional analysis of OsHSBP1 and OsHSBP2 revealed
1027	OsHSBP1	Os09g0375100	10.1093/jxb/ers245	Functional analysis of OsHSBP1 and OsHSBP2 revealed
832	OsMIOX	Os06g0561000	10.1016/j.plantsci.2012.08.003	Annotated
833	SE5	Os06g0603000	10.1007/s11103-012-9945-7	Annotated
834	OsCOM1	Os06g0613400	10.1111/j.1365-313X.2012.05025.x	The role of OsCOM1 in homologous chromosome synapsis and recombination in rice meiosis
835	OsbZIP52/RISBZ5	Os06g0662200	10.1007/s00425-011-1564-z	Annotated
836	SRL1	Os07g0102300	10.1104/pp.112.199968	Annotated
837	MADS15	Os07g0108900	10.1105/tpc.112.097105	Annotated
840	OsSWAP70B	Os07g0138100	10.1111/j.1365-313X.2011.04874.x	SWAP70 functions as a Rac/Rop guanine nucleotide-exchange factor in rice
841	spl5	Os07g0203700	10.1007/s11032-011-9677-4	SPL5, a cell death and defense-related gene, encodes a putative splicing factor 3b subunit 3 (SF3b3) in rice
842	Nramp5	Os07g0257200	10.1105/tpc.112.096925	Annotated
843	OsCHR4	Os07g0497000	10.1007/s00425-012-1667-1	Molecular cloning and characterization of OsCHR4, a rice chromatin-remodeling factor required for early chloroplast development in adaxial mesophyll
844	chr729	Os07g0497100	10.1073/pnas.1203148109	CHD3 protein recognizes and regulates methylated histone H3 lysines 4 and 27 over a subset of targets in the rice genome
845	OSRIP18	Os07g0556800	10.1007/s11248-011-9568-9	Annotated
846	ObgC	Os07g0669200	10.1111/j.1365-313X.2012.04976.x	Functional characterization of ObgC in ribosome biogenesis during chloroplast development
847	cslf6	Os08g0160500	10.1104/pp.112.195495	Loss of Cellulose Synthase-Like F6 Function Affects Mixed-Linkage Glucan Deposition, Cell Wall Mechanical Properties, and Defense Responses in Vegetative Tissues of Rice
848	OsLIS-L1	Os08g0162100	10.1007/s00425-011-1532-7	Annotated
851	WRKY30	Os08g0499300	10.1007/s00425-012-1668-0	Annotated
852	Orysa;CDKB2;1	Os08g0512600	10.1111/j.1365-313X.2011.04847.x	CDKB2 is involved in mitosis and DNA damage response in rice
853	qGW8	Os08g0531600	10.1038/ng.2327	Annotated
854	SDG724	Os09g0307800	10.1105/tpc.112.101436	Annotated
856	OsVIT2	Os09g0396900	10.1111/j.1365-313X.2012.05088.x	Annotated
857	OsDDM1a	Os09g0442700	10.1007/s00438-012-0717-5	Annotated
858	LYP4	Os09g0452200	10.1105/tpc.112.102475	Annotated
859	BC15/OsCTL1	Os09g0494200	10.1104/pp.112.195529	Annotated
860	LGD1	Os09g0502100	10.1111/j.1365-313X.2012.04989.x	Annotated
861	BSR1	Os09g0533600	10.1111/j.1467-7652.2010.00568.x	Screening for resistance against Pseudomonas syringae in rice-FOX Arabidopsis lines identified a putative receptor-like cytoplasmic kinase gene that confers resistance to major bacterial and fungal pathogens in Arabidopsis and rice.	Resistance
862	OsLDC-like 1	Os09g0547500	10.1007/s10059-012-0067-5	Increased Polyamine Biosynthesis Enhances Stress Tolerance by Preventing the Accumulation of Reactive Oxygen Species: T-DNA Mutational Analysis of Oryza sativa Lysine Decarboxylase-like Protein 1
863	OsDEES1	Os09g0561600	10.1104/pp.112.203943	Annotated
864	OsFbx352	Os10g0127900	10.1093/jxb/ers206	Annotated
865	rl14	Os10g0558900	10.1111/j.1467-7652.2012.00679.x	Annotated
866	ospk1	Os11g0148500	10.1007/s11105-011-0386-2	Downregulation of OsPK1 Contributes to Oxidative Stress and the Variations in ABA/GA Balance in Rice
867	MIL2	Os12g0152500	10.1111/j.1469-8137.2012.04270.x	MIL2 (MICROSPORELESS2) regulates early cell differentiation in the rice anther
868	PSTOL1	BAK26566	10.1038/nature11346
869	p/tms12-1	smRNA615912	10.1038/cr.2012.28
870	OsHsp23.7	Os12g0569700	10.1016/j.jplph.2011.12.014	Annotated
871	Amy1A	Os02g0765600	10.1111/j.1467-7652.2012.00741.x	Annotated	Suppression of a-amylase genes improves quality of rice grain ripened under high temperature
872	Amy2A	Os06g0713800	10.1111/j.1467-7652.2012.00741.x	Suppression of a-amylase genes improves quality of rice grain ripened under high temperature
873	Amy3A	Os09g0457400	10.1111/j.1467-7652.2012.00741.x	Suppression of a-amylase genes improves quality of rice grain ripened under high temperature
874	Amy3B	Os09g0457600	10.1111/j.1467-7652.2012.00741.x	Suppression of a-amylase genes improves quality of rice grain ripened under high temperature
1236	Amy3C	Os09g0457800	10.1111/j.1467-7652.2012.00741.x	Suppression of a-amylase genes improves quality of rice grain ripened under high temperature
1237	Amy3D	Os08g0473900	10.1111/j.1467-7652.2012.00741.x	Suppression of a-amylase genes improves quality of rice grain ripened under high temperature
1238	Amy3E	Os08g0473600	10.1111/j.1467-7652.2012.00741.x	Suppression of a-amylase genes improves quality of rice grain ripened under high temperature
875	ylc1	Os09g0380200	10.1007/s00425-012-1756-1	Young Leaf Chlorosis 1, a chloroplast-localized gene required for chlorophyll and lu
878	OsIAGLU	Os03g0693600	10.1007/s12374-012-0238-0	Tiller Formation in Rice is Altered by Overexpression of OsIAGLU Gene Encoding an IAA-conjugating Enzyme or Exogenous Treatment of Free IAA
879	OsOAT	Os03g0643300	10.1016/j.plantsci.2012.09.002	Annotated
1230	OsAPS1	Os09g0298200	10.1071/FP12186	Gene Expression of ADP-glucose Pyrophosphorylase and Starch Contents in Rice Cultured Cells are Cooperatively Regulated by Sucrose and ABA
1231	OsAPS2	Os08g0345800	10.1071/FP12186	Gene Expression of ADP-glucose Pyrophosphorylase and Starch Contents in Rice Cultured Cells are Cooperatively Regulated by Sucrose and ABA
1232	OsAGPL1	Os03g0735000	10.1071/FP12186	Gene Expression of ADP-glucose Pyrophosphorylase and Starch Contents in Rice Cultured Cells are Cooperatively Regulated by Sucrose and ABA
1234	OsAPL3	Os05g0580000	10.1071/FP12186	Gene Expression of ADP-glucose Pyrophosphorylase and Starch Contents in Rice Cultured Cells are Cooperatively Regulated by Sucrose and ABA
1235	OsAPL4	Os07g0243200	10.1071/FP12186	Gene Expression of ADP-glucose Pyrophosphorylase and Starch Contents in Rice Cultured Cells are Cooperatively Regulated by Sucrose and ABA
881	OsGH3-2	Os01g0764800	10.1093/jxb/ers300	Annotated
882	OsDMI3	Os05g0489900	10.1093/mp/sss068		Annotated
883	Psi?LDMAR	Os12g0545900	10.1093/mp/sss095	Annotated
884	OsJAZ8	Os09g0439200	10.1093/pcp/pcs145	Annotated
885	Osj10gBTF3	Os10g0483000	10.1093/pcp/pcs146	Inhibition of a Basal Transcription Factor 3-Like Gene Osj10gBTF3 in Rice Results in Significant Plant Miniaturization and Typical Pollen Abortion
886	LPA1	Os03g0237250	10.1104/pp.112.208496	Annotated
887	PT11	Os01g0657100	10.1105/tpc.112.104901	Nonredundant Regulation of Rice Arbuscular Mycorrhizal Symbiosis by Two Members of the PHOSPHATE TRANSPORTER1 Gene Family
888	PT13	Os04g0186800	10.1105/tpc.112.104901	Nonredundant Regulation of Rice Arbuscular Mycorrhizal Symbiosis by Two Members of the PHOSPHATE TRANSPORTER1 Gene Family
889	OsMYB55	Os05g0553400	10.1371/journal.pone.0052030	Annotated
890	DDF1	Os06g0138700	10.1111/j.1365-313X.2012.05126.x	Dwarf and deformed flower 1, encoding an F‐box protein, is critical for vegetative and floral development in rice (Oryza sativa L.)
891	OsPIN3t	Os01g0643300	10.1111/j.1365-313X.2012.05121.x	Annotated
892	OsbHLH133	Os12g0508500	10.1111/j.1365-3040.2012.02569.x	Identification of OsbHLH133 as a regulator of iron distribution between roots and shoots in Oryza sativa
893	PGR5	Os08g0566600	10.1093/pcp/pcs153	PGR5-Dependent Cyclic Electron Transport Around PSI Contributes to the Redox Homeostasis in Chloroplasts Rather Than CO2 Fixation and Biomass Production in Rice
894	OsNRT2.3a	Os01g0704100	10.1104/pp.112.204461	Annotated
895	bls1	Os02g0811000	10.1007/s11105-012-0480-0	BEAK LIKE SPIKELET1 is Required for Lateral Development of Lemma and Palea in Ri
896	UIP1	Os02g0818000	10.1007/s11816-012-0239-y	Transgenic overexpression of UIP1, an interactor of the 3 0 untranslated region of the Rubisco small subunit mRNA, increases rice tolerance to drought
897	OrbHLH001	Os01g0928000	10.1016/j.jplph.2012.08.019	Annotated
898	CSA	Os01g0274800	10.1073/pnas.1213041110	Annotated
899	qGL3	Os03g0646900	10.1073/pnas.1219776110	Annotated
900	OsPPKL2	Os05g0144400	10.1073/pnas.1219776110	Rare allele of OsPPKL1 associated with grain length causes extra-large grain and a significant yield increase in rice
901	OsPPKL3	Os12g0617900	10.1073/pnas.1219776110	Rare allele of OsPPKL1 associated with grain length causes extra-large grain and a significant yield increase in rice
902	OsSRO1c	Os03g0230300	10.1093/jxb/ers349	Annotated
903	OsGT1	Os01g0262600	10.1104/pp.112.210948	Annotated
904	FIE1	Os08g0137250	10.1105/tpc.112.102269	Annotated
905	APIP6	Os05g0154600	10.1105/tpc.112.105429	The Magnaporthe oryzae Effector AvrPiz-t Targets the RING E3 Ubiquitin Ligase APIP6 to Suppress Pathogen Associated Molecular Pattern–Triggered Immunity in Rice
906	BRK1	Os07g0508500	10.1105/tpc.112.105874	BRK1, a Bub1-Related Kinase, Is Essential for Generating Proper Tension between Homologous Kinetochores at Metaphase I of Rice Meiosis
907	OsARG	Os04g0106300	10.1111/j.1365-313x.2012.05122.x	Annotated
908	DEC	Os12g0465700	10.1111/j.1365-313x.2012.05123.x	Rice DECUSSATE controls phyllotaxy by affecting the cytokinin signaling pathway
909	OsIDD10	Os04g0566400	10.1111/nph.12075	Regulatory role of indeterminate domain 10 (IDD10) in ammonium-dependent gene expression in rice roots
910	OsARF16	Os06g0196700	10.1111/pce.12001	Annotated
911	OsMADS29	Os02g0170300	10.1371/journal.pone.0051435		Annotated
912	OsPDCD5	Os05g0547850	10.1007/s11032-012-9793-9		Annotated
913	OsCDPK1	Os03g0128700	10.1007/s11103-012-0006-z		Annotated
914	PDA1	Os06g0607700	10.1007/s12374-013-0902-z		Annotated
915	JMJ703	Os05g0196500	10.1073/pnas.1217020110		Annotated
916	OsVIL2	Os02g0152500	10.1111/tpj.12057	OsVIL2 functions with PRC2 to induce flowering by repressing OsLFL1 in rice
917	AIP1	Os01g0125800	10.1111/tpj.12065	Oryza sativa actin-interacting protein 1 is required for rice growth by promoting actin turnover
918	Xb25	Os09g0513000	10.1111/tpj.12076	The XA21 binding protein XB25 is required for maintaining XA21-mediated disease resistance
919	DTH2	Os02g0724000	10.1073/pnas.1213962110		Annotated
920	reg1	Os03g0786400	10.1073/pnas.1300359110		Annotated
924	fgl	Os10g0496900	10.1111/tpj.12110		Annotated
925	Ehd4	Os03g0112700	10.1371/journal.pgen.1003281		Annotated
926	GnTI	Os02g0833000	10.1111/tpj.12087	N-glycan maturation is crucial for cytokinin-mediated development and cellulose synthesis in Oryza sativa
927	OsFH1	Os01g0897700	10.1007-s00425-013-1838-8		Annotated
928	moc2	Os01g0866400	10.5511/plantbiotechnology.12.1210a	Rice monoculm mutation moc2, which inhibits outgrowth of the second tillers, is ascribed to lack of a fructose-1,6-bisphosphatase
929	OsHsfA7	Os01g0571300	10.5483/BMBRep.2013.46.1.090		Annotated
930	OsPIANK1	Os11g0182500	10.1371/journal.pone.0059699	Functional Analysis and Expressional Characterization of Rice Ankyrin Repeat-Containing Protein, OsPIANK1, in Basal Defense against Magnaporthe oryzae Attack
931	OsFIE2	Os08g0137100	10.1371/journal.pgen.1003322		Annotated
933	OsORC3	Os10g0402200	10.1111/tpj.12126	OsORC3 is required for lateral root development in rice
934	OsAOC	Os03g0438100	10.1111/tpj.12115	Identification of rice Allene Oxide Cyclase mutants and the function of jasmonate for defence against Magnaporthe oryzae
935	OsSNDP1	Os10g0122600	10.1007-s11103-013-0033-4	OsSNDP1, a Sec14-nodulin domain-containing protein, plays a critical role in root hair elongation in rice
936	OsRP1L1	Os05g0365300	10.1007-s11105-012-0537-0		Annotated
937	OsVPS22	Os09g0529700	10.1007/s11033-012-2422-1	Knockout of the VPS22 component of the ESCRT-II complex in rice (Oryza sativa L.) causes chalky endosperm and early seedling lethality
938	OsTZF1	Os05g0195200	10.1104/pp.112.205385		Annotated
939	OsAt10	Os06g0594700	10.1104/pp.112.208694	Overexpression of a BAHD Acyltransferase, OsAt10, Alters Rice Cell Wall Hydroxycinnamic Acid Content and Saccharification
940	Cga1	Os02g0220400	10.1104/pp.113.217265		Annotated
941	nal2	Os11g0102100	10.1111/nph.12231	A WUSCHEL-LIKE HOMEOBOX Gene Represses a YABBY Gene Expression Required for Rice Leaf Development
942	nal3	Os12g0101600	10.1111/nph.12231		Annotated
943	OsPTR9	Os06g0706400	10.1111/pbi.12031		Annotated
944	OsDHAR1	Os05g0116100	10.1007/s00425-013-1862-8	Homologous expression of cytosolic dehydroascorbate reductase increases grain yield and biomass under paddy field conditions in transgenic rice
945	ASR1	Os11g0167800	10.1007/s10059-013-0036-7		Annotated
946	ASR3	Os02g0543000	10.1007/s10059-013-0036-7	Abiotic Stress Responsive Rice ASR1 and ASR3 Exhibit Different Tissue-Dependent Sugar and Hormone-Sensitivities
947	OsDIL1	Os10g0148000	10.1007/s11103-013-0057-9		Annotated
948	SLL1	Os04g0379900	10.1016/j.plantsci.2013.01.003	SLL1, which encodes a member of the stearoyl-acyl carrier protein fatty acid desaturase family, is involve
949	Oscyp71Z2	Os07g0217600	10.1016/j.plantsci.2013.02.005	Oscyp71Z2 involves diterpenoid phytoalexin biosynthesis that contributes to bacterial blight resistance in rice
950	OsGPX3	Os02g0664000	10.1016/j.plantsci.2013.03.017	The mitochondrial glutathione peroxidase GPX3 is essential for H 2 O 2 homeostasis and root and shoot development in rice
951	OsGS1;2	Os03g0223400	10.1093/pcp/pct046		Annotated
952	MSF1	Os05g0497200	10.1104/pp.113.216044	Annotated
953	CAP1	Os02g0141300	10.1104/pp.113.216523		Annotated
954	glup6	Os03g0262900	10.1104/pp.113.217869	Annotated
955	OsGDCH	Os10g0516100	10.1111/pce.12078	Knockdown of GDCH gene reveals reactive oxygen species-induced leaf senescence in rice
956	RGA4	Os11g0225100	10.1105/tpc.112.107201		Annotated
957	RGA5	Os11g0225300	10.1105/tpc.112.10720	The Rice Resistance Protein Pair RGA4/RGA5 Recognizes the Magnaporthe oryzae Effectors AVR-Pia and AVR1-CO39 by Direct Binding
958	LOX3	Os03g0700400	10.1007/s12374-013-0085-7	Molecular Genetic Characterization of Rice Seed Lipoxygenase 3 and Assessment of Its Effects on Seed Longevity
959	Sar1a	Os01g0338000	10.1093/jxb/ert128	Small GTPase Sar1 is crucial for proglutelin and α-globulin export from the endoplasmic reticulum in rice endosperm
960	Sar1b	Os12g0560300	10.1093/jxb/ert128	Small GTPase Sar1 is crucial for proglutelin and α-globulin export from the endoplasmic reticulum in rice endosperm
961	Sar1c	Os01g0254000	10.1093/jxb/ert128	Small GTPase Sar1 is crucial for proglutelin and α-globulin export from the endoplasmic reticulum in rice endosperm
961	Sar1d	Os06g0225000	10.1093/jxb/ert128	Small GTPase Sar1 is crucial for proglutelin and α-globulin export from the endoplasmic reticulum in rice endosperm
962	vyl	Os03g0411500	10.1104/pp.113.217604		Annotated
963	SERF1	Os05g0420300	10.1105/tpc.113.113068	SALT-RESPONSIVE ERF1 Regulates Reactive Oxygen Species–Dependent Signaling during the Initial Response to Salt Stress in Rice
964	dep	Os05g0118700	10.1186/1939-8433-5-28	A WUSCHEL-related homeobox 3B gene, depilous (dep), confers glabrousness of rice leaves and glumes
965	LC1	Os01g0785400	10.1093/mp/sss064
966	TUD1	Os03g0232600	10.1371/journal.pgen.1003391	Annotated
967	GL3.1	Os03g0646900	10.1038/cr.2012.151		Annotated
971	Oshox22	Os04g0541700	10.1007/s11103-012-9967-1	Annotated
972	OsLG1	Os04g0656500	10.1038/ng.2567	OsLG1 regulates a closed panicle trait in domesticated rice
973	OsMSH5	Os05g0498300	10.1093/mp/sss145	Annotated
974	ABCG15	Os06g0607700	10.1093/pcp/pcs162	Annotated
975	TGW6	Os06g0623700	10.1038/ng.2612	Loss of function of the IAA-glucose hydrolase gene TGW6 enhances rice grain weight and increases yield
976	OsFD2	Os06g0720900	10.1093/pcp/pct005	Functional Diversification of FD Transcription Factors in Rice, Components of Florigen Activation Complexes	Annotated
127	OsFD1	Os09g0540800	10.1038/nature10272	Functional Diversification of FD Transcription Factors in Rice, Components of Florigen Activation Complexes
977	OsDGL1	Os07g0209000	10.1093/pcp/pcs159	OsDGL1, a Homolog of an Oligosaccharyltransferase Complex Subunit, is Involved in N-Glycosylation and Root Development in Rice
978	Rurm1	Os07g0466300	10.1093/mp/sst042	Loss-of-Function of a Ubiquitin-Related Modifier Promotes the Mobilization of the Active MITE mPing
979	RSS3	Os11g0446000	10.1105/tpc.113.112052		Annotated
980	OsRecQl4	Os04g0433800	10.1093/pcp/pcs155	DNA replication arrest leads to enhanced homologous recombination and cell death in meristems of rice OsRecQl4 mutants
981	OsExo1	Os01g0777300	10.1093/pcp/pcs155	Rice exonuclease-1 homologue, OsEXO1, that interacts with DNA polymerase k and RPA subunit proteins, is involved in cell proliferation
982	OsIRX10	Os01g0926700	10.1093/mp/sss135	Inactivation of OsIRX10 Leads to Decreased Xylan Content in Rice Culm Cell Walls and Improved Biomass Saccharification
983	OsCpn60α1	Os12g0277500	10.1007/s10059-013-2337-2	OsCpn60α1, Encoding the Plastid Chaperonin 60α Subunit, Is Essential for Folding of rbcL
985	Dro1	Os09g0439800	10.1038/ng.2725	Annotated
986	OsSAG12-1	Os01g0907600	10.1007/s12038-013-9334-7	Down-regulation of OsSAG12-1 results in enhanced senescence and pathogen-induced cell death in transgenic rice plants
987	BGL11(t)	Os11g0592900	10.1007/s13258-013-0094-4	Identification and characterization of BGL11(t), a novel gene regulating leaf-color mutation in rice (Oryza sativa L.)
990	OsDET1	Os01g0104600	10.1016/j.plantsci.2013.06.003	Mutation of OsDET1 increases chlorophyll content in rice
991	OsVHA-A	Os06g0662000	10.1371/journal.pone.0069046	Annotated
992	TIFY11b	Os03g0181100	10.1271/bbb.120545	Overexpression of a Rice TIFY Gene Increases Grain Size through Enhanced Accumulation of Carbohydrates in the Stem
994	GE	Os07g0603700	10.1111/tpj.12223	GIANT EMBRYO encodes CYP78A13, required for proper size balance between embryo and endosperm in rice
999	OsAP65	Os07g0592200	10.1093/jxb/ert173	OsAP65, a rice aspartic protease, is essential for male fertility and plays a role in pollen germination and pollen tube growth
1000	OsbZIP58	Os07g0182000	10.1093/jxb/ert187	OsbZIP58, a basic leucine zipper transcription factor, regulates starch biosynthesis in rice endosperm
1001	YGL138(t)	Os11g0153600	10.1186/1939-8433-6-7	YGL138(t), encoding a putative signal recognition particle 54 kDa protein, is involved in chloroplast development of rice	Development
1003	OsGA20ox3	Os07g0169700	10.1094/MPMI-05-12-0138-R	Gibberellin 20-Oxidase Gene OsGA20ox3 Regulates Plant Stature and Disease Development in Rice	Stress
1004	Hd16	Os03g0793500	10.1111/tpj.12268		Annotated
1005	Bh4	Os04g0460200	10.1104/pp.110.168500	Genetic Control of a Transition from Black to Straw-White Seed Hull in Rice Domestication	Development
1006	OsSUV3	Os03g0746500	10.1111/tpj.12277		Annotated
1007	OsMPS	Os02g0618400	10.1111/tpj.12286		Annotated
1008	OsCDT3	Os01g0178300	10.1111/tpj.12296	A plasma membrane-localized small peptide is involved in rice aluminum tolerance	Stress
1009	CRC1	Os04g0479000	10.1105/tpc.113.113175	CENTRAL REGION COMPONENT1, a Novel Synaptonemal Complex Component, Is Essential for Meiotic Recombination Initiation in Rice	Development
1010	ASL1	Os01g0678600	10.1534/g3.113.007856	Disruption of the Rice Plastid Ribosomal Protein S20 Leads to Chloroplast Developmental Defects and Seedling Lethality	Development
1011	OsNAP	Os03g0327800	10.1186/1471-2229-13-132		Annotated
1012	GS6	Os06g0127800	10.1111/jipb.12062		Annotated
1013	OsHOS1	Os03g0737200	10.1007/s11103-013-0092-6	Isolation and characterization of rice (Oryza sativa L.) E3-ubiquitin ligase OsHOS1 gene in the modulation of cold stress response	Stress
1014	SGRL	Os04g0692600	10.1016/j.jplph.2013.05.016		The Stay-Green Rice like (SGRL) gene regulates chlorophyll degradation in rice
1017	An-1	Os04g0350700	10.1105/tpc.113.113589		Annotated
1018	OslecRK	Os04g0201900	10.1111/tpj.12328		A rice lectin receptor-like kinase that is involved in innateimmune responses also contributes to seed germination
1020	OsVOZ2	Os05g0515700	10.1371/journal.pone.0073346	Xanthomonas oryzae pv. oryzae Type III Effector XopN Targets OsVOZ2 and a Putative Thiamine Synthase as a Virulence Factor in Rice	Stress
1021	OsHsfB2b	Os08g0546800	10.1007/s00299-013-1492-4		Annotated
1022	OsGRX8	Os02g0512400	10.1007/s00425-013-1940-y	Modified expression of an auxin‐responsive rice CC‐type glutaredoxin gene affects multiple abiotic stress responses	stress
1023	DAO	Os04g0475600	10.1016/j.devcel.2013.09.005		Annotated
1024	OsHMA5	Os04g0556000	10.1104/pp.113.226225	A Member of the Heavy Metal P-Type ATPase OsHMA5 Is Involved in Xylem Loading of Copper in Rice	Stress
1025	Osoxo4	Os03g0693700	10.1111/mpp.12055		Rice oxalate oxidase gene driven by green tissue-specific promoter increases tolerance to sheath blight pathogen (Rhizoctonia solani) in transgenic rice
1026	OsSTN8	Os05g0480000	10.1111/tpj.12331		Loss-of-function of OsSTN8 suppresses the photosystem II core protein phosphorylation and interferes with the photosystem II repair mechanism in rice
1027	OsEXPA8	Os01g0248900	10.1371/journal.pone.0075997		Overexpression of OsEXPA8, a root-specific gene, improves rice growth and root system architecture by facilitating cell extension
1028	OsPRR37	Os07g0695100	10.1093/mp/sst088		Natural Variation in OsPRR37 Regulates Heading Date and Contributes to Rice Cultivation at a Wide Range of Latitudes
1029	OsMADS57	Os02g0731200	10.1038/ncomms2542		Annotated
1030	DWA1	Os04g0473900	10.1073/pnas.1316412110		Annotated
1031	gpa2	Os03g0262900	10.1093/mp/sst081		Annotated
1032	MHZ7/OsEIN2	Os07g0155600	10.1093/mp/sst087		Annotated
1033	YGL2	Os06g0603000	10.1007/s00299-013-1498-y		Annotated
1034	OsMTP8.1	Os03g0226400	10.1093/jxb/ert243	Mn tolerance in rice is mediated by MTP8.1, a member of the cation diffusion facilitator family
1035	this1	Os01g0751600	10.1093/jxb/ert256	THIS1 is a putative lipase that regulates tillering, plant height, and spikelet fertility in rice
1036	OsABCG15	Os06g0607700	10.1111/jipb.12053		The ATP‐binding Cassette Transporter OsABCG15 is Required for Anther Development and Pollen Fertility in Rice
1037	OsRRMh	Os09g0516300	10.1111/jipb.12056	OsRRMh, a Spen-like gene, plays an important role during the vegetative to reproductive transition in rice.
1038	OsCTR2	Os02g0527600	10.1093/jxb/ert272	Rice CONSTITUTIVE TRIPLE-RESPONSE2 is involved in the ethylene-receptor signalling and regulation of various aspects of rice growth and development
1039	OsbZIP71	Os09g0306400	10.1007/s11103-013-0115-3		Annotated
1040	OsHox33	Os12g0612700	10.1007/s11427-013-4565-2	Knockdown of OsHox33, a member of the class III homeodomain-leucine zipper gene family, accelerates leaf senescence in rice
1041	OsGAPDHB	Os03g0129300	10.1016/j.plantsci.2013.09.010	A proteomic study of rice cultivar TNG67 and its high aroma mutant SA0420.
1042	OsAPX7	Os04g0434800	10.1016/j.plantsci.2013.10.001	The knockdown of chloroplastic ascorbate peroxidases reveals its regulatory role in the photosynthesis and protection under photo-oxidative stress in rice
1043	OsAPX8	Os02g0553200	10.1016/j.plantsci.2013.10.001		Annotated
1044	OsRNS4	Os09g0537700	10.1016/j.plantsci.2013.10.003		Annotated
1045	D53	Os11g0104300	"10.1038/nature12870, 10.1038/nature12878"		Annotated
1046	OsHRZ1	Os01g0689451	10.1038/ncomms3792	Iron-binding haemerythrin RING ubiquitin ligases regulate plant iron responses and accumulation
1047	OsHRZ2	Os05g0551000	10.1038/ncomms3792	Iron-binding haemerythrin RING ubiquitin ligases regulate plant iron responses and accumulation
1048	PTB1	Os05g0145000	10.1038/ncomms3793	Natural variation in PTB1 regulates rice seed setting rate by controlling pollen tube growth
1050	OsBOR4	Os05g0176800	10.1093/pcp/pct136		Annotated
1051	LYL1	Os02g0744900	10.1371/journal.pone.0075299	Mutation of the Light-Induced Yellow Leaf 1 Gene, Which Encodes a Geranylgeranyl Reductase, Affects Chlorophyll Biosynthesis and Light Sensitivity in Rice
1052	OsEBS	Os05g0591400	10.1111/pbi.12097	Identification and characterization of OsEBS, a gene involved in enhanced plant biomass and spikelet number in rice
1053	SOR1	Os04g0101800	10.1186/1939-8433-6-30	Isolation of a novel mutant gene for soil-surface rooting in rice (Oryza sativa L.)
1054	OsCPK10	Os03g0788500	10.1016/j.plaphy.2013.10.004		Annotated
1055	JMJ705	Os01g0907400	10.1105/tpc.113.118802	Jumonji C Domain Protein JMJ705-Mediated Removal of Histone H3 Lysine 27 Trimethylation Is Involved in Defense-Related Gene Activation in Rice	Stress
1056	OsCCaMK	Os05g0489900	10.1128/AEM.03646-13.	A rice gene for microbial symbiosis, OsCCaMK, reduces CH 4 flux in a paddy field with low nitrogen input	Stress
1061	LH8	Os08g0174500	10.1038/srep04263		Annotated
1063	OsTrx1	Os09g0134500	10.1104/pp.113.228049	Trithorax group protein Oryza sativa Trithorax1 controls flowering time in rice via interaction with early heading date3
1071	RIXI	Os11g0701800	10.1007/s10658-013-0342-0	Functional characterization of a new pathogen induced xylanase inhibitor (RIXI) from rice
1072	TCD9	Os09g0563300	10.1016/j.plantsci.2013.11.003	Importance of the rice TCD9 encoding α subunit of chaperonin protein 60 (Cpn60α) for the chloroplast development during the early leaf stage.
1074	OsBURP16	Os10g0409400	10.1111/pce.12223	Overexpression of stress-inducible OsBURP16, the β subunit of polygalacturonase 1, decreases pectin content and cell adhesion and increases abiotic stress sensitivity in rice
1075	OsDSR2	Os01g0839200	10.1007/s00299-013-1532-0	Overexpression of a new stress-repressive gene OsDSR2 encodinga protein with a DUF966 domain increases salt and simulated drought stress sensitivities and reduces ABA sensitivity in rice
1076	ssg4	Os01g0179400	10.1104/pp.113.229591	Amyloplast-Localized SUBSTANDARD STARCH GRAIN4 Protein Influences the Size of Starch Grains in Rice Endosperm
1080	OsAMT1;1	Os04g0509600	10.1093/jxb/ert458	AMT1;1 transgenic rice plants with enhanced NH4+ permeability show superior growth and higher yield under optimal and suboptimal NH4+ conditions
1082	WLP1	Os01g0749200	10.1007/s11103-013-0134-0	The rice nuclear gene WLP1 encoding a chloroplast ribosome L13 protein is needed for chloroplast development in rice grown under low temperature conditions
1083	ADH1	Os11g0210300	10.1093/aob/mct305		Annotated
1084	OsAlba1	Os01g0173100	10.1016/j.phytochem.2014.01.015		Annotated
1086	OsDCL3a	Os01g0909200	10.1073/pnas.1318131111		Annotated
1087	SGL	Os05g0154700	10.1007/s00299-013-1524-0		Annotated
1088	OsHI-XIP	Os05g0247100	10.1007/s11105-013-0661-5	Overexpression of a Xylanase Inhibitor Gene, OsHI-XIP, Enhances Resistance in Rice to Herbivore
1089	OsZHD1	Os09g0466400	10.1007/s00425-013-2009-7		Annotated
1090	CYP96B4	Os03g0140400	10.1371/journal.pone.0088068	The rice semi-dwarf mutant sd37, caused by a mutation in CYP96B4, plays an important role in the fine-tuning of plant growth.
1092	FLO6	Os03g0686900	10.1111/tpj.12444	FLOURY ENDOSPERM6 encodes a CBM48 domain-containing protein involved in compound granule formation and starch synthesis in rice endosperm
1093	OsKS2	Os04g0612000	10.1111/plb.12069		Annotated
1094	OsDG2	Os02g0606000	10.1007/s00299-013-1549-4	The rice OsDG2 encoding a glycine-rich protein is involved in the regulation of chloroplast development during early seedling stage
1095	Hwi2	Os01g0795400	10.1038/ncomms4357		A two-locus interaction causes interspecific hybrid weakness in rice
1222	Hwi1	Os11g0173500	10.1038/ncomms4357		A two-locus interaction causes interspecific hybrid weakness in rice
1096	OsGLO4	Os07g0152900	10.1111/ppl.12104	Suppression of glycolate oxidase causes glyoxylate accumulation that inhibits photosynthesis through deactivating Rubisco in rice
1097	DL	Os03g0215200	10.1111/tpj/12411		Annotated
1098	OsETT2	Os01g0670800	10.1111/tpj/12411	The DROOPING LEAF and OsETTIN2 genes promote awndevelopment in rice
1099	SHL2	Os01g0527600	10.1111/tpj/12411	Rice RNA-dependent RNA polymerase 6 acts in small RNA biogenesis and spikelet development.
1100	OsLIS	Os02g0121700	10.1111/pce.12169	Jasmonate induction of the monoterpene linalool confers resistance to rice bacterial blight and its biosynthesis is regulated by JAZ protein in rice
1101	OsPT9	Os06g0324800	10.1111/pce.12224	Phosphate transporters OsPHT1;9 and OsPHT1;10 are involved in phosphate uptake in rice.
1102	OsPT10	Os06g0325200	10.1111/pce.12224	Phosphate transporters OsPHT1;9 and OsPHT1;10 are involved in phosphate uptake in rice.
1106	LTG1	Os02g0622100	10.1111/tpj.12487	Annotated
1107	OsRPK1	Os05g0486100	10.1016/j.bbagen.2014.01.003		Annotated
1108	d89	Os05g0333200	10.1007/s10681-014-1071-y		Annotated
1112	OsEMF2b	Os09g0306800	10.1007/s11105-014-0733-1	OsEMF2b Acts as a Regulator of Flowering Transition and Floral Organ Identity by Mediating H3K27me3 Deposition at OsLFL1 and OsMADS4 in Rice
1117	OsFIE1	Os08g0137250	10.1104/pp.113.232413		Annotated
1118	OsUGE1	Os05g0595100	10.1371/journal.pone.0096158	Functional Characterization of the Rice UDP-glucose 4- epimerase 1, OsUGE1: A Potential Role in Cell Wall Carbohydrate Partitioning during Limiting Nitrogen Conditions
1119	OsATG7	Os01g0614900	10.4161/auto.28279	OsATG7 is required for autophagy-dependent lipid metabolism in rice postmeiotic anther development
1120	chalk5	Os05g0156900	10.1038/ng.2923	Chalk5 encodes a vacuolar H + -translocating pyrophosphatase influencing grain chalkiness in rice
1122	cl7(t)	Os07g0616000	10.1093/jxb/eru074	Rice DENSE AND ERECT PANICLE 2 is essential for determining panicle outgrowth and elongation
1123	OsGPX1	Os04g0556300	10.1007/s10535-014-0394-9	Chloroplastic and mitochondrial GPX genes play a critical role in rice development
1124	OsGPX4	Os06g0185900	10.1007/s10535-014-0394-9	Chloroplastic and mitochondrial GPX genes play a critical role in rice development
1125	D1352	Os03g0232600	10.1007/s11032-014-0021-7		Annotated
1126	OsAHP1	Os08g0557700	10.1104/pp.113.232629	Two Rice Authentic Histidine Phosphotransfer Proteins, OsAHP1 and OsAHP2, Mediate Cytokinin Signaling and Stress Responses in Rice
1127	OsAHP2	Os09g0567400	10.1104/pp.113.232629	Two Rice Authentic Histidine Phosphotransfer Proteins, OsAHP1 and OsAHP2, Mediate Cytokinin Signaling and Stress Responses in Rice
1128	OsWR2	Os06g0604000	10.1007/s11105-013-0687-8		Annotated
1129	Se14	Os03g0151300	10.1371/journal.pone.0096064	Se14, Encoding a JmjC Domain-Containing Protein, Plays Key Roles in Long-Day Suppression of Rice Flowering through the Demethylation of H3K4me3 of RFT1
1130	MET1b	Os07g0182900	10.1007/s11103-014-0178-9		Annotated
1131	MET1a	Os03g0798300	10.1007/s11103-014-0178-9	Homologous recombination-mediated knock-in targeting of the MET1a gene for a maintenance DNA methyltransferase reproducibly reveals dosage-dependent spatiotemporal gene expression in rice
1133	smos1	Os05g0389000	10.1093/pcp/pcu023	A Novel AP2-Type Transcription Factor, SMALL ORGAN SIZE1, Controls Organ Size Downstream of an Auxin Signaling Pathway
1135	OsCPK4	Os02g0126400	10.1104/pp.113.230268		Annotated
1136	OsPAD4	Os11g0195500	10.1111/tpj.12500	Rice OsPAD4 functions differently from Arabidopsis AtPAD4 in host-pathogen interactions
1137	OsMOGS	Os01g0921200	10.1111/tpj.12497		Annotated
1138	OsJAR1	Os05g0586200	10.1111/pce.12201		Annotated
1139	OsMADS34	Os03g0756100	10.1111/nph.12657		Annotated
1140	OsMRP5	Os03g0142800	10.1007/s11248-014-9792-1	Seed-specific silencing of OsMRP5 reduces seed phytic acid and weight in rice
1141	TMS 9-1(OsMS1)	Os09g0449000	10.1007/s00122-014-2289-8		Annotated
1142	epsps	Os06g0133900	10.1111/nph.12428	A novel 5-enolpyruvoylshikimate-3-phosphate (EPSP) synthase transgene for glyphosate resistance stimulates growth and fecundity in weedy rice (Oryza sativa) without herbicide
1143	DWT1	Os01g0667400	10.1371/journal.pgen.1004154		Annotated
1144	DP2	Os02g0531600	10.1007/s13258-013-0169-2	Morphological characteristics and gene mapping of a dense panicle (dp2) mutant in rice (Oryza sativa L.)
1145	OsRACK1A	Os01g0686800	10.1371/journal.pone.0097120	OsRACK1 Is Involved in Abscisic Acid- and H 2 O 2 - Mediated Signaling to Regulate Seed Germination in Rice (Oryza sativa, L.)
1223	OsCAF1A	Os08g0440300	10.1007/s11103-014-0196-7	Divergence of the expression and subcellular localization of CCR4‐associated factor 1 (CAF1) deadenylase proteins in Oryza sativa
1146	OsCAF1B	Os04g0684900	10.1007/s11103-014-0196-7		Divergence of the expression and subcellular localization of CCR4‐associated factor 1 (CAF1) deadenylase proteins in Oryza sativa
1147	OsCAF1G	Os09g0416800	10.1007/s11103-014-0196-7	Divergence of the expression and subcellular localization of CCR4‐associated factor 1 (CAF1) deadenylase proteins in Oryza sativa
1148	OsCAF1H	Os02g0796300	10.1007/s11103-014-0196-7	Divergence of the expression and subcellular localization of CCR4‐associated factor 1 (CAF1) deadenylase proteins in Oryza sativa
1149	OsLOX2 (L-2)	Os03g0738600	10.1007/s11248-014-9803-2	OsLOX2, a rice type I lipoxygenase, confers opposite effects on seed germination and longevity
1150	OsNAC111	Os10g0177000	10.1094/mpmi-03-14-0065-r	OsNAC111, a Blast Disease–Responsive Transcription Factor in Rice, Positively Regulates the Expression of Defense-Related Genes
1152	OsCKX4	Os01g0940000	10.1104/pp.114.238584		Annotated
1155	DIF1	Os01g0626400	10.1371/journal.pone.0102529		Annotated
1164	CYP93G1	Os04g0101400	10.1104/pp.114.239723	Cytochrome P450 93G1 Is a Flavone Synthase II That Channels Flavanones to the Biosynthesis of Tricin O-Linked Conjugates in Rice
1224	CYP93G2	Os06g0102100	10.1104/pp.114.239723	CYP93G2 Is a Flavanone 2-Hydroxylase Required for C-Glycosylflavone Biosynthesis in Rice
1165	OsMYB4P	Os11g0558200	10.1016/j.plaphy.2014.02.024	Overexpression of OsMYB4P, an R2R3-type MYB transcriptional activator, increases phosphate acquisition in rice
1166	rip-3 (a-tubulin)	Os03g0726100	10.1016/j.plaphy.2014.04.011	Water-stress-induced inhibition of a -tubulin gene expression during growth, and its implications for reproductive success in rice
1167	OsRDR1	Os02g0736200	10.1186/1471-2229-14-177	Mutation of the RDR1 gene caused genome-wide changes in gene expression, regional variation in small RNA clusters and localized alteration in DNA methylation in rice
1168	ygl7	Os03g0811100	10.1371/journal.pone.0099564		Annotated
1169	OsDREB6	Os09g0369000	10.1007/s12374-013-0480-0	Characterization of OsDREB6 Responsive to Osmotic and Cold Stresses in Rice
1170	OsPAO7	Os09g0368500	10.1093/pcp/pcu047	Polyamine Oxidase 7 is a Terminal Catabolism-Type Enzyme in Oryza sativa and is Specifically Expressed in Anthers
1172	OsAGPL2	Os01g0633100	10.1093/pcp/pcu057	The Rice Endosperm ADP-Glucose Pyrophosphorylase Large Subunit is Essential for Optimal Catalysis and Allosteric Regulation of the Heterotetrameric Enzyme
1173	OsMYB103L	Os08g0151300	10.1186/1471-2229-14-158	OsMYB103L, an R2R3-MYB transcription factor, influences leaf rolling and mechanical strength in rice
1174	DRO1	Os09g0439800	10.1038/srep05563		Annotated
1175	FIB	Os01g0169800	10.1111/tpj.12517		Annotated
1176	OsNIP3;1	Os10g0513200	10.1111/tpj.12511	OsNIP3;1, a rice boric acid channel, regulates boron distribution and is essential for growth under boron-deficient conditions
1177	OsETOL1	Os03g0294700	10.1111/tpj.12508		Annotated
1178	OsGLY1-11.2	Os08g0191700	10.1111/tpj.12521	A unique Ni 2+ -dependent and methylglyoxal-inducible rice glyoxalase I possesses a single active site and functions in abiotic stress response
1179	OsKTN80a	Os10g0494800	10.1111/jipb.12170	Overexpression of OsKTN80a, a katanin P80 ortholog, caused the repressed cell elongation and stalled cell division mediated by microtubule apparatus defects in primary root in Oryza Sativa
1180	WRKY45	Os05g0322900	10.1007/s11103-014-0221-x		Annotated
1181	OsRZFP34	Os01g0719100	10.1007/s11103-014-0217-6	Expression of a gene encoding a rice RING zinc‐finger protein, OsRZFP34, enhances stomata opening	Stress
1182	OsSPS1	Os01g0919400	10.1016/j.plantsci.2014.05.018		Annotated
1183	AM1	Os04g0682800	10.1007/s00299-014-1639-y		Annotated
1184	OsMPK3	Os02g0148100	10.1007/s00299-014-1620-9		Annotated
1186	OsMet1-2	Os07g0182900	10.1073/pnas.1410761111		Annotated
1189	sped1	Os06g0597500	10.1534/genetics.114.163931	Regulation of Inflorescence Branch Development in Rice Through a Novel Pathway Involving the Pentatricopeptide Repeat Protein sped1-D
1190	OsXXT1	Os03g0300000	10.1093/jxb/eru189	Mutation in xyloglucan 6-xylosytransferase results in abnormal root hair development in Oryza sativa
1191	Nrat1	Os02g0131800	10.1093/jxb/eru201		Annotated
1192	SLCHL4 (NAL1)	Os04g0615000	10.1093/mp/ssu055		Annotated
1193	OsNMD3	Os10g0573900	10.1093/jxb/eru150		Annotated
1194	OsRAN1	Os01g0611100	10.1093/jxb/eru178		Annotated
1195	OsABCB14	Os04g0459000	10.1111/tpj.12544	OsABCB14 functions in auxin transport and iron homeostasis in rice (Oryza sativa.L)
1196	OsRAD51D	Os09g0104200	10.1111/tpj.12558		Annotated
1198	Roc5(rl(t))	Os02g0674800	10.1007/s11434-014-0357-8	Isolation and characterization of rl (t) , a gene that controls leaf rolling in rice
1200	OsB12D1	Os07g0604700	10.3390/ijms150813461	The Mitochondrion-Located Protein OsB12D1 Enhances Flooding Tolerance during Seed Germination and Early Seedling Growth in Rice	Stress
1201	OsHO2	Os03g0395000	10.1007/s00425-014-2116-0	Annotated	Biosynthesis
1202	CL4 (= dwarf11)	Os04g0469800	10.1007/s11434-014-0568-z	Annotated	Development
1203	OsEXPA3	Os05g0276500	10.2135/cropsci2013.11.0746	Repression of OsEXPA3 Expression Leadsto Root System Growth Suppression in Rice	Stress,Development
1204	bHLH142	Os01g0293100	10.1105/tpc.114.126292	Annotated	Development
1205	SIT1	Os02g0640500	10.1105/tpc.114.125187	The Receptor-Like Kinase SIT1 Mediates Salt Sensitivity by Activating MAPK3/6 and Regulating Ethylene Homeostasis in Rice	Stress
1206	SIT2	Os04g0531400	10.1105/tpc.114.125187	The Receptor-Like Kinase SIT1 Mediates Salt Sensitivity by Activating MAPK3/6 and Regulating Ethylene Homeostasis in Rice	Stress
1207	CPK18	Os07g0409900	10.1105/tpc.114.126441	Direct Phosphorylation and Activation of a Mitogen-Activated Protein Kinase by a Calcium-Dependent Protein Kinase in Rice	Stress
1208	OsHPR1	Os02g0101500	10.1111/jipb.12125	Two hydroxypyruvate reductases encoded by OsHPR1 and OsHPR2 are involved in photorespiratory metabolism in rice	Metabolism
1222	OsHPR2	Os01g0228600	10.1111/jipb.12125	Two hydroxypyruvate reductases encoded by OsHPR1 and OsHPR2 are involved in photorespiratory metabolism in rice	Metabolism
1209	OsCAD2	Os02g0187800	10.1038/srep06567	Annotated
1210	OsSLI1	Os02g0649300	10.1155/2014/809353	OsSLI1, a Homeodomain Containing Transcription Activator, Involves Abscisic Acid Related Stress Response in Rice (Oryza sativa L.)	Stress,Development
1211	OsMKK1 (MAPKK)	Os06g0147800	10.1016/j.plantsci.2014.08.007	The mitogen-activated protein kinase cascade MKK1-MPK4 mediates salt signaling in rice	Stress
1212	SPK1(SYG1)	Os06g0603600	10.1073/pnas.1404680111	Annotated	Finished
1213	SPK2(SYG2)	Os02g0202200	10.1073/pnas.1404680111	Rice SPX1 and SPX2 inhibit phosphate starvation responses through interacting with PHR2 in a phosphate-dependent manner
1215	OsAAP6	Os01g0878700	10.1038/ncomms5847	OsAAP6 functions as an important regulator of grain protein content and nutritional quality in rice
1216	OsSOT1(STV11)	Os11g0505300	10.1038/ncomms5768	STV11 encodes a sulphotransferase and confers durable resistance to rice stripe virus
1217	tms5	Os02g0214300	10.1038/srep06567		Annotated
1218	CYP703A3	Os08g0131100	10.1111/jipb.12212	Rice CYP703A3, a cytochrome P450 hydroxylase, is essential for development of anther cuticle and pollen exine	Development
1219	OsGUN4	Os11g0267000	10.1007/s00122-014-2393-9	A down-regulated epi-allele of the genomes uncoupled 4 gene generates a xantha marker trait in rice.	Color
1220	OsBADH1	Os04g0464200	OsBADH1 is possibly involved in acetaldehyde oxidation in rice plant peroxisomes	OsBADH1 is possibly involved in acetaldehyde oxidation in rice plant peroxisomes	Stress
243	gh2	Os02g0187800	10.1104/pp.105.073007	Increased lodging resistance in long-culm, low-lignin gh2 rice for improved feed and bioenergy production	Stress
1221	OsABCC1	Os04g0620000	10.1073/pnas.1414968111	A rice ABC transporter, OsABCC1, reduces arsenic accumulation in the grain	Stress
demo	demo	Os04g0459000	demo	demo	demo